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The map label for this gene is nusB

Identifier: 78357481

GI number: 78357481

Start: 2458725

End: 2459189

Strand: Direct

Name: nusB

Synonym: Dde_2438

Alternate gene names: 78357481

Gene position: 2458725-2459189 (Clockwise)

Preceding gene: 78357480

Following gene: 78357482

Centisome position: 65.91

GC content: 57.63

Gene sequence:

>465_bases
ATGGCCGCAAAAGGTAACAATTCATCGCGGCGCTCTTCGCGGGCGCTTGCTTTTCAGGTTCTTTACGGGCTTAACTTTTC
GCCCGCCAAGGATCTGGCCCAGCTGCAGGAAGCCTACTGTGCATCGCCCGACGTGAGCGACCGCGGAGGCGAAGCGCACC
CCGTGGGGTTTGCCTGGGAACTTATCGAAGGCACATGGACCAATCAGAAAGCGCTGGACGAGATCATCACCCGTTTTGCC
CAGAACTGGCGCGTGGAGCGCATCGGCAAAATAGAACTGACCATCCTGCGCCTTGCCGTATATGAAATGCTCTACCGCGC
CGACGTACCGCCCAAAGTGGCCATCAACGAAGGCATAGAGCTTTCAAAGCAGTTCGGCGACGACAAGTCGCGCAACTTCA
TCAACGGCATACTGGATGCGGCAGCCAAGGCGCTGGAAGCAGGCACCATCACGTGCAAGTACTGA

Upstream 100 bases:

>100_bases
ACAGGCCATCGAGCGCGCCGGTTCCAAGGGCGGAAACAAAGGCGTGGAAGCTGCTTCCGCCGTTCTTGAAACGATCCGAG
TACTGGAGCAGCTGTAACAC

Downstream 100 bases:

>100_bases
TTCTGAACTCTTACCGCTCAACGACTATACATAAGGAATAGCACGGCTATGAAGTACAATCCTCAGGCCATTGAAGAGAA
GTGGCAGCATATTTGGGAAG

Product: transcription antitermination factor NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MAAKGNNSSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGTWTNQKALDEIITRFA
QNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGDDKSRNFINGILDAAAKALEAGTITCKY

Sequences:

>Translated_154_residues
MAAKGNNSSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGTWTNQKALDEIITRFA
QNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGDDKSRNFINGILDAAAKALEAGTITCKY
>Mature_153_residues
AAKGNNSSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWELIEGTWTNQKALDEIITRFAQ
NWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSKQFGDDKSRNFINGILDAAAKALEAGTITCKY

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=129, Percent_Identity=39.5348837209302, Blast_Score=86, Evalue=8e-19,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_DESDG (Q30YL1)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_388930.1
- ProteinModelPortal:   Q30YL1
- SMR:   Q30YL1
- STRING:   Q30YL1
- GeneID:   3757454
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_2438
- NMPDR:   fig|207559.3.peg.3055
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   QNWRVER
- ProtClustDB:   CLSK705089
- BioCyc:   DDES207559:DDE_2438-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17068; Mature: 16936

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKGNNSSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWE
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LIEGTWTNQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIE
HHHCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCH
LSKQFGDDKSRNFINGILDAAAKALEAGTITCKY
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure 
AAKGNNSSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGGEAHPVGFAWE
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LIEGTWTNQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIE
HHHCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCH
LSKQFGDDKSRNFINGILDAAAKALEAGTITCKY
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA