Click here to switch to the map view.

The map label for this gene is yaaJ [C]

Identifier: 78357893

GI number: 78357893

Start: 2838612

End: 2840003

Strand: Direct

Name: yaaJ [C]

Synonym: Dde_2852

Alternate gene names: 78357893

Gene position: 2838612-2840003 (Clockwise)

Preceding gene: 78357891

Following gene: 78357897

Centisome position: 76.1

GC content: 60.78

Gene sequence:

>1392_bases
ATGACTGACCTTACTGTTCTACTGCAATCTATCAATGCATTCGTGTGGGGGCCGCCACTGCTGGCCCTGCTGGTCGGCAC
CGGCATCTACCTTACCCTCAGACTGGGCATCATGCAGATACGGCGCCTGCCCATGGCGCTTTCGCTGGTCTTCAGCCGCG
ACAAGGGACACCAGAACGAGGGGGATGTTTCCCCTTTTGCCGCACTGTGCACCGCTCTGTCGGCCACCATCGGCACGGGC
AACATCGTGGGCGTGGCAACGGCCATTGCGGCCGGCGGTCCCGGTGCGCTTTTCTGGATGTGGATAGCCGCCTTTTTCGG
CATGGCCACAAAATACTCAGAATGCCTGCTGGCGGTTAAGTACCGCGTAAAAGACGCCAACGGACAGATGACCGGCGGAC
CCATGGTCTATCTTGAGCGGGGGCTGGGCAGCCGCCTGCTGGCACGCATGTTTGCGCTGTTCGGCATTCTGGTGGCCTTT
TTCGGCATCGGCACCTTTGCTCAGGTCAACGCCATCAAAGACGCCGCACAGCTGACTTTCGGCATTCCCTCATGGGGCAC
CGCGGCCGTGCTTACCACGCTGGTCACCATGGTCACACTGGGCGGCATCCGTTCCATAGCCAGAGTGGCCGAGCGTGTTG
TCCCCTTCATGGCTGCGTTCTATCTGGGTGCCTCGCTCATCGTGCTCATGCTCAACCTCGGTCAGGTGCCCGCCGCCGTC
TCACTCATCGTCGAATCGGCATTCAATCCTTCGGCGGCATTCGGCGGAGCAGCAGGCATGTCTGTGCTCATGGTCATGCG
CAGCGGCATCGCGCGCGGCGTGTTTTCCAATGAATCGGGTCTCGGTTCCGCTCCCATCGCCGCGGCGGCAGCCCGCACGG
ACTCCTGCGTCCGGCAGGGACTTATCGCCATGACAGGCACCTTCTTCGATACCATTGTCATATGCTCCATGACCGGCATT
GTACTGGTGATGACCGGCGTATGGAATGACGGTGCTCTGGCCGGAGCGGCCATGACCAACACGGCTTTTGCTCTGGGCAT
GGGCGGCATGGGACCGCAGGTTGTTACCGTGGGGCTCATGTTCTTTGCGTTCACCACCATTCTCGGCTGGAACTACTACG
GTGAGCGCTGCACAACCTATCTGTTCGGAGTCAAAGGCATTCTGCCATACCGGCTGATATACATCGGACTGGTGGCCATC
GGCGCCTTTGTCCATCTGGACCTCATCTGGCTGCTTGCCGACATCGTCAACGGCCTGATGGCTGTGCCCAACCTCATCGG
TCTGCTCGGTCTTTCCGGTGTTGTTGTGGCAGAAACACGCGCCTACTTCGCAGCCCGCGAGGCAGAGCGTACCGCTGAAG
CGGATTCGGCCGCGCTCCCGCAGGAGCGTTAG

Upstream 100 bases:

>100_bases
GCCTTCATTGCGCTTTGCGCAACGCGCAGCGCCGCTTCCTCTTCAAGTAGACTCGAAGTCCGTCTCTACCTGGGAATTTA
ACAATTTCAAGGAAATAGAG

Downstream 100 bases:

>100_bases
GCCTTCTCCATAGAAAGTGTGTGGTTGGTGAAAGGCCGGACATCGGGTCCGGCCTTTCCGCGTTTTACAAAGCCGGAACA
TCCGGCAGACGGTGACGGCC

Product: amino acid carrier protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MTDLTVLLQSINAFVWGPPLLALLVGTGIYLTLRLGIMQIRRLPMALSLVFSRDKGHQNEGDVSPFAALCTALSATIGTG
NIVGVATAIAAGGPGALFWMWIAAFFGMATKYSECLLAVKYRVKDANGQMTGGPMVYLERGLGSRLLARMFALFGILVAF
FGIGTFAQVNAIKDAAQLTFGIPSWGTAAVLTTLVTMVTLGGIRSIARVAERVVPFMAAFYLGASLIVLMLNLGQVPAAV
SLIVESAFNPSAAFGGAAGMSVLMVMRSGIARGVFSNESGLGSAPIAAAAARTDSCVRQGLIAMTGTFFDTIVICSMTGI
VLVMTGVWNDGALAGAAMTNTAFALGMGGMGPQVVTVGLMFFAFTTILGWNYYGERCTTYLFGVKGILPYRLIYIGLVAI
GAFVHLDLIWLLADIVNGLMAVPNLIGLLGLSGVVVAETRAYFAAREAERTAEADSAALPQER

Sequences:

>Translated_463_residues
MTDLTVLLQSINAFVWGPPLLALLVGTGIYLTLRLGIMQIRRLPMALSLVFSRDKGHQNEGDVSPFAALCTALSATIGTG
NIVGVATAIAAGGPGALFWMWIAAFFGMATKYSECLLAVKYRVKDANGQMTGGPMVYLERGLGSRLLARMFALFGILVAF
FGIGTFAQVNAIKDAAQLTFGIPSWGTAAVLTTLVTMVTLGGIRSIARVAERVVPFMAAFYLGASLIVLMLNLGQVPAAV
SLIVESAFNPSAAFGGAAGMSVLMVMRSGIARGVFSNESGLGSAPIAAAAARTDSCVRQGLIAMTGTFFDTIVICSMTGI
VLVMTGVWNDGALAGAAMTNTAFALGMGGMGPQVVTVGLMFFAFTTILGWNYYGERCTTYLFGVKGILPYRLIYIGLVAI
GAFVHLDLIWLLADIVNGLMAVPNLIGLLGLSGVVVAETRAYFAAREAERTAEADSAALPQER
>Mature_462_residues
TDLTVLLQSINAFVWGPPLLALLVGTGIYLTLRLGIMQIRRLPMALSLVFSRDKGHQNEGDVSPFAALCTALSATIGTGN
IVGVATAIAAGGPGALFWMWIAAFFGMATKYSECLLAVKYRVKDANGQMTGGPMVYLERGLGSRLLARMFALFGILVAFF
GIGTFAQVNAIKDAAQLTFGIPSWGTAAVLTTLVTMVTLGGIRSIARVAERVVPFMAAFYLGASLIVLMLNLGQVPAAVS
LIVESAFNPSAAFGGAAGMSVLMVMRSGIARGVFSNESGLGSAPIAAAAARTDSCVRQGLIAMTGTFFDTIVICSMTGIV
LVMTGVWNDGALAGAAMTNTAFALGMGGMGPQVVTVGLMFFAFTTILGWNYYGERCTTYLFGVKGILPYRLIYIGLVAIG
AFVHLDLIWLLADIVNGLMAVPNLIGLLGLSGVVVAETRAYFAAREAERTAEADSAALPQER

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=446, Percent_Identity=37.4439461883408, Blast_Score=265, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 48482; Mature: 48351

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLTVLLQSINAFVWGPPLLALLVGTGIYLTLRLGIMQIRRLPMALSLVFSRDKGHQNE
CCHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GDVSPFAALCTALSATIGTGNIVGVATAIAAGGPGALFWMWIAAFFGMATKYSECLLAVK
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YRVKDANGQMTGGPMVYLERGLGSRLLARMFALFGILVAFFGIGTFAQVNAIKDAAQLTF
HHEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEE
GIPSWGTAAVLTTLVTMVTLGGIRSIARVAERVVPFMAAFYLGASLIVLMLNLGQVPAAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SLIVESAFNPSAAFGGAAGMSVLMVMRSGIARGVFSNESGLGSAPIAAAAARTDSCVRQG
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LIAMTGTFFDTIVICSMTGIVLVMTGVWNDGALAGAAMTNTAFALGMGGMGPQVVTVGLM
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH
FFAFTTILGWNYYGERCTTYLFGVKGILPYRLIYIGLVAIGAFVHLDLIWLLADIVNGLM
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVPNLIGLLGLSGVVVAETRAYFAAREAERTAEADSAALPQER
HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TDLTVLLQSINAFVWGPPLLALLVGTGIYLTLRLGIMQIRRLPMALSLVFSRDKGHQNE
CHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC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HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]