Click here to switch to the map view.

The map label for this gene is yqxC [H]

Identifier: 78358021

GI number: 78358021

Start: 2962277

End: 2963026

Strand: Reverse

Name: yqxC [H]

Synonym: Dde_2981

Alternate gene names: 78358021

Gene position: 2963026-2962277 (Counterclockwise)

Preceding gene: 78358036

Following gene: 78358020

Centisome position: 79.43

GC content: 62.4

Gene sequence:

>750_bases
ATGCCCCGTAAGGAACGCGCAGATCAACTGGTTTATGAACAGGGACTGGCCGAAAGCCGCGAACAGGCCAAACGGCTTAT
CATGGCGGGCAAGGTGTATGTGCTGCGCCCCGGGGCAGAGCCTGAACCGGTGGGCAAGCCGGGCACGCGCTATGACGCCT
GCTGGCATATGGAGCTGAAAGGCGTGGAGCGGTTTGTCAGCCGCGGCGCGTACAAGCTGCTTACCGCCATAGAGACATTC
GGACTGGATGTGCAGGGTATGGTGGCGCTGGATGCGGGTGCTTCCACCGGCGGCTTCACCGACTGTCTGCTGCAGCACGG
GGCGGCGCGGGTGTATGCCGTTGATGTGGGTAAAAACCAGCTGCACGAGCGCATGCGCTCCGACAGCCGCGTGGTAAGCA
TGGAAGGGGTCAACCTGCGGACCGCGCCGGACGATCTGCTGCCGGAACAGGTAGATATTATCGTGGCGGATGTTTCGTTC
ATTTCGCTTACGCTCATTCTGCCCGCCTGCCTGCGTTTTCTGCGCAAGGGAGGAGTGGTGGCTGCGCTTGTCAAGCCGCA
GTTCGAGGTGGGAGCCGGTCAGACCGTCAAAGGCGTTGTGCGCGATGAGGCACTGCGCAGGCAGGCGGTGGACAAAGTGC
TCGACTTTGCCCGCGACCAGCTGGGGCTGACCGTGCAGGGGGTGGTGCCTTCGGCCATCAAAGGGCCGAAGGGCAATCAG
GAATACATCGCCTGTCTGCGGCTGCCATGA

Upstream 100 bases:

>100_bases
CTGTTACCCTGTGCCGCGCACAGAGGTGGCGTGCAGATTTTTTCACGCAGCTGCGCCTGCAGCACCTAAGCCCGAAAACG
ATGATTGTCAAGGAAAGAGT

Downstream 100 bases:

>100_bases
TAACATTGCGGGGCCAGCTGCCTCGTCTTTGAGCCTCACGCCGGTTTTGCCGTATGATTCCTGCCATATTCTTTGATTGT
CAGGCAGGAGGCGGCAATGC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MPRKERADQLVYEQGLAESREQAKRLIMAGKVYVLRPGAEPEPVGKPGTRYDACWHMELKGVERFVSRGAYKLLTAIETF
GLDVQGMVALDAGASTGGFTDCLLQHGAARVYAVDVGKNQLHERMRSDSRVVSMEGVNLRTAPDDLLPEQVDIIVADVSF
ISLTLILPACLRFLRKGGVVAALVKPQFEVGAGQTVKGVVRDEALRRQAVDKVLDFARDQLGLTVQGVVPSAIKGPKGNQ
EYIACLRLP

Sequences:

>Translated_249_residues
MPRKERADQLVYEQGLAESREQAKRLIMAGKVYVLRPGAEPEPVGKPGTRYDACWHMELKGVERFVSRGAYKLLTAIETF
GLDVQGMVALDAGASTGGFTDCLLQHGAARVYAVDVGKNQLHERMRSDSRVVSMEGVNLRTAPDDLLPEQVDIIVADVSF
ISLTLILPACLRFLRKGGVVAALVKPQFEVGAGQTVKGVVRDEALRRQAVDKVLDFARDQLGLTVQGVVPSAIKGPKGNQ
EYIACLRLP
>Mature_248_residues
PRKERADQLVYEQGLAESREQAKRLIMAGKVYVLRPGAEPEPVGKPGTRYDACWHMELKGVERFVSRGAYKLLTAIETFG
LDVQGMVALDAGASTGGFTDCLLQHGAARVYAVDVGKNQLHERMRSDSRVVSMEGVNLRTAPDDLLPEQVDIIVADVSFI
SLTLILPACLRFLRKGGVVAALVKPQFEVGAGQTVKGVVRDEALRRQAVDKVLDFARDQLGLTVQGVVPSAIKGPKGNQE
YIACLRLP

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27127; Mature: 26996

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKERADQLVYEQGLAESREQAKRLIMAGKVYVLRPGAEPEPVGKPGTRYDACWHMELK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEHHHH
GVERFVSRGAYKLLTAIETFGLDVQGMVALDAGASTGGFTDCLLQHGAARVYAVDVGKNQ
HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHH
LHERMRSDSRVVSMEGVNLRTAPDDLLPEQVDIIVADVSFISLTLILPACLRFLRKGGVV
HHHHHCCCCEEEEECCCEEECCCHHHCCCHHHEEEEHHHHHHHHHHHHHHHHHHHCCCEE
AALVKPQFEVGAGQTVKGVVRDEALRRQAVDKVLDFARDQLGLTVQGVVPSAIKGPKGNQ
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHCCCCCCH
EYIACLRLP
HEEEEEECC
>Mature Secondary Structure 
PRKERADQLVYEQGLAESREQAKRLIMAGKVYVLRPGAEPEPVGKPGTRYDACWHMELK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEHHHH
GVERFVSRGAYKLLTAIETFGLDVQGMVALDAGASTGGFTDCLLQHGAARVYAVDVGKNQ
HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHH
LHERMRSDSRVVSMEGVNLRTAPDDLLPEQVDIIVADVSFISLTLILPACLRFLRKGGVV
HHHHHCCCCEEEEECCCEEECCCHHHCCCHHHEEEEHHHHHHHHHHHHHHHHHHHCCCEE
AALVKPQFEVGAGQTVKGVVRDEALRRQAVDKVLDFARDQLGLTVQGVVPSAIKGPKGNQ
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHCCCCCCH
EYIACLRLP
HEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]