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The map label for this gene is ycbZ [H]

Identifier: 78357050

GI number: 78357050

Start: 2048540

End: 2051029

Strand: Reverse

Name: ycbZ [H]

Synonym: Dde_2007

Alternate gene names: 78357050

Gene position: 2051029-2048540 (Counterclockwise)

Preceding gene: 304570585

Following gene: 78357049

Centisome position: 54.98

GC content: 51.41

Gene sequence:

>2490_bases
ATGACCAGAAAACAGATTCCCGTTGTCCCCGTCGAGCAGTTGCGCTGGACTCTTGACCCGGAGTCCCTGCCTTTTGATTC
CACCGAGGAGCTGGATGAGCAGCAGCATATTATCGGTCAGCGCCGGGGGGTTGATGCTTTCCGTATGGGAATGGGTATCG
AGGCGAAAGGGTACAATATTTTTGTGACCGGTGCTGCCGGTATCGGCAAGCTGGCAATGGTCAAACGGCTGTTGAAGAAT
CATACAGCGGAAGACCGTACACCTGATGACTTGTGTTATGTGAATAATTTCAGCAATCCGGATGAGCCGGCGCTGCTGCG
CTTTGCCGCGGGAGAAGGACGGCGTTTTAAAGAAGCCGTGCAGCAGTTTTTGGAAGATATCAAACGTGAAGTACCTCAGC
TGTTTGAAAGTCAGGAATATATCAACAGCAAGAATGAAATAATTGAGGCGCATGACAGAAAGACACGTGATTTTTTTAAA
AACCTTGAAGCACGTGTGCGTGATGCGGGATTTGTGCTGGTCAATATGCAGATGGGGCAGGTGCAGCGCCCCGATATCGT
TCCGCTGGTGGACGGAGAGCCGGTTCACCTGATGAAACTTGAGGAAATGGCGGATAAGGGACGTTTTCCTCAGGAAGAGC
TGGAAAGCCTGCAGAAAAAATACAAAGAACTGAAAGAAGAGATAGATGCCATCTTTCTTGAAGTGCGGCACCTGCAGAAA
GAAGTTAAGAAGAAAAGTGAAGAAGTAGACAAGCTTATGTTCGGCAATGCAGCCGCTGAACTTGCCCAGCCCCTGTATGA
ATCGTTTAAAGATGAAAAGGTGATCCGTCATCTTGACGCCATGCTGGCTGATATGGCTGAGAATCTGGATACCATACGAA
TGATAGGTCAGACTCCGCAGGGAATGCCGGGCATGCCTATGATGCCTGTGTCAGCAGAGTCTATCCTTCACCCCTATCAG
GCGAATCTGATAGTGGATAATGCAGAGAAAAAAGGGCGTCCGGTTATTGTGGAGTCGTACCCCACATATCGCAACCTTTT
CGGGGGCATAGACCGGGTGATGGACCGTAGCGGAGTCTGGCGTACCGATTTTACTAAAATCGCTTCCGGTTCGTTCATCA
AAGCCAACGGAGGATATCTTGTTCTCAACTTGATGGACGCGATCATGGAGCCCGGAGTCTGGCAGACCCTCAAACGGGCA
CTGAAAAATGCAGAGACAGAAATCCAGACGTTTGACCCATGGTATTTTGTTACGACTTCGGGGCTGAAGCCTGAGCCTAT
AAAAATGGAAGTGAAAGTCGTGGTGCTGGCCACACCGCAACTATACCACATGCTCCGGAATTACGACCCTGACATGGTAA
AGGTTTTTAAAATCAGAGCTGATTTTGATTCTACCATGGAGCGCAGCAGCGAGGCGGTGAATGAAATCGCCCGCCTTATG
AAAACATTCGGGCGGGCGCAGAACCTGCTTCCGTTCGACCGTTCTGCCGTGGCCCGGCTGATGGAGGAAGGCGTGCGCTA
TGCAGGCAGGCAGGAAAAGATTTCAACCTCGTTTCCTGTGTTGCGCGATGTCATGGAAGAATCGAGCCATATTGCCAGAC
TTGCGGAGTATGCCCGGGTGGAAGCCCGGCATGTGGATGAAGCCATCAAGGCCAGGATAGACCGCGCGAGCCTGATGGAA
GAAAAACTGCAGGAAATGATAGACCGCGGCAGTGTGTTTATTGATACGGATGGCGAAGTTGTGGGGCAGGTGAACGGTTT
GGCTGTGTATTCGCTGGGTGACTACATGTTTGGTAAGCCTTCGCGCATTACTGCCAACACCTCGATGGGGCGTGAAGGTA
TTATCAATATCGAGCGCGAGGCGGATCTTTCGGGTGCCATTCACAATAAAGGCATGCTTATTCTGGCAGGTTATCTGCGG
CAGAACTTTGCGCAGGACAAGCCCCTCAGTCTGGCGGCTTCCATCGCTTTTGAGCAGTCCTACGGCGGTGTGGACGGGGA
CTCCGCCTCGTCCACCGAATTGTATGCTCTGTTTTCAAGCCTCAGTGGTGTGCCCATCCGGCAGGGAATAGCTGTGACAG
GTTCGGTCAATCAACGTGGCGAAGTGCAGCCCATTGGTGGTGTAAATGAAAAAATCGAAGGTTTTTTCGCCTGTTGTGAA
AAGAAAGGTCTGACGGGAACGCAGGGGGTGCTCATACCCAAAGCCAACCTGAAGGACCTTATGCTGCGCGAGCATGTTGT
GCGGGCCGTGGCGGAGGGGAAATTTTCCATATGGGCCGTTGACCATGTTGATCATGGCATTGAGGTTCTTACCGGTATGC
CTGCTGGTAAGCGGAGTAAGTACGGAAAGTTCCCGGCCGGCACGGTGTATCATCTGGTAGAAAAGAAACTGACGGCGCTT
GCCGAGGGGCTGCGTGCTTTTGGAGACAAGAAAAGTGAAACACGCAGGCAGAAACGTAAAAGTTCATCCGCAGACCAGAA
GGATGAATAA

Upstream 100 bases:

>100_bases
ACAACGACGTGGTGCGTATCCGTATGCCGAAATGCAGAAGACCAGAGCCGCGGCGAATTCCTGTAAAGATAAAGAAAACC
GGCGCGTAATGGAGAGTGCA

Downstream 100 bases:

>100_bases
TTTTCTGCCACGGCGGCCTTGTGCGGGGCGCCTGTGAGGTTTCGCGCCATGCTGCGGGACTGAAACTGCATGCCGGCGGT
ATGGCTTTTACCTGTCCATG

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 829; Mature: 828

Protein sequence:

>829_residues
MTRKQIPVVPVEQLRWTLDPESLPFDSTEELDEQQHIIGQRRGVDAFRMGMGIEAKGYNIFVTGAAGIGKLAMVKRLLKN
HTAEDRTPDDLCYVNNFSNPDEPALLRFAAGEGRRFKEAVQQFLEDIKREVPQLFESQEYINSKNEIIEAHDRKTRDFFK
NLEARVRDAGFVLVNMQMGQVQRPDIVPLVDGEPVHLMKLEEMADKGRFPQEELESLQKKYKELKEEIDAIFLEVRHLQK
EVKKKSEEVDKLMFGNAAAELAQPLYESFKDEKVIRHLDAMLADMAENLDTIRMIGQTPQGMPGMPMMPVSAESILHPYQ
ANLIVDNAEKKGRPVIVESYPTYRNLFGGIDRVMDRSGVWRTDFTKIASGSFIKANGGYLVLNLMDAIMEPGVWQTLKRA
LKNAETEIQTFDPWYFVTTSGLKPEPIKMEVKVVVLATPQLYHMLRNYDPDMVKVFKIRADFDSTMERSSEAVNEIARLM
KTFGRAQNLLPFDRSAVARLMEEGVRYAGRQEKISTSFPVLRDVMEESSHIARLAEYARVEARHVDEAIKARIDRASLME
EKLQEMIDRGSVFIDTDGEVVGQVNGLAVYSLGDYMFGKPSRITANTSMGREGIINIEREADLSGAIHNKGMLILAGYLR
QNFAQDKPLSLAASIAFEQSYGGVDGDSASSTELYALFSSLSGVPIRQGIAVTGSVNQRGEVQPIGGVNEKIEGFFACCE
KKGLTGTQGVLIPKANLKDLMLREHVVRAVAEGKFSIWAVDHVDHGIEVLTGMPAGKRSKYGKFPAGTVYHLVEKKLTAL
AEGLRAFGDKKSETRRQKRKSSSADQKDE

Sequences:

>Translated_829_residues
MTRKQIPVVPVEQLRWTLDPESLPFDSTEELDEQQHIIGQRRGVDAFRMGMGIEAKGYNIFVTGAAGIGKLAMVKRLLKN
HTAEDRTPDDLCYVNNFSNPDEPALLRFAAGEGRRFKEAVQQFLEDIKREVPQLFESQEYINSKNEIIEAHDRKTRDFFK
NLEARVRDAGFVLVNMQMGQVQRPDIVPLVDGEPVHLMKLEEMADKGRFPQEELESLQKKYKELKEEIDAIFLEVRHLQK
EVKKKSEEVDKLMFGNAAAELAQPLYESFKDEKVIRHLDAMLADMAENLDTIRMIGQTPQGMPGMPMMPVSAESILHPYQ
ANLIVDNAEKKGRPVIVESYPTYRNLFGGIDRVMDRSGVWRTDFTKIASGSFIKANGGYLVLNLMDAIMEPGVWQTLKRA
LKNAETEIQTFDPWYFVTTSGLKPEPIKMEVKVVVLATPQLYHMLRNYDPDMVKVFKIRADFDSTMERSSEAVNEIARLM
KTFGRAQNLLPFDRSAVARLMEEGVRYAGRQEKISTSFPVLRDVMEESSHIARLAEYARVEARHVDEAIKARIDRASLME
EKLQEMIDRGSVFIDTDGEVVGQVNGLAVYSLGDYMFGKPSRITANTSMGREGIINIEREADLSGAIHNKGMLILAGYLR
QNFAQDKPLSLAASIAFEQSYGGVDGDSASSTELYALFSSLSGVPIRQGIAVTGSVNQRGEVQPIGGVNEKIEGFFACCE
KKGLTGTQGVLIPKANLKDLMLREHVVRAVAEGKFSIWAVDHVDHGIEVLTGMPAGKRSKYGKFPAGTVYHLVEKKLTAL
AEGLRAFGDKKSETRRQKRKSSSADQKDE
>Mature_828_residues
TRKQIPVVPVEQLRWTLDPESLPFDSTEELDEQQHIIGQRRGVDAFRMGMGIEAKGYNIFVTGAAGIGKLAMVKRLLKNH
TAEDRTPDDLCYVNNFSNPDEPALLRFAAGEGRRFKEAVQQFLEDIKREVPQLFESQEYINSKNEIIEAHDRKTRDFFKN
LEARVRDAGFVLVNMQMGQVQRPDIVPLVDGEPVHLMKLEEMADKGRFPQEELESLQKKYKELKEEIDAIFLEVRHLQKE
VKKKSEEVDKLMFGNAAAELAQPLYESFKDEKVIRHLDAMLADMAENLDTIRMIGQTPQGMPGMPMMPVSAESILHPYQA
NLIVDNAEKKGRPVIVESYPTYRNLFGGIDRVMDRSGVWRTDFTKIASGSFIKANGGYLVLNLMDAIMEPGVWQTLKRAL
KNAETEIQTFDPWYFVTTSGLKPEPIKMEVKVVVLATPQLYHMLRNYDPDMVKVFKIRADFDSTMERSSEAVNEIARLMK
TFGRAQNLLPFDRSAVARLMEEGVRYAGRQEKISTSFPVLRDVMEESSHIARLAEYARVEARHVDEAIKARIDRASLMEE
KLQEMIDRGSVFIDTDGEVVGQVNGLAVYSLGDYMFGKPSRITANTSMGREGIINIEREADLSGAIHNKGMLILAGYLRQ
NFAQDKPLSLAASIAFEQSYGGVDGDSASSTELYALFSSLSGVPIRQGIAVTGSVNQRGEVQPIGGVNEKIEGFFACCEK
KGLTGTQGVLIPKANLKDLMLREHVVRAVAEGKFSIWAVDHVDHGIEVLTGMPAGKRSKYGKFPAGTVYHLVEKKLTALA
EGLRAFGDKKSETRRQKRKSSSADQKDE

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=409, Percent_Identity=35.4523227383863, Blast_Score=251, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 93061; Mature: 92930

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKQIPVVPVEQLRWTLDPESLPFDSTEELDEQQHIIGQRRGVDAFRMGMGIEAKGYNI
CCCCCCCCCCHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCEECCCEE
FVTGAAGIGKLAMVKRLLKNHTAEDRTPDDLCYVNNFSNPDEPALLRFAAGEGRRFKEAV
EEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHH
QQFLEDIKREVPQLFESQEYINSKNEIIEAHDRKTRDFFKNLEARVRDAGFVLVNMQMGQ
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCC
VQRPDIVPLVDGEPVHLMKLEEMADKGRFPQEELESLQKKYKELKEEIDAIFLEVRHLQK
CCCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVKKKSEEVDKLMFGNAAAELAQPLYESFKDEKVIRHLDAMLADMAENLDTIRMIGQTPQ
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
GMPGMPMMPVSAESILHPYQANLIVDNAEKKGRPVIVESYPTYRNLFGGIDRVMDRSGVW
CCCCCCCCCCCHHHHCCCHHCCEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCC
RTDFTKIASGSFIKANGGYLVLNLMDAIMEPGVWQTLKRALKNAETEIQTFDPWYFVTTS
CCHHHHHCCCCEEECCCCEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCEECCCEEEEEEC
GLKPEPIKMEVKVVVLATPQLYHMLRNYDPDMVKVFKIRADFDSTMERSSEAVNEIARLM
CCCCCCCEEEEEEEEEECHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
KTFGRAQNLLPFDRSAVARLMEEGVRYAGRQEKISTSFPVLRDVMEESSHIARLAEYARV
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EARHVDEAIKARIDRASLMEEKLQEMIDRGSVFIDTDGEVVGQVNGLAVYSLGDYMFGKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCEEEEEECCHHCCCC
SRITANTSMGREGIINIEREADLSGAIHNKGMLILAGYLRQNFAQDKPLSLAASIAFEQS
CCEEECCCCCCCCCEEEECCCCCCCHHCCCCCEEEEHHHHHHCCCCCCHHHHHHHHHHHH
YGGVDGDSASSTELYALFSSLSGVPIRQGIAVTGSVNQRGEVQPIGGVNEKIEGFFACCE
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
KKGLTGTQGVLIPKANLKDLMLREHVVRAVAEGKFSIWAVDHVDHGIEVLTGMPAGKRSK
HCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCCCCC
YGKFPAGTVYHLVEKKLTALAEGLRAFGDKKSETRRQKRKSSSADQKDE
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TRKQIPVVPVEQLRWTLDPESLPFDSTEELDEQQHIIGQRRGVDAFRMGMGIEAKGYNI
CCCCCCCCCHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCEECCCEE
FVTGAAGIGKLAMVKRLLKNHTAEDRTPDDLCYVNNFSNPDEPALLRFAAGEGRRFKEAV
EEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHH
QQFLEDIKREVPQLFESQEYINSKNEIIEAHDRKTRDFFKNLEARVRDAGFVLVNMQMGQ
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCC
VQRPDIVPLVDGEPVHLMKLEEMADKGRFPQEELESLQKKYKELKEEIDAIFLEVRHLQK
CCCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVKKKSEEVDKLMFGNAAAELAQPLYESFKDEKVIRHLDAMLADMAENLDTIRMIGQTPQ
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
GMPGMPMMPVSAESILHPYQANLIVDNAEKKGRPVIVESYPTYRNLFGGIDRVMDRSGVW
CCCCCCCCCCCHHHHCCCHHCCEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCC
RTDFTKIASGSFIKANGGYLVLNLMDAIMEPGVWQTLKRALKNAETEIQTFDPWYFVTTS
CCHHHHHCCCCEEECCCCEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCEECCCEEEEEEC
GLKPEPIKMEVKVVVLATPQLYHMLRNYDPDMVKVFKIRADFDSTMERSSEAVNEIARLM
CCCCCCCEEEEEEEEEECHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
KTFGRAQNLLPFDRSAVARLMEEGVRYAGRQEKISTSFPVLRDVMEESSHIARLAEYARV
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EARHVDEAIKARIDRASLMEEKLQEMIDRGSVFIDTDGEVVGQVNGLAVYSLGDYMFGKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCEEEEEECCHHCCCC
SRITANTSMGREGIINIEREADLSGAIHNKGMLILAGYLRQNFAQDKPLSLAASIAFEQS
CCEEECCCCCCCCCEEEECCCCCCCHHCCCCCEEEEHHHHHHCCCCCCHHHHHHHHHHHH
YGGVDGDSASSTELYALFSSLSGVPIRQGIAVTGSVNQRGEVQPIGGVNEKIEGFFACCE
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
KKGLTGTQGVLIPKANLKDLMLREHVVRAVAEGKFSIWAVDHVDHGIEVLTGMPAGKRSK
HCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCCCCC
YGKFPAGTVYHLVEKKLTALAEGLRAFGDKKSETRRQKRKSSSADQKDE
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]