| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is tgt
Identifier: 78357885
GI number: 78357885
Start: 2831856
End: 2832989
Strand: Direct
Name: tgt
Synonym: Dde_2844
Alternate gene names: 78357885
Gene position: 2831856-2832989 (Clockwise)
Preceding gene: 78357883
Following gene: 78357887
Centisome position: 75.92
GC content: 58.82
Gene sequence:
>1134_bases ATGGCAACAATTGGTGAATTTACGCTACACGCGACGGACGGCAAGGCGCGTACCGGTGTGCTGCAGACAGCGCACGGACC GGTGCGCACGCCCATCTTTATGCCGGTTGGCACGGTGGGCAGTGTGAAAGGCGTGGCTCCGGACGATCTGGATGCCATCG GCGCTGAAATAATTCTCGGCAACACATACCACCTGTATCTGCGCCCCGGTGACGAGCTGGTGGCGCGGCGCGGCGGGCTG CACGAATTCAACGCATGGCGCAAGCCCATACTTACCGACAGCGGCGGCTTTCAGGTTTTCAGCCTCAGCGGTCTGCGGCG TATTTCCGAAGAAGGCGTGGAGTTCCGCTCACATCTGGACGGCTCCAAGCATCTTTTCACGCCGGAAAAAGTCGTTTCCA TCCAGCGCAATCTCAACTCCGACATCATGATGGTGCTTGACGAGTGCGTGCCCTACGGCGCGGACAAAGACTACACAGCC CGCTCGCTGAAAATGACCACCCGCTGGGCGCAGCGCTGCCGCGATGCTTATCCCGCGGGCAGCGGCGGCAACCTGATGTT CGGCATCACGCAGGGCGGCTTTTTTAAAGACCTGCGCGAGGAATCCATAGGCGAGCTGACCCGCATCGACTTTGACGGTT TTGCACTGGGCGGGCTGTCGGTGGGAGAAAGCAAAACGGAAATGATGGATATTCTCTATCATACCGCCCCCATGCTGCCC GCGCACAAACCGCGCTATCTCATGGGTGTGGGCACCCCGCTGGACATCATCAACGGCATCAACGCGGGCATAGACATGTT CGACTGTGTGCTGCCCACCCGCAATGCCCGCAACGGCACGCTGTATACATCGGCCGGTAAAATAAACATCAAACGACGCG AGTTTGCAGAAGACGACGGACCGCTTGACCCCAACTGTTCGTGCTACACCTGCCGCACGTTCAGCAGGGCGTACCTGCGC CATCTCTTCCATGCGCAGGAAATCCTGTCATACAGACTCAACTCCATTCACAACCTGACGTACTTTCTCGACCTTGTACG CGGTGCGCGTGAAGCCATCGCACAGGGAACCTTTGCGGAATACAAGAGCCGCTATGATGCCATCTACCCGCAGGAAGCCG CGCTCTGCCCGTAA
Upstream 100 bases:
>100_bases GCAATTATTTTTTACTTTGCCATGACATTTTTCCGGCACTCCGGCTTCGGGCGGCGTTTTTGACTTTTCAAGACTCCCTG TCGCGGCTATGGTGCGCGCC
Downstream 100 bases:
>100_bases ACCCGCCGCAGCGGACGCGTCGGGCTTCTGTGCCTGATGACTCTGCCAGCTCATACAGTGAAAGGCCGCACGGCATACCC CGTGCGGCCTTTTTCATTCC
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MATIGEFTLHATDGKARTGVLQTAHGPVRTPIFMPVGTVGSVKGVAPDDLDAIGAEIILGNTYHLYLRPGDELVARRGGL HEFNAWRKPILTDSGGFQVFSLSGLRRISEEGVEFRSHLDGSKHLFTPEKVVSIQRNLNSDIMMVLDECVPYGADKDYTA RSLKMTTRWAQRCRDAYPAGSGGNLMFGITQGGFFKDLREESIGELTRIDFDGFALGGLSVGESKTEMMDILYHTAPMLP AHKPRYLMGVGTPLDIINGINAGIDMFDCVLPTRNARNGTLYTSAGKINIKRREFAEDDGPLDPNCSCYTCRTFSRAYLR HLFHAQEILSYRLNSIHNLTYFLDLVRGAREAIAQGTFAEYKSRYDAIYPQEAALCP
Sequences:
>Translated_377_residues MATIGEFTLHATDGKARTGVLQTAHGPVRTPIFMPVGTVGSVKGVAPDDLDAIGAEIILGNTYHLYLRPGDELVARRGGL HEFNAWRKPILTDSGGFQVFSLSGLRRISEEGVEFRSHLDGSKHLFTPEKVVSIQRNLNSDIMMVLDECVPYGADKDYTA RSLKMTTRWAQRCRDAYPAGSGGNLMFGITQGGFFKDLREESIGELTRIDFDGFALGGLSVGESKTEMMDILYHTAPMLP AHKPRYLMGVGTPLDIINGINAGIDMFDCVLPTRNARNGTLYTSAGKINIKRREFAEDDGPLDPNCSCYTCRTFSRAYLR HLFHAQEILSYRLNSIHNLTYFLDLVRGAREAIAQGTFAEYKSRYDAIYPQEAALCP >Mature_376_residues ATIGEFTLHATDGKARTGVLQTAHGPVRTPIFMPVGTVGSVKGVAPDDLDAIGAEIILGNTYHLYLRPGDELVARRGGLH EFNAWRKPILTDSGGFQVFSLSGLRRISEEGVEFRSHLDGSKHLFTPEKVVSIQRNLNSDIMMVLDECVPYGADKDYTAR SLKMTTRWAQRCRDAYPAGSGGNLMFGITQGGFFKDLREESIGELTRIDFDGFALGGLSVGESKTEMMDILYHTAPMLPA HKPRYLMGVGTPLDIINGINAGIDMFDCVLPTRNARNGTLYTSAGKINIKRREFAEDDGPLDPNCSCYTCRTFSRAYLRH LFHAQEILSYRLNSIHNLTYFLDLVRGAREAIAQGTFAEYKSRYDAIYPQEAALCP
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family
Homologues:
Organism=Homo sapiens, GI13654276, Length=374, Percent_Identity=42.2459893048128, Blast_Score=313, Evalue=1e-85, Organism=Escherichia coli, GI1786607, Length=360, Percent_Identity=53.0555555555556, Blast_Score=412, Evalue=1e-116, Organism=Caenorhabditis elegans, GI17544680, Length=360, Percent_Identity=40.2777777777778, Blast_Score=274, Evalue=7e-74, Organism=Caenorhabditis elegans, GI25146502, Length=136, Percent_Identity=28.6764705882353, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI19920510, Length=354, Percent_Identity=44.0677966101695, Blast_Score=303, Evalue=1e-82, Organism=Drosophila melanogaster, GI21355311, Length=189, Percent_Identity=31.7460317460317, Blast_Score=89, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): TGT_DESDG (Q30XF7)
Other databases:
- EMBL: CP000112 - RefSeq: YP_389334.1 - HSSP: P28720 - ProteinModelPortal: Q30XF7 - SMR: Q30XF7 - STRING: Q30XF7 - GeneID: 3757867 - GenomeReviews: CP000112_GR - KEGG: dde:Dde_2844 - NMPDR: fig|207559.3.peg.3651 - eggNOG: COG0343 - HOGENOM: HBG629929 - OMA: FMPVGTV - ProtClustDB: PRK00112 - BioCyc: DDES207559:DDE_2844-MONOMER - HAMAP: MF_00168 - InterPro: IPR004803 - InterPro: IPR002616 - Gene3D: G3DSA:3.20.20.105 - PANTHER: PTHR11962 - TIGRFAMs: TIGR00430 - TIGRFAMs: TIGR00449
Pfam domain/function: PF01702 TGT; SSF51713 tRNA_ribo_trans
EC number: =2.4.2.29
Molecular weight: Translated: 41733; Mature: 41602
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: ACT_SITE 93-93 BINDING 94-94
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIGEFTLHATDGKARTGVLQTAHGPVRTPIFMPVGTVGSVKGVAPDDLDAIGAEIILG CCCCCCEEEEECCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHCCCEEEEC NTYHLYLRPGDELVARRGGLHEFNAWRKPILTDSGGFQVFSLSGLRRISEEGVEFRSHLD CEEEEEECCCHHHHHHCCCCHHHHHHCCCCEECCCCEEEEEHHHHHHHHHHHHHHHHHCC GSKHLFTPEKVVSIQRNLNSDIMMVLDECVPYGADKDYTARSLKMTTRWAQRCRDAYPAG CCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC SGGNLMFGITQGGFFKDLREESIGELTRIDFDGFALGGLSVGESKTEMMDILYHTAPMLP CCCCEEEEECCCCHHHHHHHHHHHHHEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCC AHKPRYLMGVGTPLDIINGINAGIDMFDCVLPTRNARNGTLYTSAGKINIKRREFAEDDG CCCCCEEEECCCHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEECCCEEEEEHHHHCCCCC PLDPNCSCYTCRTFSRAYLRHLFHAQEILSYRLNSIHNLTYFLDLVRGAREAIAQGTFAE CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH YKSRYDAIYPQEAALCP HHHHHCCCCCCCCCCCC >Mature Secondary Structure ATIGEFTLHATDGKARTGVLQTAHGPVRTPIFMPVGTVGSVKGVAPDDLDAIGAEIILG CCCCCEEEEECCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHCCCEEEEC NTYHLYLRPGDELVARRGGLHEFNAWRKPILTDSGGFQVFSLSGLRRISEEGVEFRSHLD CEEEEEECCCHHHHHHCCCCHHHHHHCCCCEECCCCEEEEEHHHHHHHHHHHHHHHHHCC GSKHLFTPEKVVSIQRNLNSDIMMVLDECVPYGADKDYTARSLKMTTRWAQRCRDAYPAG CCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC SGGNLMFGITQGGFFKDLREESIGELTRIDFDGFALGGLSVGESKTEMMDILYHTAPMLP CCCCEEEEECCCCHHHHHHHHHHHHHEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCC AHKPRYLMGVGTPLDIINGINAGIDMFDCVLPTRNARNGTLYTSAGKINIKRREFAEDDG CCCCCEEEECCCHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEECCCEEEEEHHHHCCCCC PLDPNCSCYTCRTFSRAYLRHLFHAQEILSYRLNSIHNLTYFLDLVRGAREAIAQGTFAE CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH YKSRYDAIYPQEAALCP HHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA