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The map label for this gene is xerC [H]

Identifier: 78356957

GI number: 78356957

Start: 1965898

End: 1966812

Strand: Direct

Name: xerC [H]

Synonym: Dde_1914

Alternate gene names: 78356957

Gene position: 1965898-1966812 (Clockwise)

Preceding gene: 78356956

Following gene: 78356961

Centisome position: 52.7

GC content: 66.89

Gene sequence:

>915_bases
ATGAGCAACCGAACGGCTGACCTCGACCTGACGGGCGCGACAGAGGCGTTCTGTGCCCGCCTGTCGGCCGAAGGACGCTC
CCCTGCAACCATAGCCGCATACCGCCGAGACCTCGCCCTGGTGGCCCGCGTGGCCGGGGAGCTGGCCCCGGGGATCGTCT
GCAGGGAGGTCACGGTCGGGCTCCTCGACGAGGTGTTTTCCGCCGGGGCGGTCACCGAGAGTGAGCGAGGCCCACGCTCG
GCGGCCTCGCTCCATCGGATGAAGGCGGCGGTGCGGGCCTTTTTCGCCTGGGCCGCCGAGACGGGCGTGGTCGGTGACAA
CCCGGCCCGGTCCATCCGCATGCATCGGCTGCCGAGAAAGCTGCCGGTCTTCCTGACTACCGCCGAAAAGAAACGTCTGC
TCAAGGAGCTCAAGGGGCGGACCGATTTCTCCACGCTGCGCGACCGCGCCATGATCGAGGTGTTGCTGGGCACGGGGATC
AGGCTTGGCGAGCTGACCGCGCTCGACATGGATGACATCGACCTCGACGCCAAGCATCTGCGGGTGCGGGCCAAGGGGAA
TGTGCCGCAGGTCAAGTTCATCAAGACCGACCTCCGCACATTGCTGCGCCGTTACCTGGCCGAGCGTCGTCGACACGGCC
GCCCGGAAATGGAAGCCCTGTTCCTGTCGAACCGGGACGGCAGACTCTGCCAGCGGCAGATAGCCAACCGGCTCGCTCAC
TGGCTGCGGAAGGCCGGGATCGAAAAGGAACTGACGCCGCACGGGCTGCGGCATACCTTCGCCACCCACCTCTACGGCGC
GACAAATGACCTGCTCGTGGTGCAGCGGGCCTTGGGGCACCGGGACGTGTCCACCACCCAGATCTACACCCACCTCGTGG
ACGGTCAGCTCGAGGAAGCCCTCGAACGCCTTTGA

Upstream 100 bases:

>100_bases
CGCATGATGATGGTCTGGGCCAGAGAGTCGGGGCGCATCGAGGAGCTGCCTTTGCCCAAGAGCACGCCCATGGGTCACAG
CCGGGTGAAGGAGTCCAGCG

Downstream 100 bases:

>100_bases
TCCTTCCGGACCCGACGATGGGAGCGGCCTCGGCTGCTCCTGTTTTCGTTGGGCGAGACAGTGTCGAAGACAGTGAATGA
CAGTGCCCGCAGAAGAACAC

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MSNRTADLDLTGATEAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCREVTVGLLDEVFSAGAVTESERGPRS
AASLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFSTLRDRAMIEVLLGTGI
RLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAH
WLRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALERL

Sequences:

>Translated_304_residues
MSNRTADLDLTGATEAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCREVTVGLLDEVFSAGAVTESERGPRS
AASLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFSTLRDRAMIEVLLGTGI
RLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAH
WLRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALERL
>Mature_303_residues
SNRTADLDLTGATEAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCREVTVGLLDEVFSAGAVTESERGPRSA
ASLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFSTLRDRAMIEVLLGTGIR
LGELTALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHW
LRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALERL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerD binding sites by a short central region, forming

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=287, Percent_Identity=35.191637630662, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789261, Length=277, Percent_Identity=35.3790613718412, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33954; Mature: 33823

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRTADLDLTGATEAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCREVTVG
CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLDEVFSAGAVTESERGPRSAASLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRK
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
LPVFLTTAEKKRLLKELKGRTDFSTLRDRAMIEVLLGTGIRLGELTALDMDDIDLDAKHL
CCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEECCEEEECCCCCCCCHHHE
RVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAH
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHHHH
WLRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEA
HHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LERL
HHCC
>Mature Secondary Structure 
SNRTADLDLTGATEAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCREVTVG
CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLDEVFSAGAVTESERGPRSAASLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRK
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
LPVFLTTAEKKRLLKELKGRTDFSTLRDRAMIEVLLGTGIRLGELTALDMDDIDLDAKHL
CCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEECCEEEECCCCCCCCHHHE
RVRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAH
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHHHH
WLRKAGIEKELTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEA
HHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LERL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9675854 [H]