| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is hemK [H]
Identifier: 78358025
GI number: 78358025
Start: 2965676
End: 2966569
Strand: Direct
Name: hemK [H]
Synonym: Dde_2985
Alternate gene names: 78358025
Gene position: 2965676-2966569 (Clockwise)
Preceding gene: 78358024
Following gene: 78358026
Centisome position: 79.5
GC content: 62.75
Gene sequence:
>894_bases ATGTGCACCAGCGTTACCCCCGCTTCCCGCACCATCCGCGACACTCTTACCGCCTTCTCGGCCCTGCTGGCCGGGAAGGC GGTTGATTCTCCGCGGCTTTCCGCCGAGCTGCTGCTTGCGCACGTGCTGCGCACCGACAGGCTGCAGCTGCTTGTCCGGC GCGGGCACATGCTGACAGAAAAAGAATACGCACAGGCGGAAAAACTCATCCTGCGCAGAGCGGAGGGAGAACCTGTGGCC TACCTGACGGGCAGCCGCGAATTCTACGGCAGGGAATTTGCTGTCTCGACGGACACGCTCATCCCCCGTCCGGACACAGA GCTGCTGATAGACACGCTGAAAAAGGAATACCCGCCGCACGCCGCACTGCGGTTTGCCGATCTGGGCACCGGCAGCGGAT GCATTGCCGTCAGCGTTGCAGCCGAGATGCCCTCGGCGCACGGCACTGCTGTGGATATCAGCTCCGGAGCGCTGCACACC GCCAGGGAAAACGCGGCACGGCACCGCGTTGCCGACAGGGTAGCCTTTGTGCAGGCAGACTTCACCTCACCTCTTTTCCG ACCCGCATCATTCGACGTGGTGCTTTCCAATCCACCCTATGTCAGCGCCACGGAATACGAGACGCTCAGCCCCGAAGTGC GCTGCCACGAACCGCAAAGGGCGCTGGTACCTGACACGCCGGCTTCCACCGGGCTGGAACACGCGGCGGCCCTGCTGCCG CTGGCTTTCGGCTGGCTGAAACCGGGAGGACTCTTCCTTATGGAATTCGGCTGGAAACAAGGCCCCGACATCATGGCCAT GGTCAAAGCGCAACATGGACAGTGGACCGTTGCGGTCATCCTGCAGGACCTTGCGGGCAGAGACAGAGCCTTGTACGCAC GTCGCTGTGATTGA
Upstream 100 bases:
>100_bases TGGACGCGTTCATGGAAGGTCAGATAGGCGACATGCTCGATGCCCTGATCACCCACGCTCAGACCGAAGCTCTCAAGGCG CAGGCCAACGTGCATTAATC
Downstream 100 bases:
>100_bases TGTAAAAAAACCACATGGTGTAAAAAACACACAGTTGCGGCACAGCCTGCCTGAAAAAACATCTCATAAAATCAGCGGAC TACAACCAATACCGCAACGG
Product: HemK family modification methylase
Products: NA
Alternate protein names: HemK protein homolog; M.RcoHemKP; tRNA (guanine-N(7)-)-methyltransferase; tRNA(m7G46)-methyltransferase [H]
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MCTSVTPASRTIRDTLTAFSALLAGKAVDSPRLSAELLLAHVLRTDRLQLLVRRGHMLTEKEYAQAEKLILRRAEGEPVA YLTGSREFYGREFAVSTDTLIPRPDTELLIDTLKKEYPPHAALRFADLGTGSGCIAVSVAAEMPSAHGTAVDISSGALHT ARENAARHRVADRVAFVQADFTSPLFRPASFDVVLSNPPYVSATEYETLSPEVRCHEPQRALVPDTPASTGLEHAAALLP LAFGWLKPGGLFLMEFGWKQGPDIMAMVKAQHGQWTVAVILQDLAGRDRALYARRCD
Sequences:
>Translated_297_residues MCTSVTPASRTIRDTLTAFSALLAGKAVDSPRLSAELLLAHVLRTDRLQLLVRRGHMLTEKEYAQAEKLILRRAEGEPVA YLTGSREFYGREFAVSTDTLIPRPDTELLIDTLKKEYPPHAALRFADLGTGSGCIAVSVAAEMPSAHGTAVDISSGALHT ARENAARHRVADRVAFVQADFTSPLFRPASFDVVLSNPPYVSATEYETLSPEVRCHEPQRALVPDTPASTGLEHAAALLP LAFGWLKPGGLFLMEFGWKQGPDIMAMVKAQHGQWTVAVILQDLAGRDRALYARRCD >Mature_297_residues MCTSVTPASRTIRDTLTAFSALLAGKAVDSPRLSAELLLAHVLRTDRLQLLVRRGHMLTEKEYAQAEKLILRRAEGEPVA YLTGSREFYGREFAVSTDTLIPRPDTELLIDTLKKEYPPHAALRFADLGTGSGCIAVSVAAEMPSAHGTAVDISSGALHT ARENAARHRVADRVAFVQADFTSPLFRPASFDVVLSNPPYVSATEYETLSPEVRCHEPQRALVPDTPASTGLEHAAALLP LAFGWLKPGGLFLMEFGWKQGPDIMAMVKAQHGQWTVAVILQDLAGRDRALYARRCD
Specific function: Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA [H]
COG id: COG2890
COG function: function code J; Methylase of polypeptide chain release factors
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the methyltransferase superfamily. TrmB family [H]
Homologues:
Organism=Homo sapiens, GI7705409, Length=297, Percent_Identity=27.2727272727273, Blast_Score=98, Evalue=9e-21, Organism=Escherichia coli, GI1787463, Length=236, Percent_Identity=37.7118644067797, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI87082085, Length=272, Percent_Identity=31.9852941176471, Blast_Score=103, Evalue=1e-23, Organism=Drosophila melanogaster, GI24582226, Length=264, Percent_Identity=25, Blast_Score=90, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR004556 - InterPro: IPR019874 - InterPro: IPR007848 - InterPro: IPR003358 [H]
Pfam domain/function: PF02390 Methyltransf_4; PF05175 MTS [H]
EC number: =2.1.1.33 [H]
Molecular weight: Translated: 32403; Mature: 32403
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00626 RCC1_2 ; PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCTSVTPASRTIRDTLTAFSALLAGKAVDSPRLSAELLLAHVLRTDRLQLLVRRGHMLTE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH KEYAQAEKLILRRAEGEPVAYLTGSREFYGREFAVSTDTLIPRPDTELLIDTLKKEYPPH HHHHHHHHHHHHHCCCCCEEEEECCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC AALRFADLGTGSGCIAVSVAAEMPSAHGTAVDISSGALHTARENAARHRVADRVAFVQAD HHEEEEECCCCCCEEEEEEEHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHEEEEC FTSPLFRPASFDVVLSNPPYVSATEYETLSPEVRCHEPQRALVPDTPASTGLEHAAALLP CCCCCCCCCCEEEEECCCCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHH LAFGWLKPGGLFLMEFGWKQGPDIMAMVKAQHGQWTVAVILQDLAGRDRALYARRCD HHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCEEHHHHHHHHCCCCHHHHEECCC >Mature Secondary Structure MCTSVTPASRTIRDTLTAFSALLAGKAVDSPRLSAELLLAHVLRTDRLQLLVRRGHMLTE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH KEYAQAEKLILRRAEGEPVAYLTGSREFYGREFAVSTDTLIPRPDTELLIDTLKKEYPPH HHHHHHHHHHHHHCCCCCEEEEECCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC AALRFADLGTGSGCIAVSVAAEMPSAHGTAVDISSGALHTARENAARHRVADRVAFVQAD HHEEEEECCCCCCEEEEEEEHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHEEEEC FTSPLFRPASFDVVLSNPPYVSATEYETLSPEVRCHEPQRALVPDTPASTGLEHAAALLP CCCCCCCCCCEEEEECCCCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHH LAFGWLKPGGLFLMEFGWKQGPDIMAMVKAQHGQWTVAVILQDLAGRDRALYARRCD HHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCEEHHHHHHHHCCCCHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]