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The map label for this gene is yodC [H]

Identifier: 78357567

GI number: 78357567

Start: 2544697

End: 2545332

Strand: Direct

Name: yodC [H]

Synonym: Dde_2524

Alternate gene names: 78357567

Gene position: 2544697-2545332 (Clockwise)

Preceding gene: 78357566

Following gene: 78357570

Centisome position: 68.22

GC content: 54.87

Gene sequence:

>636_bases
ATGAACTTTACCGATATTCTTGCAAAACGCCGCTCTGTAAACTTTTTTGATCCTGAAGCCGAAGTCAGCGACGCCCAGAT
ACGACGCATCATAGAAAAAGCAGCGCTGACGCCTTCCAGCTTCAACCTGCAACCCTGGAATGTCATGCTTTTCCGGGATT
CTGCCGACAAACACACGCTGCGCAAGCTGGCCATGGATCAGCCCAAGGTTTCTGAAGCCCCCGTGGTGCTGGCCATACTG
GGCGACCGCAACGGCTGGCAGGAAGGGCACCCCGTGGTGGAACGCAACTTTAAAGAAATGGTTGCCGCTGGCGGTATGAA
GCCGGAACAGCACAACTGGTTCATCAACGCCTGCAAGGGGCTGTACGGTAAAAATGAAGAAACAGCACAGGCGTTCGCCC
TGAAGAATGCAGGATTCTTTGCCATGTCACTGATGTACGCCGCTGCCGATGAAGGACTGGACACACACCCCATGGACGGT
TTCGACCACGACGGGGTCCGCAGTGCGTTCAATATACCTGACAGGTTCTGGATTCCCCTGCTGTTGTGCGTAGGCCACTT
TGACAGCAGCAAGACCCTGCTGCCCCCCAAATGGCGCAAAAGCTACGAAGATATCGTGGTCAGCTTCGGCGACTGA

Upstream 100 bases:

>100_bases
TGCCCTCTGTTCATCAGGCCGCCGGTGCGTTACACTGACAGCTAACCGCATAAAATACGCCATACAGGGCCGTCACCGGC
GGCACCATAAGGAGACGCTT

Downstream 100 bases:

>100_bases
TAACTGCGGTAGCTGAAGCCCCCGTAAGCACCTTACTGCAAACGGTGCGGGCCGGAAAAATGCCCAACCGGAAAAAGATC
GAAGTCGGAGAAATATCCGG

Product: nitroreductase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MNFTDILAKRRSVNFFDPEAEVSDAQIRRIIEKAALTPSSFNLQPWNVMLFRDSADKHTLRKLAMDQPKVSEAPVVLAIL
GDRNGWQEGHPVVERNFKEMVAAGGMKPEQHNWFINACKGLYGKNEETAQAFALKNAGFFAMSLMYAAADEGLDTHPMDG
FDHDGVRSAFNIPDRFWIPLLLCVGHFDSSKTLLPPKWRKSYEDIVVSFGD

Sequences:

>Translated_211_residues
MNFTDILAKRRSVNFFDPEAEVSDAQIRRIIEKAALTPSSFNLQPWNVMLFRDSADKHTLRKLAMDQPKVSEAPVVLAIL
GDRNGWQEGHPVVERNFKEMVAAGGMKPEQHNWFINACKGLYGKNEETAQAFALKNAGFFAMSLMYAAADEGLDTHPMDG
FDHDGVRSAFNIPDRFWIPLLLCVGHFDSSKTLLPPKWRKSYEDIVVSFGD
>Mature_211_residues
MNFTDILAKRRSVNFFDPEAEVSDAQIRRIIEKAALTPSSFNLQPWNVMLFRDSADKHTLRKLAMDQPKVSEAPVVLAIL
GDRNGWQEGHPVVERNFKEMVAAGGMKPEQHNWFINACKGLYGKNEETAQAFALKNAGFFAMSLMYAAADEGLDTHPMDG
FDHDGVRSAFNIPDRFWIPLLLCVGHFDSSKTLLPPKWRKSYEDIVVSFGD

Specific function: Putative nitroreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23806; Mature: 23806

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFTDILAKRRSVNFFDPEAEVSDAQIRRIIEKAALTPSSFNLQPWNVMLFRDSADKHTL
CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHH
RKLAMDQPKVSEAPVVLAILGDRNGWQEGHPVVERNFKEMVAAGGMKPEQHNWFINACKG
HHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LYGKNEETAQAFALKNAGFFAMSLMYAAADEGLDTHPMDGFDHDGVRSAFNIPDRFWIPL
HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHH
LLCVGHFDSSKTLLPPKWRKSYEDIVVSFGD
HHHHHCCCCCCCCCCCHHHCCHHHEEEECCC
>Mature Secondary Structure
MNFTDILAKRRSVNFFDPEAEVSDAQIRRIIEKAALTPSSFNLQPWNVMLFRDSADKHTL
CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHH
RKLAMDQPKVSEAPVVLAILGDRNGWQEGHPVVERNFKEMVAAGGMKPEQHNWFINACKG
HHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LYGKNEETAQAFALKNAGFFAMSLMYAAADEGLDTHPMDGFDHDGVRSAFNIPDRFWIPL
HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHH
LLCVGHFDSSKTLLPPKWRKSYEDIVVSFGD
HHHHHCCCCCCCCCCCHHHCCHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]