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The map label for this gene is yrrC [H]

Identifier: 78356965

GI number: 78356965

Start: 1974891

End: 1976987

Strand: Reverse

Name: yrrC [H]

Synonym: Dde_1922

Alternate gene names: 78356965

Gene position: 1976987-1974891 (Counterclockwise)

Preceding gene: 78356966

Following gene: 78356964

Centisome position: 53.0

GC content: 62.33

Gene sequence:

>2097_bases
TTGTTCGCCCGGGAAAATCAGCCTGTGGTCCTGCTCGGGTCGTGGGCCACCCATCCCAAATACGGCCGTCAGTTCAAGGT
CGACGGGATGGAGCACGACCTCGAACTCGATCCGGAGGGGCTGATCCACTATCTGGCCAACCATCCGGAGATCAAGGGCA
TTGGTCCGGCCAAGGCCAGATTGATCGTCGAGAGTTTCGGCGACGCCTTTGAAGAAACCCTTCTGAATGACCCCGAGCGC
ATCGCGCTCAAAGCTCGGCTGCCCTTGGATGCTGCCCGGCGGCTGCGTGACGAATGGTTGAAGAACCGCAGCGTCAACGC
CGTCATGGCCTGGTTGTCGGCATTCGGACTGACCCATCATCAGGTCACCACTCTGGTCGAAAGACTCGGCGGCAACTGCC
TCGATATTCTGAAGGAAGACCCGTACATCCTCATTCGGGAGATCCGGGGATTCGGCTTCAAGAAGGTCGATAAGATCGCC
CGCAAGCTTGGCACCCCCAAGGACCACACCCCTCGTATCCGCGCTGGGTTGAATTTCTGCGTCCGTGAAGCCCTGGACAA
TGGTCACTGCTGGATCGAATACGAGGATCTGGTGGACCAGGCCAATCTGCTGCTGGTCATGGATGCCCTGGACAGCCGGG
TCCGCATCGAGAGCGCCCTCGACGCGCTCATCGAAGAACAGGCGCTTGCCTGCGATTCCCACGGCGGACGTTTCGTGGTC
GCTCTGCCGGAGATCGTCCGCATGGAGCGGGAGCTGGCCTTGTTGTTCGGCCAGGCCGAAACACCGAATCCTCATTTCCA
GTCCGTCAAGAAACTCGATGCCCTGATTCGGCGCTGCGCATCAACGCTGAACGAGAAGCAGCTCGACGCGGTCCGCTCGG
CCCTCCAGCACAGCATCAGCCTGATTTCGGGTGGAGCCGGTTCGGGCAAGAGCTACACCATTTCGGTCATCAACACCATC
TGCGAGGAGAGCGACCTGGAGGTCGTGCTCGCCGCGCCGACCGGCAAGGCCGCCAAGCGCCTGGAGGAAGTCAGCGGTCG
CAGCGGCACCACCATTCACCGTCTGCTCGGCTATGACGGCAAGGGTTTCTCGCGCAGCAAGGAGAATCCCATCGATGCCG
ACGTCTTGGTGGTCGACGAGTTTTCGATGGTCGACGTGCCGCTGGCCTGGCACCTGTTCGAGGCGGTCGATTTGTCGCGG
ACCACGGTGCTGCTGGTCGGGGACCACAACCAGCTTCCGCCGGTGGGACCCGGAAACATACTGCGCGATCTGATCCAGAC
ACGCGCCATCCCCACGGTCATCCTCGACAAGGTCGTGCGCCAGGCTGGCGTCCTCAAGGAGAACTGCACCGCCGTTCTCA
AGGGCGAGGTGCGCAAGACCAGCGAGGCGTCGGTATCCGGATGCCGGGATTGGTACCTGGTAGATCAGTTCACCGATCCG
ATGGCTGCACGCTCGTTCCTGCTGGAGCTGTTTCAGGAGCGGCTCGACACCCTGGGATTCGACATCATCAAGGACGTGCA
GGTGCTGACGCCGACCCACAAGGGACCGCTCGGCACCAAGGAACTGAACGAGGAACTGCAGCGGCTCATCCAGCGCAAGC
TCTGGAACACCGAGGTGCCGCCGGTCGCCATGGGCCGCCGCGCCCCGTTTCTCAAGCACGACAAGGTCATCCAGACCCGG
AACAACTACGATCTGAACGTGATGAACGGGGCCATCGGCTATGTGGTCGATGTCCTCGCGAACGGCACCCTGGTCATCGA
CTTCGACGGCATGCCGGTGGAGCTGGAGAAGGGTTCGCCCGACCTGCAGGATCTGCAGCTCGCCTATGCGCTCACCATCC
ACAAAACCCAGGGTTCCGAGTTCCCCTGCGCCGTCGTGGTGATCCACAAGGCGCATTCCTTCATGCATCACCGCAACCTG
CTCTACACCGGGGTGACCCGCGCCCGGCGCACCGCCATTGTCCTGGGCGACCATTGGGGCATCCAGAACTGCGCCAAGCG
TTGCCAGGTGGATGACCGCCGGACCTTCCTGCCCCTGTTTCTGGACGCCGCCCAGCACGCGGATGCCGATTCCGCCCGTG
TCGCGGAGGCCGAATGA

Upstream 100 bases:

>100_bases
ACTCCGGGGAAGAATAGAGCGCGTTTACTATGCCGGACCCAAGTTCTCCGCAGGCCGACTGCTCACCCCGACCGGTGAGG
AAGTCCAGTTCGCGGGCAAT

Downstream 100 bases:

>100_bases
GCATGGGCGGAACGGATAACGTCAGGGAGTATTACCGGCTCGTCACCGAGATGGACATCGGTGACGTGGCCCGGGAACTC
CTGCCGGGACGGATCACCCA

Product: ATP-dependent RecD/TraA family DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MFARENQPVVLLGSWATHPKYGRQFKVDGMEHDLELDPEGLIHYLANHPEIKGIGPAKARLIVESFGDAFEETLLNDPER
IALKARLPLDAARRLRDEWLKNRSVNAVMAWLSAFGLTHHQVTTLVERLGGNCLDILKEDPYILIREIRGFGFKKVDKIA
RKLGTPKDHTPRIRAGLNFCVREALDNGHCWIEYEDLVDQANLLLVMDALDSRVRIESALDALIEEQALACDSHGGRFVV
ALPEIVRMERELALLFGQAETPNPHFQSVKKLDALIRRCASTLNEKQLDAVRSALQHSISLISGGAGSGKSYTISVINTI
CEESDLEVVLAAPTGKAAKRLEEVSGRSGTTIHRLLGYDGKGFSRSKENPIDADVLVVDEFSMVDVPLAWHLFEAVDLSR
TTVLLVGDHNQLPPVGPGNILRDLIQTRAIPTVILDKVVRQAGVLKENCTAVLKGEVRKTSEASVSGCRDWYLVDQFTDP
MAARSFLLELFQERLDTLGFDIIKDVQVLTPTHKGPLGTKELNEELQRLIQRKLWNTEVPPVAMGRRAPFLKHDKVIQTR
NNYDLNVMNGAIGYVVDVLANGTLVIDFDGMPVELEKGSPDLQDLQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHHRNL
LYTGVTRARRTAIVLGDHWGIQNCAKRCQVDDRRTFLPLFLDAAQHADADSARVAEAE

Sequences:

>Translated_698_residues
MFARENQPVVLLGSWATHPKYGRQFKVDGMEHDLELDPEGLIHYLANHPEIKGIGPAKARLIVESFGDAFEETLLNDPER
IALKARLPLDAARRLRDEWLKNRSVNAVMAWLSAFGLTHHQVTTLVERLGGNCLDILKEDPYILIREIRGFGFKKVDKIA
RKLGTPKDHTPRIRAGLNFCVREALDNGHCWIEYEDLVDQANLLLVMDALDSRVRIESALDALIEEQALACDSHGGRFVV
ALPEIVRMERELALLFGQAETPNPHFQSVKKLDALIRRCASTLNEKQLDAVRSALQHSISLISGGAGSGKSYTISVINTI
CEESDLEVVLAAPTGKAAKRLEEVSGRSGTTIHRLLGYDGKGFSRSKENPIDADVLVVDEFSMVDVPLAWHLFEAVDLSR
TTVLLVGDHNQLPPVGPGNILRDLIQTRAIPTVILDKVVRQAGVLKENCTAVLKGEVRKTSEASVSGCRDWYLVDQFTDP
MAARSFLLELFQERLDTLGFDIIKDVQVLTPTHKGPLGTKELNEELQRLIQRKLWNTEVPPVAMGRRAPFLKHDKVIQTR
NNYDLNVMNGAIGYVVDVLANGTLVIDFDGMPVELEKGSPDLQDLQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHHRNL
LYTGVTRARRTAIVLGDHWGIQNCAKRCQVDDRRTFLPLFLDAAQHADADSARVAEAE
>Mature_698_residues
MFARENQPVVLLGSWATHPKYGRQFKVDGMEHDLELDPEGLIHYLANHPEIKGIGPAKARLIVESFGDAFEETLLNDPER
IALKARLPLDAARRLRDEWLKNRSVNAVMAWLSAFGLTHHQVTTLVERLGGNCLDILKEDPYILIREIRGFGFKKVDKIA
RKLGTPKDHTPRIRAGLNFCVREALDNGHCWIEYEDLVDQANLLLVMDALDSRVRIESALDALIEEQALACDSHGGRFVV
ALPEIVRMERELALLFGQAETPNPHFQSVKKLDALIRRCASTLNEKQLDAVRSALQHSISLISGGAGSGKSYTISVINTI
CEESDLEVVLAAPTGKAAKRLEEVSGRSGTTIHRLLGYDGKGFSRSKENPIDADVLVVDEFSMVDVPLAWHLFEAVDLSR
TTVLLVGDHNQLPPVGPGNILRDLIQTRAIPTVILDKVVRQAGVLKENCTAVLKGEVRKTSEASVSGCRDWYLVDQFTDP
MAARSFLLELFQERLDTLGFDIIKDVQVLTPTHKGPLGTKELNEELQRLIQRKLWNTEVPPVAMGRRAPFLKHDKVIQTR
NNYDLNVMNGAIGYVVDVLANGTLVIDFDGMPVELEKGSPDLQDLQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHHRNL
LYTGVTRARRTAIVLGDHWGIQNCAKRCQVDDRRTFLPLFLDAAQHADADSARVAEAE

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=459, Percent_Identity=28.5403050108932, Blast_Score=107, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 77722; Mature: 77722

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFARENQPVVLLGSWATHPKYGRQFKVDGMEHDLELDPEGLIHYLANHPEIKGIGPAKAR
CCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
LIVESFGDAFEETLLNDPERIALKARLPLDAARRLRDEWLKNRSVNAVMAWLSAFGLTHH
HHHHHHHHHHHHHHCCCCHHEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH
QVTTLVERLGGNCLDILKEDPYILIREIRGFGFKKVDKIARKLGTPKDHTPRIRAGLNFC
HHHHHHHHHCCCHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
VREALDNGHCWIEYEDLVDQANLLLVMDALDSRVRIESALDALIEEQALACDSHGGRFVV
HHHHHCCCCEEEEEHHHHCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
ALPEIVRMERELALLFGQAETPNPHFQSVKKLDALIRRCASTLNEKQLDAVRSALQHSIS
ECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
LISGGAGSGKSYTISVINTICEESDLEVVLAAPTGKAAKRLEEVSGRSGTTIHRLLGYDG
HHCCCCCCCCCEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHCCCC
KGFSRSKENPIDADVLVVDEFSMVDVPLAWHLFEAVDLSRTTVLLVGDHNQLPPVGPGNI
CCCCCCCCCCCCCEEEEEECCCEECCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
LRDLIQTRAIPTVILDKVVRQAGVLKENCTAVLKGEVRKTSEASVSGCRDWYLVDQFTDP
HHHHHHHHCCHHHHHHHHHHHHCCHHHCCHHHHHCCHHCCCCHHHCCCCCEEEEHHHCCH
MAARSFLLELFQERLDTLGFDIIKDVQVLTPTHKGPLGTKELNEELQRLIQRKLWNTEVP
HHHHHHHHHHHHHHHHHHCHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
PVAMGRRAPFLKHDKVIQTRNNYDLNVMNGAIGYVVDVLANGTLVIDFDGMPVELEKGSP
CCCCCCCCCCCCCCCCEECCCCCCEEEECCHHHHHHHHHCCCEEEEEECCCEEEECCCCC
DLQDLQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHHRNLLYTGVTRARRTAIVLGDHWG
CHHHHHEEEEEEEEECCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCC
IQNCAKRCQVDDRRTFLPLFLDAAQHADADSARVAEAE
HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MFARENQPVVLLGSWATHPKYGRQFKVDGMEHDLELDPEGLIHYLANHPEIKGIGPAKAR
CCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
LIVESFGDAFEETLLNDPERIALKARLPLDAARRLRDEWLKNRSVNAVMAWLSAFGLTHH
HHHHHHHHHHHHHHCCCCHHEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH
QVTTLVERLGGNCLDILKEDPYILIREIRGFGFKKVDKIARKLGTPKDHTPRIRAGLNFC
HHHHHHHHHCCCHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
VREALDNGHCWIEYEDLVDQANLLLVMDALDSRVRIESALDALIEEQALACDSHGGRFVV
HHHHHCCCCEEEEEHHHHCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
ALPEIVRMERELALLFGQAETPNPHFQSVKKLDALIRRCASTLNEKQLDAVRSALQHSIS
ECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
LISGGAGSGKSYTISVINTICEESDLEVVLAAPTGKAAKRLEEVSGRSGTTIHRLLGYDG
HHCCCCCCCCCEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHCCCC
KGFSRSKENPIDADVLVVDEFSMVDVPLAWHLFEAVDLSRTTVLLVGDHNQLPPVGPGNI
CCCCCCCCCCCCCEEEEEECCCEECCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
LRDLIQTRAIPTVILDKVVRQAGVLKENCTAVLKGEVRKTSEASVSGCRDWYLVDQFTDP
HHHHHHHHCCHHHHHHHHHHHHCCHHHCCHHHHHCCHHCCCCHHHCCCCCEEEEHHHCCH
MAARSFLLELFQERLDTLGFDIIKDVQVLTPTHKGPLGTKELNEELQRLIQRKLWNTEVP
HHHHHHHHHHHHHHHHHHCHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
PVAMGRRAPFLKHDKVIQTRNNYDLNVMNGAIGYVVDVLANGTLVIDFDGMPVELEKGSP
CCCCCCCCCCCCCCCCEECCCCCCEEEECCHHHHHHHHHCCCEEEEEECCCEEEECCCCC
DLQDLQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHHRNLLYTGVTRARRTAIVLGDHWG
CHHHHHEEEEEEEEECCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCC
IQNCAKRCQVDDRRTFLPLFLDAAQHADADSARVAEAE
HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]