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The map label for this gene is pqqE [H]

Identifier: 78357619

GI number: 78357619

Start: 2593511

End: 2594704

Strand: Direct

Name: pqqE [H]

Synonym: Dde_2577

Alternate gene names: 78357619

Gene position: 2593511-2594704 (Clockwise)

Preceding gene: 78357618

Following gene: 78357620

Centisome position: 69.53

GC content: 57.62

Gene sequence:

>1194_bases
ATGCCGTACAGGTACAAGGACACACACATGCACAACGCAAACCACCCGCACGGCAACGGCCACCCGGCAGAAAAAAAAGG
CATGGGCGCACATTCCGGCGCAATGAACATGCCCCGCACCCTTGAAGACGGCAGCCCCGCATGCCGCCTCATCGCCTGGG
AGGTCACCCGTTCCTGCAACCTTGCCTGCAAGCACTGCCGCGCCGAAGCCCATACCGAACCATATCCCGGTGAACTGAGC
ACACAGGAAGCCAAAGCGCTCATCGACACTTTTCCTGAAGTGGGCAACCCCATAATTATCTTCACCGGTGGCGACCCCAT
GATGCGCGCCGACCTGTACGAGCTGATCCGCTACGCCACGGGGCTTGGTCTGCGTTGTGTGCTGTCGCCCAACGGAACGC
TGATAACCGGGCAGAACGCCGTGCAGATACGCGAAGCCGGAGTGCAGCGCTGTTCCATTTCCATAGACGGTCCGTCTGCA
GAACTGCATGACGAGTTCCGCGGCGTACCCGGCGCATTCGAACAGTCCATGCGCGGCATTGAATTTTTGAAGCAGGCCGG
AGTGGAGTTTCAGATAAACACCACGGTTACGCGTGACAATCTTCCGTACTTCAAAGACATCTTCAAACTGTGTGAAAATC
TGGGCGCCGCAGCATGGCATATATTTCTGCTGGTACCCACCGGCCGCGCAGCACAGCTGGGCGCACAGGTCATCACCGCC
GAAGAATACGAAGAAGTACTCAACTGGTTCTACGATTTCCGCAAGACGACCTCCATGCATCTCAAGGCTACCTGCGCACC
GCACTATTACCGCATCATGCGCCAGCGGGCCAAGGAAGAAGGCCTACCGGTGACGCCTGACAACTTCGGCATGGATGCCA
TGACCAGAGGGTGTCTGGGCGGTATCGGCTTCTGCTTTATATCGCATACCGGACAGGTACAGCCATGCGGTTATCTGGAA
CTGGACTGCGGCAATGTGCGCGATACGCGTTTTCCTGAAATATGGCGCAAATCGGAATACTTCAGGCAGTTCCGCACGCC
GGAAGAATATGACGGCAAATGCGGGCACTGTGAATACCACAATGTATGCGGCGGCTGCCGCGCCCGTGGCTTCACCATGA
GCGGCAGCCATATGGCAGAAGAGCCTCTGTGCACCTACCAGCCGCGCAAAAAGCCCGCCGCAGACCGTAAATAA

Upstream 100 bases:

>100_bases
AAAAAGCTTGTTTCCGCATAAAACGCAATGCTCTTCCGGCGCGCCGTCCCTGCGGGGCGTACGCGCCGGAATTTTTCAGC
CGACCTGTGCAGCCCTGCAC

Downstream 100 bases:

>100_bases
ACGTCATGGCTGTGCATACAGCAGCCGGACGCGGCTTCACTCTTAACGATTCACAGGAGCTAGCATGACTGGACCCGCCG
TGCAGGATCAGGAGCTGGAT

Product: Elongator protein 3/MiaB/NifB

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MPYRYKDTHMHNANHPHGNGHPAEKKGMGAHSGAMNMPRTLEDGSPACRLIAWEVTRSCNLACKHCRAEAHTEPYPGELS
TQEAKALIDTFPEVGNPIIIFTGGDPMMRADLYELIRYATGLGLRCVLSPNGTLITGQNAVQIREAGVQRCSISIDGPSA
ELHDEFRGVPGAFEQSMRGIEFLKQAGVEFQINTTVTRDNLPYFKDIFKLCENLGAAAWHIFLLVPTGRAAQLGAQVITA
EEYEEVLNWFYDFRKTTSMHLKATCAPHYYRIMRQRAKEEGLPVTPDNFGMDAMTRGCLGGIGFCFISHTGQVQPCGYLE
LDCGNVRDTRFPEIWRKSEYFRQFRTPEEYDGKCGHCEYHNVCGGCRARGFTMSGSHMAEEPLCTYQPRKKPAADRK

Sequences:

>Translated_397_residues
MPYRYKDTHMHNANHPHGNGHPAEKKGMGAHSGAMNMPRTLEDGSPACRLIAWEVTRSCNLACKHCRAEAHTEPYPGELS
TQEAKALIDTFPEVGNPIIIFTGGDPMMRADLYELIRYATGLGLRCVLSPNGTLITGQNAVQIREAGVQRCSISIDGPSA
ELHDEFRGVPGAFEQSMRGIEFLKQAGVEFQINTTVTRDNLPYFKDIFKLCENLGAAAWHIFLLVPTGRAAQLGAQVITA
EEYEEVLNWFYDFRKTTSMHLKATCAPHYYRIMRQRAKEEGLPVTPDNFGMDAMTRGCLGGIGFCFISHTGQVQPCGYLE
LDCGNVRDTRFPEIWRKSEYFRQFRTPEEYDGKCGHCEYHNVCGGCRARGFTMSGSHMAEEPLCTYQPRKKPAADRK
>Mature_396_residues
PYRYKDTHMHNANHPHGNGHPAEKKGMGAHSGAMNMPRTLEDGSPACRLIAWEVTRSCNLACKHCRAEAHTEPYPGELST
QEAKALIDTFPEVGNPIIIFTGGDPMMRADLYELIRYATGLGLRCVLSPNGTLITGQNAVQIREAGVQRCSISIDGPSAE
LHDEFRGVPGAFEQSMRGIEFLKQAGVEFQINTTVTRDNLPYFKDIFKLCENLGAAAWHIFLLVPTGRAAQLGAQVITAE
EYEEVLNWFYDFRKTTSMHLKATCAPHYYRIMRQRAKEEGLPVTPDNFGMDAMTRGCLGGIGFCFISHTGQVQPCGYLEL
DCGNVRDTRFPEIWRKSEYFRQFRTPEEYDGKCGHCEYHNVCGGCRARGFTMSGSHMAEEPLCTYQPRKKPAADRK

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 44459; Mature: 44328

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYRYKDTHMHNANHPHGNGHPAEKKGMGAHSGAMNMPRTLEDGSPACRLIAWEVTRSCN
CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCH
LACKHCRAEAHTEPYPGELSTQEAKALIDTFPEVGNPIIIFTGGDPMMRADLYELIRYAT
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHC
GLGLRCVLSPNGTLITGQNAVQIREAGVQRCSISIDGPSAELHDEFRGVPGAFEQSMRGI
CCCEEEEECCCCCEEECCCHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHH
EFLKQAGVEFQINTTVTRDNLPYFKDIFKLCENLGAAAWHIFLLVPTGRAAQLGAQVITA
HHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHCCH
EEYEEVLNWFYDFRKTTSMHLKATCAPHYYRIMRQRAKEEGLPVTPDNFGMDAMTRGCLG
HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
GIGFCFISHTGQVQPCGYLELDCGNVRDTRFPEIWRKSEYFRQFRTPEEYDGKCGHCEYH
HHHHEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCHH
NVCGGCRARGFTMSGSHMAEEPLCTYQPRKKPAADRK
HHCCCHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PYRYKDTHMHNANHPHGNGHPAEKKGMGAHSGAMNMPRTLEDGSPACRLIAWEVTRSCN
CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCH
LACKHCRAEAHTEPYPGELSTQEAKALIDTFPEVGNPIIIFTGGDPMMRADLYELIRYAT
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHC
GLGLRCVLSPNGTLITGQNAVQIREAGVQRCSISIDGPSAELHDEFRGVPGAFEQSMRGI
CCCEEEEECCCCCEEECCCHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHH
EFLKQAGVEFQINTTVTRDNLPYFKDIFKLCENLGAAAWHIFLLVPTGRAAQLGAQVITA
HHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHCCH
EEYEEVLNWFYDFRKTTSMHLKATCAPHYYRIMRQRAKEEGLPVTPDNFGMDAMTRGCLG
HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
GIGFCFISHTGQVQPCGYLELDCGNVRDTRFPEIWRKSEYFRQFRTPEEYDGKCGHCEYH
HHHHEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCHH
NVCGGCRARGFTMSGSHMAEEPLCTYQPRKKPAADRK
HHCCCHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]