| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is glnD [H]
Identifier: 78357352
GI number: 78357352
Start: 2325889
End: 2328507
Strand: Reverse
Name: glnD [H]
Synonym: Dde_2309
Alternate gene names: 78357352
Gene position: 2328507-2325889 (Counterclockwise)
Preceding gene: 78357353
Following gene: 78357346
Centisome position: 62.42
GC content: 61.4
Gene sequence:
>2619_bases ATGCCTGTGGAAAAACTGACGCCGTCCGGCCATGACGCATATGAAGCCGCTGATTCCTGTGCCGTGCTCATGGCCGGACG TGCGGTCTTTGACTCGCAGCTCGGGGGACCGCCCGACGGAAGGCTGCCCCGCTACGAGCGCGAACTGAGCGCCCTGCTGG ACAGATATTTTGTCTCGCGCCTTTCTTCAACGGGAGCCGCCGGCGGCAAAGTGGCATTGGTGGCCACAGGCGGGTACGGG CGGGGCGAACTGTGCCCCGGCTCAGATATTGATATCCTCATTCTCTGTCGCCGCTCCATACCGCCGCAGGCCATCGACCT TGCGCAGCCGCTGTTTCTGCCTTTGTGGGATGCAGGGTATGCACTCGGCCACGGGTTCCGCACTGTGGGAGATTGCCTGA AACTGGCAGCAAAGGACCATAAGGTACTGGCCTCTTTGCTTGATGCGCGCTTTGTTACCGGCAGCGAGGCTGTATTTGCT GAAATGATGGAGCGTCTGGAGGAAAAGGTGCTCCCGCGGCGCGGTAAAGCTTTTGCGGACTGGCTGGACACGGAGCATGA ACGCCGGCTGGCATCGCATGGCGACGGAGCACTGCTGCTGGAGCCCAACCTGAAGGAGGGGCTTGGCGGACTGCGGGATT ATCACCTGATCCGCTGGATGCTCATGTGCCGGTTTGGCATCGGCTGCGGGCTGCACGCGGCGCTGCGGCGTGTGGGTTTT TCTGCAGAAGATGAAGCACTGCTGCGTACCAACGTGGACTTTCTGCACGATGTGCGGTGCAGGCTGCACGCCCTGACCGG CAGGCGCAGCGATCTGCTGCCGCTTGACCTGCAGCCGGATGTGGCACGCCGGATGGGGTATGCCGACGGTGGCGGGCTGT TGGCAGTGGAGCATTTTCTGGGCGAACTGCACCGCTGTATGGGGTCTGTCAAGGCGCTGGCGCTGGCCTGCCGCGAAGCT TTGGCCATGAACACGTCCGCCGGGTTGTCGGCGGAGCAGGTAATGCAGGAAGCCACACCGCGTACGGTGCTCAGCCTTAT GAAGCAGAGCGCAGCGCAGCCGGAAAAAGCGCTGGCAGGGTGGCGCATGCGCCGTTCTCTTGTCCGGCTGGCTACGGAGC GGGCTGCTGAACTGGCGGCACTGCCCGATCTGGGGCCTGCGTTTGCCGACCTGCTCAGCGGGGGCAATGCCTGGGATGTT TTCGGACGTCTGGACGACACCGGCCTGTTGAGTGCTCTGGTGCCGGAGTACGGGGTGGTGCGCGACCGTGTGCAGTTTGA CGGGTTTCATACCTATCCGGTAGGGCTGCACACGCTTGTTACTCTGCGCCATCTGGAAGATTCCGCTTCTGCCGGCAGCG TGGCGGCAGAGCTCTGGAACTCGCTTGATACGTCGGGCAGGGTTTCGGTGATGTTCGGGGCGCTGCTGCACGATCTTGGC AAAACCGGCTCTGCCGATCATTCGGTAACGGGTGCCGCAGTGGCGGACAACCTGCTGCGCCGGTGGGAACTGGGCGATGC GCAGCGCGAGGAAATAGTGTTTCTGGTGCGTAATCACCTGCTGCTTTCCCGTACAGCGTTGCGCCGTGATCTTGCTGACG AATCGGTGGTGGCCCGCTGTGCAGGCACGGCGGGAAGCATGCGGCGCCTTGATCTGCTCTTTCTGCTTGCCTGTGCCGAT GCGCGGGCCACCGGCCCGCGTGCGTGGAACAGCTGGATAAGCGGCCTGCTTGAAGAACTGTACCGTAAAGTGCGCAATAT GCTTAGTGACAGCGAACTGGGAACGCCGCAGGCTGTTTCTGATATGCTGAGTCATTACGATATGGTGCGCGAGCTTGTGG GCAGAAACGGACGCAGGCTGCCCTATACGCCGGAACAGGCGGAAAGCTGGCTGGAAAGAGTGCCTTCGCGGTACATGCTG TCTACCGAGCCTGAGGACGTACTGCGCCATATCGCACTTATGCTGCGGCTGGAAAGAGACATTGAGGACGCCCGCAGGCG TCTGGGCGAAAAGCGGGGTGCCAACGGGGTTGTTCTGCTGGAGGCGCGGGACGCCGGTGACGTGTGGGAGCTGGTTTTTG CCGCCAAGGACCAGCCGGGACTTTTTTCGGTGCTGACCGGCGTACTGGCCCTGCACGGGCTGGATGTGTTTTCTGCCGAT GCTTTTGTCTGGGGGGGCGGCGTGGTGCTGGATGTCTTCCGGGTATCGCCTCCTCCTGACCCGCTGTATGCCAGAGATTT CTGGGCAAAGGTCAGAGGTTCTGTCCATTTTGCCCTTACGGGCAAGCTGTCGCTTGATTTCCGGTTGGAAGAAATGCGCA GCAGGTCGCTGAGCCCTGTGCAGAAGGCAGGAGGCGGGCGTACGGAAGTGACCATCGACAATGCCATTTCCGATTTCTAT TCTGTCATAGATATCACTGCACCAGACAGGCCCGTGCTGCTGTACGACATTGCCCGCACCATGCAGGCCATGCGGCTTGA TATCCAGTTTGCCCGCATAGCCACCCACGGAATGCAGACGTCTGATTCTTTTTCGGTGCGCGATGTCTTTGGCAACAAGC TGCTTGAAGAACAGCAGTGCGAGGAGGTACGGCAGGCCCTGCTGCATGCCGTGGCCTGA
Upstream 100 bases:
>100_bases ATCATTCCCGTGGATGACGTGGTGCGCATCCGGACGGGAGAGACCGGAACCGGCGCTGTCTGATCTGTCTGCATCCTGAA AAGCAACCTGTGGAGAGTTG
Downstream 100 bases:
>100_bases TTTTGACCGGATGCTTCTGTTGCCTGCGCGGTGTGGCGTTGCGCCCCGCGGCAGTTTACGGACCTGTGCATACAGTAAAA CGGGGAGCCCCTGATGGAGC
Product: metal dependent phosphohydrolase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 872; Mature: 871
Protein sequence:
>872_residues MPVEKLTPSGHDAYEAADSCAVLMAGRAVFDSQLGGPPDGRLPRYERELSALLDRYFVSRLSSTGAAGGKVALVATGGYG RGELCPGSDIDILILCRRSIPPQAIDLAQPLFLPLWDAGYALGHGFRTVGDCLKLAAKDHKVLASLLDARFVTGSEAVFA EMMERLEEKVLPRRGKAFADWLDTEHERRLASHGDGALLLEPNLKEGLGGLRDYHLIRWMLMCRFGIGCGLHAALRRVGF SAEDEALLRTNVDFLHDVRCRLHALTGRRSDLLPLDLQPDVARRMGYADGGGLLAVEHFLGELHRCMGSVKALALACREA LAMNTSAGLSAEQVMQEATPRTVLSLMKQSAAQPEKALAGWRMRRSLVRLATERAAELAALPDLGPAFADLLSGGNAWDV FGRLDDTGLLSALVPEYGVVRDRVQFDGFHTYPVGLHTLVTLRHLEDSASAGSVAAELWNSLDTSGRVSVMFGALLHDLG KTGSADHSVTGAAVADNLLRRWELGDAQREEIVFLVRNHLLLSRTALRRDLADESVVARCAGTAGSMRRLDLLFLLACAD ARATGPRAWNSWISGLLEELYRKVRNMLSDSELGTPQAVSDMLSHYDMVRELVGRNGRRLPYTPEQAESWLERVPSRYML STEPEDVLRHIALMLRLERDIEDARRRLGEKRGANGVVLLEARDAGDVWELVFAAKDQPGLFSVLTGVLALHGLDVFSAD AFVWGGGVVLDVFRVSPPPDPLYARDFWAKVRGSVHFALTGKLSLDFRLEEMRSRSLSPVQKAGGGRTEVTIDNAISDFY SVIDITAPDRPVLLYDIARTMQAMRLDIQFARIATHGMQTSDSFSVRDVFGNKLLEEQQCEEVRQALLHAVA
Sequences:
>Translated_872_residues MPVEKLTPSGHDAYEAADSCAVLMAGRAVFDSQLGGPPDGRLPRYERELSALLDRYFVSRLSSTGAAGGKVALVATGGYG RGELCPGSDIDILILCRRSIPPQAIDLAQPLFLPLWDAGYALGHGFRTVGDCLKLAAKDHKVLASLLDARFVTGSEAVFA EMMERLEEKVLPRRGKAFADWLDTEHERRLASHGDGALLLEPNLKEGLGGLRDYHLIRWMLMCRFGIGCGLHAALRRVGF SAEDEALLRTNVDFLHDVRCRLHALTGRRSDLLPLDLQPDVARRMGYADGGGLLAVEHFLGELHRCMGSVKALALACREA LAMNTSAGLSAEQVMQEATPRTVLSLMKQSAAQPEKALAGWRMRRSLVRLATERAAELAALPDLGPAFADLLSGGNAWDV FGRLDDTGLLSALVPEYGVVRDRVQFDGFHTYPVGLHTLVTLRHLEDSASAGSVAAELWNSLDTSGRVSVMFGALLHDLG KTGSADHSVTGAAVADNLLRRWELGDAQREEIVFLVRNHLLLSRTALRRDLADESVVARCAGTAGSMRRLDLLFLLACAD ARATGPRAWNSWISGLLEELYRKVRNMLSDSELGTPQAVSDMLSHYDMVRELVGRNGRRLPYTPEQAESWLERVPSRYML STEPEDVLRHIALMLRLERDIEDARRRLGEKRGANGVVLLEARDAGDVWELVFAAKDQPGLFSVLTGVLALHGLDVFSAD AFVWGGGVVLDVFRVSPPPDPLYARDFWAKVRGSVHFALTGKLSLDFRLEEMRSRSLSPVQKAGGGRTEVTIDNAISDFY SVIDITAPDRPVLLYDIARTMQAMRLDIQFARIATHGMQTSDSFSVRDVFGNKLLEEQQCEEVRQALLHAVA >Mature_871_residues PVEKLTPSGHDAYEAADSCAVLMAGRAVFDSQLGGPPDGRLPRYERELSALLDRYFVSRLSSTGAAGGKVALVATGGYGR GELCPGSDIDILILCRRSIPPQAIDLAQPLFLPLWDAGYALGHGFRTVGDCLKLAAKDHKVLASLLDARFVTGSEAVFAE MMERLEEKVLPRRGKAFADWLDTEHERRLASHGDGALLLEPNLKEGLGGLRDYHLIRWMLMCRFGIGCGLHAALRRVGFS AEDEALLRTNVDFLHDVRCRLHALTGRRSDLLPLDLQPDVARRMGYADGGGLLAVEHFLGELHRCMGSVKALALACREAL AMNTSAGLSAEQVMQEATPRTVLSLMKQSAAQPEKALAGWRMRRSLVRLATERAAELAALPDLGPAFADLLSGGNAWDVF GRLDDTGLLSALVPEYGVVRDRVQFDGFHTYPVGLHTLVTLRHLEDSASAGSVAAELWNSLDTSGRVSVMFGALLHDLGK TGSADHSVTGAAVADNLLRRWELGDAQREEIVFLVRNHLLLSRTALRRDLADESVVARCAGTAGSMRRLDLLFLLACADA RATGPRAWNSWISGLLEELYRKVRNMLSDSELGTPQAVSDMLSHYDMVRELVGRNGRRLPYTPEQAESWLERVPSRYMLS TEPEDVLRHIALMLRLERDIEDARRRLGEKRGANGVVLLEARDAGDVWELVFAAKDQPGLFSVLTGVLALHGLDVFSADA FVWGGGVVLDVFRVSPPPDPLYARDFWAKVRGSVHFALTGKLSLDFRLEEMRSRSLSPVQKAGGGRTEVTIDNAISDFYS VIDITAPDRPVLLYDIARTMQAMRLDIQFARIATHGMQTSDSFSVRDVFGNKLLEEQQCEEVRQALLHAVA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=836, Percent_Identity=27.3923444976077, Blast_Score=224, Evalue=3e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 95682; Mature: 95551
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVEKLTPSGHDAYEAADSCAVLMAGRAVFDSQLGGPPDGRLPRYERELSALLDRYFVSR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH LSSTGAAGGKVALVATGGYGRGELCPGSDIDILILCRRSIPPQAIDLAQPLFLPLWDAGY HHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHH ALGHGFRTVGDCLKLAAKDHKVLASLLDARFVTGSEAVFAEMMERLEEKVLPRRGKAFAD HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHH WLDTEHERRLASHGDGALLLEPNLKEGLGGLRDYHLIRWMLMCRFGIGCGLHAALRRVGF HHCCHHHHHHHHCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC SAEDEALLRTNVDFLHDVRCRLHALTGRRSDLLPLDLQPDVARRMGYADGGGLLAVEHFL CCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH GELHRCMGSVKALALACREALAMNTSAGLSAEQVMQEATPRTVLSLMKQSAAQPEKALAG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH WRMRRSLVRLATERAAELAALPDLGPAFADLLSGGNAWDVFGRLDDTGLLSALVPEYGVV HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEECCCCCCCHHHHHHHHCCHHHH RDRVQFDGFHTYPVGLHTLVTLRHLEDSASAGSVAAELWNSLDTSGRVSVMFGALLHDLG HHHHHCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC KTGSADHSVTGAAVADNLLRRWELGDAQREEIVFLVRNHLLLSRTALRRDLADESVVARC CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH AGTAGSMRRLDLLFLLACADARATGPRAWNSWISGLLEELYRKVRNMLSDSELGTPQAVS CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH DMLSHYDMVRELVGRNGRRLPYTPEQAESWLERVPSRYMLSTEPEDVLRHIALMLRLERD HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH IEDARRRLGEKRGANGVVLLEARDAGDVWELVFAAKDQPGLFSVLTGVLALHGLDVFSAD HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHCCC AFVWGGGVVLDVFRVSPPPDPLYARDFWAKVRGSVHFALTGKLSLDFRLEEMRSRSLSPV CEEECCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECEEECEEHHHHHCCCCCHH QKAGGGRTEVTIDNAISDFYSVIDITAPDRPVLLYDIARTMQAMRLDIQFARIATHGMQT HHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCC SDSFSVRDVFGNKLLEEQQCEEVRQALLHAVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PVEKLTPSGHDAYEAADSCAVLMAGRAVFDSQLGGPPDGRLPRYERELSALLDRYFVSR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH LSSTGAAGGKVALVATGGYGRGELCPGSDIDILILCRRSIPPQAIDLAQPLFLPLWDAGY HHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHH ALGHGFRTVGDCLKLAAKDHKVLASLLDARFVTGSEAVFAEMMERLEEKVLPRRGKAFAD HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHH WLDTEHERRLASHGDGALLLEPNLKEGLGGLRDYHLIRWMLMCRFGIGCGLHAALRRVGF HHCCHHHHHHHHCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC SAEDEALLRTNVDFLHDVRCRLHALTGRRSDLLPLDLQPDVARRMGYADGGGLLAVEHFL CCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH GELHRCMGSVKALALACREALAMNTSAGLSAEQVMQEATPRTVLSLMKQSAAQPEKALAG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH WRMRRSLVRLATERAAELAALPDLGPAFADLLSGGNAWDVFGRLDDTGLLSALVPEYGVV HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEECCCCCCCHHHHHHHHCCHHHH RDRVQFDGFHTYPVGLHTLVTLRHLEDSASAGSVAAELWNSLDTSGRVSVMFGALLHDLG HHHHHCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC KTGSADHSVTGAAVADNLLRRWELGDAQREEIVFLVRNHLLLSRTALRRDLADESVVARC CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH AGTAGSMRRLDLLFLLACADARATGPRAWNSWISGLLEELYRKVRNMLSDSELGTPQAVS CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH DMLSHYDMVRELVGRNGRRLPYTPEQAESWLERVPSRYMLSTEPEDVLRHIALMLRLERD HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH IEDARRRLGEKRGANGVVLLEARDAGDVWELVFAAKDQPGLFSVLTGVLALHGLDVFSAD HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHCCC AFVWGGGVVLDVFRVSPPPDPLYARDFWAKVRGSVHFALTGKLSLDFRLEEMRSRSLSPV CEEECCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECEEECEEHHHHHCCCCCHH QKAGGGRTEVTIDNAISDFYSVIDITAPDRPVLLYDIARTMQAMRLDIQFARIATHGMQT HHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCC SDSFSVRDVFGNKLLEEQQCEEVRQALLHAVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA