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The map label for this gene is radA [H]

Identifier: 78357153

GI number: 78357153

Start: 2159210

End: 2160568

Strand: Reverse

Name: radA [H]

Synonym: Dde_2110

Alternate gene names: 78357153

Gene position: 2160568-2159210 (Counterclockwise)

Preceding gene: 78357154

Following gene: 78357151

Centisome position: 57.92

GC content: 59.75

Gene sequence:

>1359_bases
GTGGTAAAGCTTAAAGAAACGTATGTCTGCTCGTCGTGCGGGGCCGGTGCCCCGCAGTGGAGAGGACAGTGCCCGCGGTG
CGGCGAATGGAACACCCTGCAGTCTGTGGTGGTGGAAAAGAACCGGCCTGCCGGACGTGCGGGCAGGCATGCCGCTGTGG
CAGCCAGCCGTCCTGTACGGCTTAAAGACGTTACGGAACAGCATCATACACCTTTCGGTACAGGAATAGCCGAGCTGGAT
CGTATTCTGGGCAGGGGACTGGTGCCGGGGGCGGCGCTGCTTGTGGGCGGAGAGCCGGGAATCGGCAAGTCCACCCTGCT
GCTTCAGGTTGCCGGTGCTGTGGCGGCTTCCGGCCGTTCCGTACTGTATCTTTCGGGGGAAGAGTCGCTGGGTCAGCTGC
GCGGAAGGGCAGAGCGGCTCGGTGTTTTATACGACACCATGCTGGCCGTGTCGTCTTCACGGGTTGAAGACGCTTTGCCC
ATGCTGGAAGAGCAGCCGGCACCGGATCTGCTCATTGTTGACTCGGTGCAGACGCTTACCTCGACCCGTGCCGAGGGGTT
GCCGGGCAGTGTCAGTCAGGTGCGGGCAGTTTCTACGGAACTGGCGGAAAAATGCAGGGCCTGCGGCACATGCGTGCTCT
TTGTGGGCCATGTGACCAAAGACGGACAGCTTGCCGGGCCCAAACTGCTGGAGCATATGGTTGATACGGTTATTTCTCTG
GAAGGAGACCGCAGGCAGCAGTTCCGTATGCTGCGGGTGCTTAAGAACCGTTTCGGCCCTAATCAGGAACTTCTTGTTTT
CCGCATGGTGCAGCAGGGGCTGGATCTTGTGGACGACCCTTCAACTTTTTTTCTGGATGCCCGCGACCCTTCTCTCAGCG
GTACTTCCGTGGTCATGACCGTAGATGGTCAGAGACCTTTTGCCGTTGAAATGCAGGCGCTTGTCACCCGCAGCTATCTT
TCCATTCCCAGACGCACAGCGCTGGGGGTCGATGTGAACAGGCTGCACCTGTTGCTTGCCGTGCTGGAAAAACGCCTGCG
CCTCAATTTCGGACAGGTGGACATCTATGCCAAGGTGGGCGGCGGGATGCGTGTGCAGGACCCCGGAATGGACCTTGCGC
TTGTGGCGGCCATTCTGTCTTCCTTTTATGACGTGCCCCTGCCTGCACGCAGCGTCTTCTGGGGCGAGGTTGATCTCAAC
GGTCAGATACGCCCGGTGTCAGCGCAGTCTGTGCGTTCGGTGCAGGCTAAAAGGCTGGGCTATTCATCCATGTTCTGCCC
GGAAGAGGGGGGAACAGGTGTGACCACCATCGGCATGCTGCAGGAAAAACTTTTCCGCAACCCCGCCGCGGATGCCTGA

Upstream 100 bases:

>100_bases
GGTCGCCTTTTACAATCCTCCCCAGACTGTGCGCGAGTTTCTGGTCAAGGTGGTGGAAGCCAAGAATCCCCCTCCTTCCA
ATTAGAGTCAGGCGGCATCT

Downstream 100 bases:

>100_bases
TGCCTCCGCGTTTCTTCTGTTCCAAGATATTCTTGACCTGTCCGGCACGTTGCCGCATCGTATGCTATATATCATGTATC
AGCTGTTTTTTTTGGTACAT

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MVKLKETYVCSSCGAGAPQWRGQCPRCGEWNTLQSVVVEKNRPAGRAGRHAAVAASRPVRLKDVTEQHHTPFGTGIAELD
RILGRGLVPGAALLVGGEPGIGKSTLLLQVAGAVAASGRSVLYLSGEESLGQLRGRAERLGVLYDTMLAVSSSRVEDALP
MLEEQPAPDLLIVDSVQTLTSTRAEGLPGSVSQVRAVSTELAEKCRACGTCVLFVGHVTKDGQLAGPKLLEHMVDTVISL
EGDRRQQFRMLRVLKNRFGPNQELLVFRMVQQGLDLVDDPSTFFLDARDPSLSGTSVVMTVDGQRPFAVEMQALVTRSYL
SIPRRTALGVDVNRLHLLLAVLEKRLRLNFGQVDIYAKVGGGMRVQDPGMDLALVAAILSSFYDVPLPARSVFWGEVDLN
GQIRPVSAQSVRSVQAKRLGYSSMFCPEEGGTGVTTIGMLQEKLFRNPAADA

Sequences:

>Translated_452_residues
MVKLKETYVCSSCGAGAPQWRGQCPRCGEWNTLQSVVVEKNRPAGRAGRHAAVAASRPVRLKDVTEQHHTPFGTGIAELD
RILGRGLVPGAALLVGGEPGIGKSTLLLQVAGAVAASGRSVLYLSGEESLGQLRGRAERLGVLYDTMLAVSSSRVEDALP
MLEEQPAPDLLIVDSVQTLTSTRAEGLPGSVSQVRAVSTELAEKCRACGTCVLFVGHVTKDGQLAGPKLLEHMVDTVISL
EGDRRQQFRMLRVLKNRFGPNQELLVFRMVQQGLDLVDDPSTFFLDARDPSLSGTSVVMTVDGQRPFAVEMQALVTRSYL
SIPRRTALGVDVNRLHLLLAVLEKRLRLNFGQVDIYAKVGGGMRVQDPGMDLALVAAILSSFYDVPLPARSVFWGEVDLN
GQIRPVSAQSVRSVQAKRLGYSSMFCPEEGGTGVTTIGMLQEKLFRNPAADA
>Mature_452_residues
MVKLKETYVCSSCGAGAPQWRGQCPRCGEWNTLQSVVVEKNRPAGRAGRHAAVAASRPVRLKDVTEQHHTPFGTGIAELD
RILGRGLVPGAALLVGGEPGIGKSTLLLQVAGAVAASGRSVLYLSGEESLGQLRGRAERLGVLYDTMLAVSSSRVEDALP
MLEEQPAPDLLIVDSVQTLTSTRAEGLPGSVSQVRAVSTELAEKCRACGTCVLFVGHVTKDGQLAGPKLLEHMVDTVISL
EGDRRQQFRMLRVLKNRFGPNQELLVFRMVQQGLDLVDDPSTFFLDARDPSLSGTSVVMTVDGQRPFAVEMQALVTRSYL
SIPRRTALGVDVNRLHLLLAVLEKRLRLNFGQVDIYAKVGGGMRVQDPGMDLALVAAILSSFYDVPLPARSVFWGEVDLN
GQIRPVSAQSVRSVQAKRLGYSSMFCPEEGGTGVTTIGMLQEKLFRNPAADA

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=427, Percent_Identity=42.6229508196721, Blast_Score=337, Evalue=8e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48701; Mature: 48701

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKLKETYVCSSCGAGAPQWRGQCPRCGEWNTLQSVVVEKNRPAGRAGRHAAVAASRPVR
CCEECCHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCEE
LKDVTEQHHTPFGTGIAELDRILGRGLVPGAALLVGGEPGIGKSTLLLQVAGAVAASGRS
HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCE
VLYLSGEESLGQLRGRAERLGVLYDTMLAVSSSRVEDALPMLEEQPAPDLLIVDSVQTLT
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
STRAEGLPGSVSQVRAVSTELAEKCRACGTCVLFVGHVTKDGQLAGPKLLEHMVDTVISL
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
EGDRRQQFRMLRVLKNRFGPNQELLVFRMVQQGLDLVDDPSTFFLDARDPSLSGTSVVMT
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEE
VDGQRPFAVEMQALVTRSYLSIPRRTALGVDVNRLHLLLAVLEKRLRLNFGQVDIYAKVG
ECCCCCHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECC
GGMRVQDPGMDLALVAAILSSFYDVPLPARSVFWGEVDLNGQIRPVSAQSVRSVQAKRLG
CCEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEECCCHHHHHHHHHHHCC
YSSMFCPEEGGTGVTTIGMLQEKLFRNPAADA
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVKLKETYVCSSCGAGAPQWRGQCPRCGEWNTLQSVVVEKNRPAGRAGRHAAVAASRPVR
CCEECCHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCEE
LKDVTEQHHTPFGTGIAELDRILGRGLVPGAALLVGGEPGIGKSTLLLQVAGAVAASGRS
HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCE
VLYLSGEESLGQLRGRAERLGVLYDTMLAVSSSRVEDALPMLEEQPAPDLLIVDSVQTLT
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
STRAEGLPGSVSQVRAVSTELAEKCRACGTCVLFVGHVTKDGQLAGPKLLEHMVDTVISL
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
EGDRRQQFRMLRVLKNRFGPNQELLVFRMVQQGLDLVDDPSTFFLDARDPSLSGTSVVMT
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEE
VDGQRPFAVEMQALVTRSYLSIPRRTALGVDVNRLHLLLAVLEKRLRLNFGQVDIYAKVG
ECCCCCHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECC
GGMRVQDPGMDLALVAAILSSFYDVPLPARSVFWGEVDLNGQIRPVSAQSVRSVQAKRLG
CCEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEECCCHHHHHHHHHHHCC
YSSMFCPEEGGTGVTTIGMLQEKLFRNPAADA
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8016066 [H]