Definition Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome.
Accession NC_007519
Length 3,730,232

Click here to switch to the map view.

The map label for this gene is ampS [H]

Identifier: 78357800

GI number: 78357800

Start: 2757152

End: 2758363

Strand: Direct

Name: ampS [H]

Synonym: Dde_2758

Alternate gene names: 78357800

Gene position: 2757152-2758363 (Clockwise)

Preceding gene: 78357799

Following gene: 78357801

Centisome position: 73.91

GC content: 58.83

Gene sequence:

>1212_bases
ATGTTCACACCCGTCTTTACCCCCGATGAACTGGAGAAATATGCCGAAGTGCTGCTGTGGGGGCTGAAGCGCGGCAAAAA
AAGCCCGCTGGCCAAAAGCAGCTTCATACTTGTGCGGTACCACCTGCCCGCGCTGCCGCTGGCGGAAGAACTGTGCGCGC
TTCTCCACGACGAAGGCATGATTCCCGTACCGCGCATGCTGCCTACCCCGCGCATGGAACGTGACCTGTACACCAAAGCC
AACAACAAGCGGCTTACCACGCTCATCCCCGGCGAGCGCGACCTGCACAATCACCTGCACGGCACCATATCACTGCTTGC
ACCGCAATCGCTTACGCACCTTTCCGGCGTAGAACCGGAACGGCTTGCCATGCACCAGCAGTCGCGTCAGCCTGTTCAGC
ACATAACACGCACCCGCGAAGAAATGGGGGCCTTCGGCTGGACTTTGTGCGTCTATCCCACCGAGGCACAGGCACAGGCC
GCGGGCCTTTCGCTGGCGGAGTATGCACACGAAATCAAAAACGCCTGCCTGCTTACCGAAGGCGATCCGGTGCAGTCATG
GCGCATGCTTGCCCGTCATGCCGAAGACATCCGCAACTGGCTGAACAGCATGGACATGGTCAGTCTGCGCACGGAATCCG
ATTCGGTCGATCTGCTTGTGACTCTGGGAGAACGCAGGGTGTGGGCGGGCATCACGGGGCGGAACATCCCCAGCTTCGAG
ATGTATGTCTCGCCCGACTGCAGGGGCACCGAAGGGGTGTATTACGCCGACCTGCCCTCCTACCGGTCGGGCAACATTGT
CAAAGGCATCAGACTTGAGTTCAAAGGCGGACGGGTGACGTCACTGACAGCAGAAGAAGGACACAGTTTTGCTGTTGAGC
AGGTGAACAGTGATCCCGGTGCCGCCCTGCTGGGAGAATATGCACTGGTGGACAGACGTTTTTCGCGCATCGGCAGATTC
ATGGCCAATACGCTGTATGACGAAAACCACGGCGGGCGGCACGGTTCCATGCATATCGCTCTCGGCCAGTCATACAGCAA
CACCTTTGACGGTCCGCCGGAAGACCTTACCCCCGAACTGCGGCGCAGTTTCGGCTTCAACACGTCCACCCTGCACTGGG
ATATGGTCAACACAGAATCAAAACGCGTCACCGCCCTGCTGCGCAGCGGTGAAAAACGCACCATTTACGAAAACGGACGC
TTCACCCTTTAG

Upstream 100 bases:

>100_bases
GTACGCGGTGCTGGCAGCCGGCTGCTTCGTCCGGTCAGGCATTTTCAAAAGACTTGCCCTCCGGCGCGGCATGACGCACA
CTTGCGCCGGAGGCACAATC

Downstream 100 bases:

>100_bases
CCGCTGCCCCGCCGGAGCGCTGCCATACCGCCATGCAACATATTCTTATCAAAGTTTACGGGCATATCTCGCCCGCCGGA
GAAGCCCTTGAATGCGCCCT

Product: M29 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MFTPVFTPDELEKYAEVLLWGLKRGKKSPLAKSSFILVRYHLPALPLAEELCALLHDEGMIPVPRMLPTPRMERDLYTKA
NNKRLTTLIPGERDLHNHLHGTISLLAPQSLTHLSGVEPERLAMHQQSRQPVQHITRTREEMGAFGWTLCVYPTEAQAQA
AGLSLAEYAHEIKNACLLTEGDPVQSWRMLARHAEDIRNWLNSMDMVSLRTESDSVDLLVTLGERRVWAGITGRNIPSFE
MYVSPDCRGTEGVYYADLPSYRSGNIVKGIRLEFKGGRVTSLTAEEGHSFAVEQVNSDPGAALLGEYALVDRRFSRIGRF
MANTLYDENHGGRHGSMHIALGQSYSNTFDGPPEDLTPELRRSFGFNTSTLHWDMVNTESKRVTALLRSGEKRTIYENGR
FTL

Sequences:

>Translated_403_residues
MFTPVFTPDELEKYAEVLLWGLKRGKKSPLAKSSFILVRYHLPALPLAEELCALLHDEGMIPVPRMLPTPRMERDLYTKA
NNKRLTTLIPGERDLHNHLHGTISLLAPQSLTHLSGVEPERLAMHQQSRQPVQHITRTREEMGAFGWTLCVYPTEAQAQA
AGLSLAEYAHEIKNACLLTEGDPVQSWRMLARHAEDIRNWLNSMDMVSLRTESDSVDLLVTLGERRVWAGITGRNIPSFE
MYVSPDCRGTEGVYYADLPSYRSGNIVKGIRLEFKGGRVTSLTAEEGHSFAVEQVNSDPGAALLGEYALVDRRFSRIGRF
MANTLYDENHGGRHGSMHIALGQSYSNTFDGPPEDLTPELRRSFGFNTSTLHWDMVNTESKRVTALLRSGEKRTIYENGR
FTL
>Mature_403_residues
MFTPVFTPDELEKYAEVLLWGLKRGKKSPLAKSSFILVRYHLPALPLAEELCALLHDEGMIPVPRMLPTPRMERDLYTKA
NNKRLTTLIPGERDLHNHLHGTISLLAPQSLTHLSGVEPERLAMHQQSRQPVQHITRTREEMGAFGWTLCVYPTEAQAQA
AGLSLAEYAHEIKNACLLTEGDPVQSWRMLARHAEDIRNWLNSMDMVSLRTESDSVDLLVTLGERRVWAGITGRNIPSFE
MYVSPDCRGTEGVYYADLPSYRSGNIVKGIRLEFKGGRVTSLTAEEGHSFAVEQVNSDPGAALLGEYALVDRRFSRIGRF
MANTLYDENHGGRHGSMHIALGQSYSNTFDGPPEDLTPELRRSFGFNTSTLHWDMVNTESKRVTALLRSGEKRTIYENGR
FTL

Specific function: Metal-dependent exopeptidase [H]

COG id: COG2309

COG function: function code E; Leucyl aminopeptidase (aminopeptidase T)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M29 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000787 [H]

Pfam domain/function: PF02073 Peptidase_M29 [H]

EC number: NA

Molecular weight: Translated: 45381; Mature: 45381

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTPVFTPDELEKYAEVLLWGLKRGKKSPLAKSSFILVRYHLPALPLAEELCALLHDEGM
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
IPVPRMLPTPRMERDLYTKANNKRLTTLIPGERDLHNHLHGTISLLAPQSLTHLSGVEPE
CCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHEEEEECCCHHHHHCCCCHH
RLAMHQQSRQPVQHITRTREEMGAFGWTLCVYPTEAQAQAAGLSLAEYAHEIKNACLLTE
HHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHCEEEEC
GDPVQSWRMLARHAEDIRNWLNSMDMVSLRTESDSVDLLVTLGERRVWAGITGRNIPSFE
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCEE
MYVSPDCRGTEGVYYADLPSYRSGNIVKGIRLEFKGGRVTSLTAEEGHSFAVEQVNSDPG
EEECCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCEEEEECCCCCC
AALLGEYALVDRRFSRIGRFMANTLYDENHGGRHGSMHIALGQSYSNTFDGPPEDLTPEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHH
RRSFGFNTSTLHWDMVNTESKRVTALLRSGEKRTIYENGRFTL
HHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure
MFTPVFTPDELEKYAEVLLWGLKRGKKSPLAKSSFILVRYHLPALPLAEELCALLHDEGM
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
IPVPRMLPTPRMERDLYTKANNKRLTTLIPGERDLHNHLHGTISLLAPQSLTHLSGVEPE
CCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHEEEEECCCHHHHHCCCCHH
RLAMHQQSRQPVQHITRTREEMGAFGWTLCVYPTEAQAQAAGLSLAEYAHEIKNACLLTE
HHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHCEEEEC
GDPVQSWRMLARHAEDIRNWLNSMDMVSLRTESDSVDLLVTLGERRVWAGITGRNIPSFE
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCEE
MYVSPDCRGTEGVYYADLPSYRSGNIVKGIRLEFKGGRVTSLTAEEGHSFAVEQVNSDPG
EEECCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCEEEEECCCCCC
AALLGEYALVDRRFSRIGRFMANTLYDENHGGRHGSMHIALGQSYSNTFDGPPEDLTPEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHH
RRSFGFNTSTLHWDMVNTESKRVTALLRSGEKRTIYENGRFTL
HHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377 [H]