| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is trxB [H]
Identifier: 78357194
GI number: 78357194
Start: 2196462
End: 2197355
Strand: Direct
Name: trxB [H]
Synonym: Dde_2151
Alternate gene names: 78357194
Gene position: 2196462-2197355 (Clockwise)
Preceding gene: 78357193
Following gene: 78357195
Centisome position: 58.88
GC content: 50.45
Gene sequence:
>894_bases ATGCATACCCCCCTAGTCATCATCGGTTCCGGCCCTGCCGGACTGTCTTCCGCCATCTACACCTGCAGATCCGGCATTGA TACAATCGTATTCGGCTCAAAGCCCAAAGTTGCCGGAGATTATGAGATAGACAACTATTTCGGATTTGAAGAAACAATTT CCGGCAAAGAACTGCTGGAAAAAGGGCGGGCGCAGGCCGAGCGCTTCGGTGCCCGCTTTAAAGAAGACAGGGTGCTCTCT GTACATCATAACGAAAGCGGAGGCTTTCATATAAAAACTGAGCACGAAGAATTTGACGCATGCGCGGTAATTCTGGCCAC CGGCGTGGGCAGAGTCCGTCCGGGCATAAGCAACCTGAAAGATTACGAGGGCAAAGGAGTATCCTACTGCGTAAGTTGTG ACGGTTTTTTTTATAAAAACCGAAAAGTTATCGTAGTCGGAGAAGGCATCTACGCCGCCAATCAGGCTCTTGAACTCTTG TCGTATACGCCCCACGTAACCATAATCACGCAAGGGAAAAAATCGTCCATCACTCCGGAATTCCAGCAACGCCTTAGTGC TGCCGGCATAACCGTTTCAGAACAAAAAATCGAAACCCTTTCCGGCTCTCCGGCACTGTCATCCGTTACCTTGTCGGACG GGACAAGCCTTGAGGCCGAAGGTATTTTCATTGCCATGGGCGAAGCTTCTTCACTTGATTTTGCTTATACTCTGGGGCTG GAACGCAGCGGCGTCTTTCTGGTGGCAGACAAAGAACAAAAAACCAACATTCCCGGAATATACGCTGCAGGCGACTGCAC AGGCGGTTTTTTGCAAATTGCAGTAGCAGTTGGCGAAGGAGCCACTGCTGCACGCTCGGCCATTGCCCACATCAAAGAAA ATTGCAAAGGCTGA
Upstream 100 bases:
>100_bases CCGCCCCCCACGGCTTTTAAATTTTACCCTTGCCAGCCACAGATATGATTCCCATATTAGATAATGTGTTTTTTCCAACC CTCACACGGAGGCTGTGATC
Downstream 100 bases:
>100_bases AAGCAAACAGGCACCATAACATATTGACACCCCTCGTGGCTGGTGATATCTAGCTCAGCTCGTTGGACGCAAAAGGGCCT ATAGCTCAGTTGGCAGAGCC
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MHTPLVIIGSGPAGLSSAIYTCRSGIDTIVFGSKPKVAGDYEIDNYFGFEETISGKELLEKGRAQAERFGARFKEDRVLS VHHNESGGFHIKTEHEEFDACAVILATGVGRVRPGISNLKDYEGKGVSYCVSCDGFFYKNRKVIVVGEGIYAANQALELL SYTPHVTIITQGKKSSITPEFQQRLSAAGITVSEQKIETLSGSPALSSVTLSDGTSLEAEGIFIAMGEASSLDFAYTLGL ERSGVFLVADKEQKTNIPGIYAAGDCTGGFLQIAVAVGEGATAARSAIAHIKENCKG
Sequences:
>Translated_297_residues MHTPLVIIGSGPAGLSSAIYTCRSGIDTIVFGSKPKVAGDYEIDNYFGFEETISGKELLEKGRAQAERFGARFKEDRVLS VHHNESGGFHIKTEHEEFDACAVILATGVGRVRPGISNLKDYEGKGVSYCVSCDGFFYKNRKVIVVGEGIYAANQALELL SYTPHVTIITQGKKSSITPEFQQRLSAAGITVSEQKIETLSGSPALSSVTLSDGTSLEAEGIFIAMGEASSLDFAYTLGL ERSGVFLVADKEQKTNIPGIYAAGDCTGGFLQIAVAVGEGATAARSAIAHIKENCKG >Mature_297_residues MHTPLVIIGSGPAGLSSAIYTCRSGIDTIVFGSKPKVAGDYEIDNYFGFEETISGKELLEKGRAQAERFGARFKEDRVLS VHHNESGGFHIKTEHEEFDACAVILATGVGRVRPGISNLKDYEGKGVSYCVSCDGFFYKNRKVIVVGEGIYAANQALELL SYTPHVTIITQGKKSSITPEFQQRLSAAGITVSEQKIETLSGSPALSSVTLSDGTSLEAEGIFIAMGEASSLDFAYTLGL ERSGVFLVADKEQKTNIPGIYAAGDCTGGFLQIAVAVGEGATAARSAIAHIKENCKG
Specific function: Component of the thioredoxin-thioredoxin reductase system which may be involved in biosynthesis of penicillins and cephalosporins and may be important in determining the thiol- disulfide redox balance [H]
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=306, Percent_Identity=27.4509803921569, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI87081763, Length=289, Percent_Identity=26.643598615917, Blast_Score=88, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6321898, Length=311, Percent_Identity=27.0096463022508, Blast_Score=100, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6320560, Length=317, Percent_Identity=27.1293375394322, Blast_Score=99, Evalue=1e-21,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 31518; Mature: 31518
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTPLVIIGSGPAGLSSAIYTCRSGIDTIVFGSKPKVAGDYEIDNYFGFEETISGKELLE CCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHH KGRAQAERFGARFKEDRVLSVHHNESGGFHIKTEHEEFDACAVILATGVGRVRPGISNLK HHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHH DYEGKGVSYCVSCDGFFYKNRKVIVVGEGIYAANQALELLSYTPHVTIITQGKKSSITPE HCCCCCEEEEEECCCEEEECCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHH FQQRLSAAGITVSEQKIETLSGSPALSSVTLSDGTSLEAEGIFIAMGEASSLDFAYTLGL HHHHHHHCCCEECHHHHHHCCCCCCCEEEEECCCCCEEECEEEEEECCCCCCCEEEEECC ERSGVFLVADKEQKTNIPGIYAAGDCTGGFLQIAVAVGEGATAARSAIAHIKENCKG CCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MHTPLVIIGSGPAGLSSAIYTCRSGIDTIVFGSKPKVAGDYEIDNYFGFEETISGKELLE CCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHH KGRAQAERFGARFKEDRVLSVHHNESGGFHIKTEHEEFDACAVILATGVGRVRPGISNLK HHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHH DYEGKGVSYCVSCDGFFYKNRKVIVVGEGIYAANQALELLSYTPHVTIITQGKKSSITPE HCCCCCEEEEEECCCEEEECCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHH FQQRLSAAGITVSEQKIETLSGSPALSSVTLSDGTSLEAEGIFIAMGEASSLDFAYTLGL HHHHHHHCCCEECHHHHHHCCCCCCCEEEEECCCCCEEECEEEEEECCCCCCCEEEEECC ERSGVFLVADKEQKTNIPGIYAAGDCTGGFLQIAVAVGEGATAARSAIAHIKENCKG CCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8349555; 8423136 [H]