Click here to switch to the map view.

The map label for this gene is hofQ [C]

Identifier: 78357403

GI number: 78357403

Start: 2381315

End: 2382763

Strand: Direct

Name: hofQ [C]

Synonym: Dde_2360

Alternate gene names: 78357403

Gene position: 2381315-2382763 (Clockwise)

Preceding gene: 78357402

Following gene: 78357404

Centisome position: 63.84

GC content: 58.45

Gene sequence:

>1449_bases
ATGACTGCTTTCAACAAAGCCACAACGCTTCTGGTATGTTTCCGCCATTTTCCGGTACTGGCTGCGGTGCTGCTGAGCGC
CGTATGCGCGCAGGCTGCCATAGTGCCCGCCGCAGTGCAGCTGGCCGCCGGCAAATCGGTCGTTCTTGAAACCGCATCCC
CTGTCCGGCGGGTTTCAGTGGCTGCGCCGGAGGTGGCACAAGTGCTGGTGCTCTCTCCCACACAGGTCTACGTAACCGGC
GTAAAGCCGGGCGGCACCACACTGACGCTGTGGAACGCTGCCGGTGCGGTGTCTCATGTATTCGACATTCAGGTTTCACC
GGATATCGCCCGCCTGAAGGAAATGCTGCACAAGCTGCTGCCGTCGGAAAAAGACATAATGGTCATGACGGTAGGTGAAT
CCATAACTCTGGCAGGCACGGTAAGCAGCCCCGCGCATATTGCCACAGCCATGGACATGGCCCGTATGTACGCCCCCGAC
AAAGTGACCAACCTCATGAAAGTCGGCGGAATGCATCAGATAATGCTTGAAGTGAAAGTCGCTGAAATGCGCCGCTCCGT
CATGCAGCGTCTGGGCATTGATCTGGCTGCCGCGTGGGGCAACAGTTTTGCCTTTACCATGCTCAACCAGCTGTTCACAC
TTGACAATCAGGACGGAACCATAGGTGTGGGCCGCACCGCCGCTGTGCTGAGCCCTAACAATACCGGCGTGTTTCAGGCA
CCGGTAGGCGGCATGACACTGACCGGCTTTCTGGATGTGCTCAAGGAAAACGGTCTTGTAAAAGTACTGGCCGAGCCCAC
GCTGGTCTGCCGGAGCGGTGAGCATGCCAGTTTTCTTGCCGGCGGCGAGATCCCCATACCTGTACCGCAGGGGCTGGGTA
CCGTGGCCATCGAATTCAAGGAATACGGCGTAACGCTGGATTTCACGCCCACGGTACTTTCGCCGCGCCAGATAAGCCTC
AAGGTTGAGCCGGAAGTCTCCGAGCTTGATTATGCCAACGTCATCCAGATCAACGGTTTCTCCATTCCCGGCATCAGCAG
CAGGCGGGCCTCCACCACGGTGGAGCTGGGCGACGGTCAGAGCTTTGCCATTGCCGGTCTGCTGCGCGATGAAGTCCGCG
AAACCATAAAAAAATACCCCGGACTGGGCGACATTCCCGTACTGGGAACCCTGTTCCGTTCTTCCAGCTGGCAGAAAAAT
GAAACCGAGCTCGTGATCATCATAACCCCGCGGCTGGCCAAACCGCTGGATATGACCGCACAGACCCTGCCCACAGACGG
CTTTCGCGAACCCACGGAATATGAATTTTTCATTCAGGGAAAAATGGAAGGCGATGCTCCTGCCGCGGCCCCTGCCGCCA
TGCGGGGCTCCGGCGATGTTCAGTCCTCAGACGGCAATCCGCCGTCCGGCATGGAAGGCGAGTTCGGCCACGTGCTCAGA
CTGCGGTAA

Upstream 100 bases:

>100_bases
CCATGCTGCGTCCTGCAGCCGCGCCCGCCAGCAAAGCGCGTGCCGCCGCTTCTGTGGAAGTCATCAGCGGAACACAGCGC
TCAACACTGAGGTTCAGGCA

Downstream 100 bases:

>100_bases
CTGCGGAGAAACAACATGAGCAGATACATCATTGCCACCTTAATACTGGCAGCGCTGGCCGGATGCACCAATGCAGGCGC
CCCGGGCACGCAGCGGCCCA

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MTAFNKATTLLVCFRHFPVLAAVLLSAVCAQAAIVPAAVQLAAGKSVVLETASPVRRVSVAAPEVAQVLVLSPTQVYVTG
VKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKEMLHKLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMYAPD
KVTNLMKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIGVGRTAAVLSPNNTGVFQA
PVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGGEIPIPVPQGLGTVAIEFKEYGVTLDFTPTVLSPRQISL
KVEPEVSELDYANVIQINGFSIPGISSRRASTTVELGDGQSFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKN
ETELVIIITPRLAKPLDMTAQTLPTDGFREPTEYEFFIQGKMEGDAPAAAPAAMRGSGDVQSSDGNPPSGMEGEFGHVLR
LR

Sequences:

>Translated_482_residues
MTAFNKATTLLVCFRHFPVLAAVLLSAVCAQAAIVPAAVQLAAGKSVVLETASPVRRVSVAAPEVAQVLVLSPTQVYVTG
VKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKEMLHKLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMYAPD
KVTNLMKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIGVGRTAAVLSPNNTGVFQA
PVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGGEIPIPVPQGLGTVAIEFKEYGVTLDFTPTVLSPRQISL
KVEPEVSELDYANVIQINGFSIPGISSRRASTTVELGDGQSFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKN
ETELVIIITPRLAKPLDMTAQTLPTDGFREPTEYEFFIQGKMEGDAPAAAPAAMRGSGDVQSSDGNPPSGMEGEFGHVLR
LR
>Mature_481_residues
TAFNKATTLLVCFRHFPVLAAVLLSAVCAQAAIVPAAVQLAAGKSVVLETASPVRRVSVAAPEVAQVLVLSPTQVYVTGV
KPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKEMLHKLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMYAPDK
VTNLMKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIGVGRTAAVLSPNNTGVFQAP
VGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGGEIPIPVPQGLGTVAIEFKEYGVTLDFTPTVLSPRQISLK
VEPEVSELDYANVIQINGFSIPGISSRRASTTVELGDGQSFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKNE
TELVIIITPRLAKPLDMTAQTLPTDGFREPTEYEFFIQGKMEGDAPAAAPAAMRGSGDVQSSDGNPPSGMEGEFGHVLRL
R

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=172, Percent_Identity=32.5581395348837, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87082242, Length=296, Percent_Identity=25.6756756756757, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 51241; Mature: 51110

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFNKATTLLVCFRHFPVLAAVLLSAVCAQAAIVPAAVQLAAGKSVVLETASPVRRVSV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHEEEC
AAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKEMLHKLL
CCCCCEEEEEECCCEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHC
PSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMYAPDKVTNLMKVGGMHQIMLEVKV
CCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEHHHHHH
AEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIGVGRTAAVLSPNNTGVFQA
HHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHEECCCCCEEECCCEEEEECCCCCCEEEC
PVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGGEIPIPVPQGLGTVAIEFK
CCCCEEHHHHHHHHHCCCEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEE
EYGVTLDFTPTVLSPRQISLKVEPEVSELDYANVIQINGFSIPGISSRRASTTVELGDGQ
CCCEEEECCCCCCCCCEEEEEECCCHHHCCCCCEEEECCEECCCCCCCCCCCEEEECCCC
SFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKNETELVIIITPRLAKPLDMTA
CEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH
QTLPTDGFREPTEYEFFIQGKMEGDAPAAAPAAMRGSGDVQSSDGNPPSGMEGEFGHVLR
HHCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
LR
EC
>Mature Secondary Structure 
TAFNKATTLLVCFRHFPVLAAVLLSAVCAQAAIVPAAVQLAAGKSVVLETASPVRRVSV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHEEEC
AAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKEMLHKLL
CCCCCEEEEEECCCEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHC
PSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMYAPDKVTNLMKVGGMHQIMLEVKV
CCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEHHHHHH
AEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIGVGRTAAVLSPNNTGVFQA
HHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHEECCCCCEEECCCEEEEECCCCCCEEEC
PVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGGEIPIPVPQGLGTVAIEFK
CCCCEEHHHHHHHHHCCCEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEE
EYGVTLDFTPTVLSPRQISLKVEPEVSELDYANVIQINGFSIPGISSRRASTTVELGDGQ
CCCEEEECCCCCCCCCEEEEEECCCHHHCCCCCEEEECCEECCCCCCCCCCCEEEECCCC
SFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKNETELVIIITPRLAKPLDMTA
CEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHH
QTLPTDGFREPTEYEFFIQGKMEGDAPAAAPAAMRGSGDVQSSDGNPPSGMEGEFGHVLR
HHCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
LR
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]