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The map label for this gene is jag [H]

Identifier: 78357436

GI number: 78357436

Start: 2416841

End: 2418154

Strand: Reverse

Name: jag [H]

Synonym: Dde_2393

Alternate gene names: 78357436

Gene position: 2418154-2416841 (Counterclockwise)

Preceding gene: 78357437

Following gene: 78357435

Centisome position: 64.83

GC content: 59.06

Gene sequence:

>1314_bases
ATGGATGAATTCAAGGAGTTTCAGGGCAAAAGTCTGGACGACGCCATCAGGGAGGCATGCCGCCACTTTGATACCGAACG
GGAAAAACTGGAGATTGATATTCTGAATGATGCCAAGTCCGGAATTTTCGGGCTTGTGGGCGCACGCAAAGCGCGCATCA
GGGCAAGAAGAATGTCGTTCGACCAGCCCGTGGCCGACAAGCGCGGCCGTTCGACGGGCTTTATGTCGCGGGAGGATTCA
CAGTCCAGAAAGGATGAATCCGCCAGAAAGGAGCGCGACACCAGAGATACCGCAGGTAAGCAGACGGATAAAAAGCCCCG
TCAGGATTCCGCCCCCGCAAAGGCTGAAAAAGACGCCGAACAGGCGCAGCCGGAAAACGCCGCACGTCCGGAAACGGAAG
AAGGACAGGAGTCCAGACCCCGTTCATCGCGTTCGCGGCGCGGCAGCAGGGGCAGAAAAGAGCAGGGCGCTTCCGGCGGC
GCACCTAAAGCCGGTAACGTCCGCAAGGGGCCTGTTTCCGGAAACGGTGAAGCTGAAGAAGCCGCTGCAGGTGCAGCTTT
TGCTGCGGCAGCCCCCCAGGCGGAAGAAACAGCAGAACAGTCTGCTGCAGAACCGGCGGAAAAAGATGAAAACGGCCGCA
GCCGTTCGCGCAGACGGCGTCCGCGTCCGCGCCGCAAGTCAGGGAGCAGAGGCGACGACGCTTCCCGCGGTCAGGATGAA
AACGCCGCCCCGGACGCTGCGCCGGAAGACTTGCTGCCCGAAGGGCTGCAGAGCGACGATTTTGATGACAGTCAGAACGG
TGACGAAGACAACGGCGATTCTGCCGGCAACGTCAATCTGGCCGATCTGGATCAGGAAAAAGTTCTTTCGCTGGTGCAGA
CAACCGTTGAAAAACTTATTCTGCCTGTCATCGGAGAAGTGCAGCTTGCCGCACGCATCGACGACAACCGCGTCAAGGTT
TCTGTAGACTGCGGTGACAATTCCGGGCTGCTCATCGGGCGCGAAGGTCAGACGCTGGCTTCGTTCCAGTATCTGGTAAA
CCGTATTGTGGCCAAGGAGCTTGGAACCCCGGTGCGTATCCAGCTGGATACCGGTGACTACCGCGAACGTCAGGACGACA
AGCTGCGCGATCTTGCGCTGCATCTTGCCGACAGGGCAAAGACGCTGGGCAAACCCCAGTCCACGCGTCCGCTCAGTTCC
TATCACCGGCGCATAGTGCACCTTGCACTGCAGGAAGATGGAGAAATCCAGACCCGAAGCAAAGGTGAAGGCCCCATGAA
AAGGGTGGTCATCCTGCGCCGGCGCAAAGGCTAA

Upstream 100 bases:

>100_bases
CTGGCTCGTCAACAACGTGCTTTCCATCGGACAGCAGTGGTGGATGCTCCGCAAGTCCTAGGCTTCGCCTGACAACTGCG
TTTGACTTCGAGGTGAATAA

Downstream 100 bases:

>100_bases
CCCGCCGCCAGCCGAAGATATGCGGAGGAAAGTCCACAGGATTTTCCTCCGCTTTCTATGTATAGTCAGCAGGTACGCCC
GTGCCGTGCCGCAACGGTTT

Product: single-stranded nucleic acid binding R3H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MDEFKEFQGKSLDDAIREACRHFDTEREKLEIDILNDAKSGIFGLVGARKARIRARRMSFDQPVADKRGRSTGFMSREDS
QSRKDESARKERDTRDTAGKQTDKKPRQDSAPAKAEKDAEQAQPENAARPETEEGQESRPRSSRSRRGSRGRKEQGASGG
APKAGNVRKGPVSGNGEAEEAAAGAAFAAAAPQAEETAEQSAAEPAEKDENGRSRSRRRRPRPRRKSGSRGDDASRGQDE
NAAPDAAPEDLLPEGLQSDDFDDSQNGDEDNGDSAGNVNLADLDQEKVLSLVQTTVEKLILPVIGEVQLAARIDDNRVKV
SVDCGDNSGLLIGREGQTLASFQYLVNRIVAKELGTPVRIQLDTGDYRERQDDKLRDLALHLADRAKTLGKPQSTRPLSS
YHRRIVHLALQEDGEIQTRSKGEGPMKRVVILRRRKG

Sequences:

>Translated_437_residues
MDEFKEFQGKSLDDAIREACRHFDTEREKLEIDILNDAKSGIFGLVGARKARIRARRMSFDQPVADKRGRSTGFMSREDS
QSRKDESARKERDTRDTAGKQTDKKPRQDSAPAKAEKDAEQAQPENAARPETEEGQESRPRSSRSRRGSRGRKEQGASGG
APKAGNVRKGPVSGNGEAEEAAAGAAFAAAAPQAEETAEQSAAEPAEKDENGRSRSRRRRPRPRRKSGSRGDDASRGQDE
NAAPDAAPEDLLPEGLQSDDFDDSQNGDEDNGDSAGNVNLADLDQEKVLSLVQTTVEKLILPVIGEVQLAARIDDNRVKV
SVDCGDNSGLLIGREGQTLASFQYLVNRIVAKELGTPVRIQLDTGDYRERQDDKLRDLALHLADRAKTLGKPQSTRPLSS
YHRRIVHLALQEDGEIQTRSKGEGPMKRVVILRRRKG
>Mature_437_residues
MDEFKEFQGKSLDDAIREACRHFDTEREKLEIDILNDAKSGIFGLVGARKARIRARRMSFDQPVADKRGRSTGFMSREDS
QSRKDESARKERDTRDTAGKQTDKKPRQDSAPAKAEKDAEQAQPENAARPETEEGQESRPRSSRSRRGSRGRKEQGASGG
APKAGNVRKGPVSGNGEAEEAAAGAAFAAAAPQAEETAEQSAAEPAEKDENGRSRSRRRRPRPRRKSGSRGDDASRGQDE
NAAPDAAPEDLLPEGLQSDDFDDSQNGDEDNGDSAGNVNLADLDQEKVLSLVQTTVEKLILPVIGEVQLAARIDDNRVKV
SVDCGDNSGLLIGREGQTLASFQYLVNRIVAKELGTPVRIQLDTGDYRERQDDKLRDLALHLADRAKTLGKPQSTRPLSS
YHRRIVHLALQEDGEIQTRSKGEGPMKRVVILRRRKG

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 48024; Mature: 48024

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEFKEFQGKSLDDAIREACRHFDTEREKLEIDILNDAKSGIFGLVGARKARIRARRMSF
CCCHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
DQPVADKRGRSTGFMSREDSQSRKDESARKERDTRDTAGKQTDKKPRQDSAPAKAEKDAE
CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
QAQPENAARPETEEGQESRPRSSRSRRGSRGRKEQGASGGAPKAGNVRKGPVSGNGEAEE
HCCCCCCCCCCCCCCHHCCCCHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHH
AAAGAAFAAAAPQAEETAEQSAAEPAEKDENGRSRSRRRRPRPRRKSGSRGDDASRGQDE
HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
NAAPDAAPEDLLPEGLQSDDFDDSQNGDEDNGDSAGNVNLADLDQEKVLSLVQTTVEKLI
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
LPVIGEVQLAARIDDNRVKVSVDCGDNSGLLIGREGQTLASFQYLVNRIVAKELGTPVRI
HHHHCCEEEEEEECCCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE
QLDTGDYRERQDDKLRDLALHLADRAKTLGKPQSTRPLSSYHRRIVHLALQEDGEIQTRS
EECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEECCC
KGEGPMKRVVILRRRKG
CCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MDEFKEFQGKSLDDAIREACRHFDTEREKLEIDILNDAKSGIFGLVGARKARIRARRMSF
CCCHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
DQPVADKRGRSTGFMSREDSQSRKDESARKERDTRDTAGKQTDKKPRQDSAPAKAEKDAE
CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
QAQPENAARPETEEGQESRPRSSRSRRGSRGRKEQGASGGAPKAGNVRKGPVSGNGEAEE
HCCCCCCCCCCCCCCHHCCCCHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHH
AAAGAAFAAAAPQAEETAEQSAAEPAEKDENGRSRSRRRRPRPRRKSGSRGDDASRGQDE
HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
NAAPDAAPEDLLPEGLQSDDFDDSQNGDEDNGDSAGNVNLADLDQEKVLSLVQTTVEKLI
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
LPVIGEVQLAARIDDNRVKVSVDCGDNSGLLIGREGQTLASFQYLVNRIVAKELGTPVRI
HHHHCCEEEEEEECCCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE
QLDTGDYRERQDDKLRDLALHLADRAKTLGKPQSTRPLSSYHRRIVHLALQEDGEIQTRS
EECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEECCC
KGEGPMKRVVILRRRKG
CCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]