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The map label for this gene is ycaO [C]

Identifier: 78357391

GI number: 78357391

Start: 2367005

End: 2368753

Strand: Direct

Name: ycaO [C]

Synonym: Dde_2348

Alternate gene names: 78357391

Gene position: 2367005-2368753 (Clockwise)

Preceding gene: 78357390

Following gene: 78357392

Centisome position: 63.45

GC content: 59.41

Gene sequence:

>1749_bases
ATGATACAACTCTCCTCATGCCCCAAGGGCTGCTCTCAGGATCTGGATAAAGCCGTTCCCGCGGCAGAAACCGTCAGAAT
GGCCCGCGGCAGACTGCAAAGCCTGAAGCTTGATCTTCTGGCTGAAACGAGACGTGTAGACACCGGCAGGCTGGGTATTC
CTGTTTTTTTAAGTGTGTGCGGGCATGACGCACGCACTGTAATGCCCACGCGTAAACAGATGGGTAAAGGAGCCTCGGCG
TCACAGGCCGAAGCCTCGGCTCTGATGGAACTGGTGGAACGCTACAGTTATTTCCGTTTTATGCAGCAGACAGAGACGGT
GTTTTCCGGCACCTGGTCAGAGGCAGAGGAGCATTTCCGGGGGCAGATTATGCCTGTGGAGCAACTGCTCCTTTCGGTTG
GCGACACCTCGGACGCAGCAGCCGTACGCCCGCTGCTCGACCTTGTCCGCTGGCAGTTCTGTCCGGCTACGCAAATCAAC
TCAGGGCAGCGTATCGCCCTGCCGCTGGACTGGTTCCGCACTCTGAATGAGTTCAACGGCTCTTCTGCGGGCAATACCTA
CGAAGAAGCGGTTCTTCAGGGGCTTTGCGAACTTGTCGAGCGGCATGTGTGCTGCATTGCCGCACGCGACAGGCAACCAC
AGCCCACAATCATGCCGCAGAGCACGGATGATGCCGTTTTGCTCGGCCTGCTGGACAAATTCACAGCCAACGGCATCGAG
GTGCTGCTCAAAGACTTCAGCATGGAACTGCCGGTGCCCACCGTGGCCGCTCTGGCGTACGATCCCTCAACGCTCGGCAC
ACGCTCGGAAATAGTGTTCACGGCCGGTACCGCAGCCACTCCGGCCAAGGCCGCCATCCGCGCACTGACAGAGGTGGCCC
AGCTGGCAGGCGATTTTGAAACCGGTTCATGCTATGAAGCCTCCGGCCTGCCCAAGTACACCAGTGAGGCAGAAACCGGC
TGGCTGAAAACAGGTCCGCAGGTGGCCTTTTCCGACCTTCCCCACATCGGCGACAACGACATATTTGCCGAGCTGACACA
CCTGACCGCAAAGCTCGGCATGGACGGCTTCCATGCATATTGCATAGACACAACCGCTCCGGAGCTGGACATTCCGGCAG
TATACACCATTGTTCCGGGCTTCCGGTTCCGCGAGCGTGACAAAAACGCCTCTCCGGGCCTGTTCATAGGCCGTATTCTG
AGCGAGCAGTACCCGCCGGAAGCCGCCGCAGACGGGCTGGAGCAGATACGCAAAGTATACGGAGACCTGCCCTGCCTGCC
TTTTTATCAGGGAATCATCGCTCTGCGGCAGCAGCAGTACCGCCAAGCCGCTTCCTGCTTTGCGCAGGCTCAGCCCGTGC
AGCCGGAAAAGGGTTCGCAGGCCATGGCGGCCTTTTATCACGGCTACAGTCTTACGCTGGCCGATGCATGGGCAGAGGCT
TTGCCCCTGCTCGACCGCGCCGTGTCACTATGCCCGCAGATGAAAGAATACATCAACCTGCGCGGAGTGGCCCGCTACCG
GTTGCAGCAATACGAAGCTGCAGCGCACGATTTCCGGCACCTGCTGCAGACTCTGGACAGGGAGTCCGCCGTGGATCATG
TGAATCTGGGGCTGTGCCATGAAAAGACCGGTAATACAGCCGCCGCTCTGCAGTGCTACCGCGATGCGCTTGCCATAGAC
CCTGCCCTGCAACGGGCCCGCCAACGCCTGCAGGCTCTGGAAAATGCCGTATTGTCCGCATCTGCCTGA

Upstream 100 bases:

>100_bases
GGCATGAAAATGCATCACGCCGTAAACCAGCGGCAGTTCAGCTGCCGGACCCGGACAGTCCGCCTGCCGCAGCTGCCTGC
TACATTCAGGGTGCACCGCC

Downstream 100 bases:

>100_bases
GCGCCGCAGCCCCTGCCTGAGCGCCGCAGCCCCTGCCGCTCAGTTTTGCACAGCTCTGCAGCATATTTTGCTTTACCGCG
GCAATAGCCTGTGGAATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MIQLSSCPKGCSQDLDKAVPAAETVRMARGRLQSLKLDLLAETRRVDTGRLGIPVFLSVCGHDARTVMPTRKQMGKGASA
SQAEASALMELVERYSYFRFMQQTETVFSGTWSEAEEHFRGQIMPVEQLLLSVGDTSDAAAVRPLLDLVRWQFCPATQIN
SGQRIALPLDWFRTLNEFNGSSAGNTYEEAVLQGLCELVERHVCCIAARDRQPQPTIMPQSTDDAVLLGLLDKFTANGIE
VLLKDFSMELPVPTVAALAYDPSTLGTRSEIVFTAGTAATPAKAAIRALTEVAQLAGDFETGSCYEASGLPKYTSEAETG
WLKTGPQVAFSDLPHIGDNDIFAELTHLTAKLGMDGFHAYCIDTTAPELDIPAVYTIVPGFRFRERDKNASPGLFIGRIL
SEQYPPEAAADGLEQIRKVYGDLPCLPFYQGIIALRQQQYRQAASCFAQAQPVQPEKGSQAMAAFYHGYSLTLADAWAEA
LPLLDRAVSLCPQMKEYINLRGVARYRLQQYEAAAHDFRHLLQTLDRESAVDHVNLGLCHEKTGNTAAALQCYRDALAID
PALQRARQRLQALENAVLSASA

Sequences:

>Translated_582_residues
MIQLSSCPKGCSQDLDKAVPAAETVRMARGRLQSLKLDLLAETRRVDTGRLGIPVFLSVCGHDARTVMPTRKQMGKGASA
SQAEASALMELVERYSYFRFMQQTETVFSGTWSEAEEHFRGQIMPVEQLLLSVGDTSDAAAVRPLLDLVRWQFCPATQIN
SGQRIALPLDWFRTLNEFNGSSAGNTYEEAVLQGLCELVERHVCCIAARDRQPQPTIMPQSTDDAVLLGLLDKFTANGIE
VLLKDFSMELPVPTVAALAYDPSTLGTRSEIVFTAGTAATPAKAAIRALTEVAQLAGDFETGSCYEASGLPKYTSEAETG
WLKTGPQVAFSDLPHIGDNDIFAELTHLTAKLGMDGFHAYCIDTTAPELDIPAVYTIVPGFRFRERDKNASPGLFIGRIL
SEQYPPEAAADGLEQIRKVYGDLPCLPFYQGIIALRQQQYRQAASCFAQAQPVQPEKGSQAMAAFYHGYSLTLADAWAEA
LPLLDRAVSLCPQMKEYINLRGVARYRLQQYEAAAHDFRHLLQTLDRESAVDHVNLGLCHEKTGNTAAALQCYRDALAID
PALQRARQRLQALENAVLSASA
>Mature_582_residues
MIQLSSCPKGCSQDLDKAVPAAETVRMARGRLQSLKLDLLAETRRVDTGRLGIPVFLSVCGHDARTVMPTRKQMGKGASA
SQAEASALMELVERYSYFRFMQQTETVFSGTWSEAEEHFRGQIMPVEQLLLSVGDTSDAAAVRPLLDLVRWQFCPATQIN
SGQRIALPLDWFRTLNEFNGSSAGNTYEEAVLQGLCELVERHVCCIAARDRQPQPTIMPQSTDDAVLLGLLDKFTANGIE
VLLKDFSMELPVPTVAALAYDPSTLGTRSEIVFTAGTAATPAKAAIRALTEVAQLAGDFETGSCYEASGLPKYTSEAETG
WLKTGPQVAFSDLPHIGDNDIFAELTHLTAKLGMDGFHAYCIDTTAPELDIPAVYTIVPGFRFRERDKNASPGLFIGRIL
SEQYPPEAAADGLEQIRKVYGDLPCLPFYQGIIALRQQQYRQAASCFAQAQPVQPEKGSQAMAAFYHGYSLTLADAWAEA
LPLLDRAVSLCPQMKEYINLRGVARYRLQQYEAAAHDFRHLLQTLDRESAVDHVNLGLCHEKTGNTAAALQCYRDALAID
PALQRARQRLQALENAVLSASA

Specific function: Unknown

COG id: COG1944

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0142 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017667
- InterPro:   IPR003776 [H]

Pfam domain/function: PF02624 YcaO [H]

EC number: NA

Molecular weight: Translated: 63775; Mature: 63775

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLSSCPKGCSQDLDKAVPAAETVRMARGRLQSLKLDLLAETRRVDTGRLGIPVFLSVC
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
GHDARTVMPTRKQMGKGASASQAEASALMELVERYSYFRFMQQTETVFSGTWSEAEEHFR
CCCCHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
GQIMPVEQLLLSVGDTSDAAAVRPLLDLVRWQFCPATQINSGQRIALPLDWFRTLNEFNG
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCC
SSAGNTYEEAVLQGLCELVERHVCCIAARDRQPQPTIMPQSTDDAVLLGLLDKFTANGIE
CCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VLLKDFSMELPVPTVAALAYDPSTLGTRSEIVFTAGTAATPAKAAIRALTEVAQLAGDFE
HHHHHHCCCCCCCHHHHHEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
TGSCYEASGLPKYTSEAETGWLKTGPQVAFSDLPHIGDNDIFAELTHLTAKLGMDGFHAY
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
CIDTTAPELDIPAVYTIVPGFRFRERDKNASPGLFIGRILSEQYPPEAAADGLEQIRKVY
EEECCCCCCCCCCCEECCCCCHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
GDLPCLPFYQGIIALRQQQYRQAASCFAQAQPVQPEKGSQAMAAFYHGYSLTLADAWAEA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEHHHHHHHHH
LPLLDRAVSLCPQMKEYINLRGVARYRLQQYEAAAHDFRHLLQTLDRESAVDHVNLGLCH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
EKTGNTAAALQCYRDALAIDPALQRARQRLQALENAVLSASA
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIQLSSCPKGCSQDLDKAVPAAETVRMARGRLQSLKLDLLAETRRVDTGRLGIPVFLSVC
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
GHDARTVMPTRKQMGKGASASQAEASALMELVERYSYFRFMQQTETVFSGTWSEAEEHFR
CCCCHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
GQIMPVEQLLLSVGDTSDAAAVRPLLDLVRWQFCPATQINSGQRIALPLDWFRTLNEFNG
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCC
SSAGNTYEEAVLQGLCELVERHVCCIAARDRQPQPTIMPQSTDDAVLLGLLDKFTANGIE
CCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VLLKDFSMELPVPTVAALAYDPSTLGTRSEIVFTAGTAATPAKAAIRALTEVAQLAGDFE
HHHHHHCCCCCCCHHHHHEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
TGSCYEASGLPKYTSEAETGWLKTGPQVAFSDLPHIGDNDIFAELTHLTAKLGMDGFHAY
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
CIDTTAPELDIPAVYTIVPGFRFRERDKNASPGLFIGRILSEQYPPEAAADGLEQIRKVY
EEECCCCCCCCCCCEECCCCCHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
GDLPCLPFYQGIIALRQQQYRQAASCFAQAQPVQPEKGSQAMAAFYHGYSLTLADAWAEA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEHHHHHHHHH
LPLLDRAVSLCPQMKEYINLRGVARYRLQQYEAAAHDFRHLLQTLDRESAVDHVNLGLCH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
EKTGNTAAALQCYRDALAIDPALQRARQRLQALENAVLSASA
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]