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The map label for this gene is ytrP [H]

Identifier: 78356844

GI number: 78356844

Start: 1850466

End: 1850939

Strand: Reverse

Name: ytrP [H]

Synonym: Dde_1801

Alternate gene names: 78356844

Gene position: 1850939-1850466 (Counterclockwise)

Preceding gene: 78356845

Following gene: 78356843

Centisome position: 49.62

GC content: 57.59

Gene sequence:

>474_bases
GTGGCCGCTTTGGATCTGGATGACTTCAAGGCTGTGAATGATGTCTACGGTCATCCCTGCGGTGATGAGGTGCTTGTCCA
TGTGGCGCACCATCTTGCTTCGGGCAAACGGGCGTATGATGTGGCTGCCAGAACCGGCGGAGAGGAATTTGCTCTCATTC
TACCCGGGGCATCGGCAGTTACCGCGCGGCTGATGGTTGAGCGTCTGCTTGCCGCACTGCGGGCAGCGCCTGTGCGTTGT
GCCGGCACCGGCCCTCTGCATATCACGTTCTCTGCGGGGGTGGCGGTATGCAAAGGCAGCATTCCCTGCAGCGCGGAAAA
GCTGATGGCTTTTGCCGATGAAGCGCTGTACGAGGCCAAACGTGCCGGCAAAAATCGTGTGATGATTTCCCGTAAGTCTC
CCGGTGCTCCCTACGACCGCTCCACCATGGTGCAGTCTCAGGAAAAGCAGATACTTTTTTCAGGAAAAGAATAG

Upstream 100 bases:

>100_bases
GTGAGCAAGTCTTTGGTGTGAAAACCGGAAATATCGACTTTTTCAACGGCCTGTTAAGCTTGAACTGCAGCGTGCGGAAC
GCGGGAATTCGCAGGTAAGC

Downstream 100 bases:

>100_bases
CAGAGCCAGATGGTTATGAGAAAAACACTAAGCGTTTCGATTTTGAGCGGCAAAGGCGGCGTAGGAAAAACCAATCTGGC
TTTGAATCTCGCCTTCTGTC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MAALDLDDFKAVNDVYGHPCGDEVLVHVAHHLASGKRAYDVAARTGGEEFALILPGASAVTARLMVERLLAALRAAPVRC
AGTGPLHITFSAGVAVCKGSIPCSAEKLMAFADEALYEAKRAGKNRVMISRKSPGAPYDRSTMVQSQEKQILFSGKE

Sequences:

>Translated_157_residues
MAALDLDDFKAVNDVYGHPCGDEVLVHVAHHLASGKRAYDVAARTGGEEFALILPGASAVTARLMVERLLAALRAAPVRC
AGTGPLHITFSAGVAVCKGSIPCSAEKLMAFADEALYEAKRAGKNRVMISRKSPGAPYDRSTMVQSQEKQILFSGKE
>Mature_156_residues
AALDLDDFKAVNDVYGHPCGDEVLVHVAHHLASGKRAYDVAARTGGEEFALILPGASAVTARLMVERLLAALRAAPVRCA
GTGPLHITFSAGVAVCKGSIPCSAEKLMAFADEALYEAKRAGKNRVMISRKSPGAPYDRSTMVQSQEKQILFSGKE

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=127, Percent_Identity=44.8818897637795, Blast_Score=105, Evalue=1e-24,
Organism=Escherichia coli, GI145693134, Length=130, Percent_Identity=35.3846153846154, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=128, Percent_Identity=39.84375, Blast_Score=83, Evalue=7e-18,
Organism=Escherichia coli, GI1787802, Length=131, Percent_Identity=37.4045801526718, Blast_Score=83, Evalue=8e-18,
Organism=Escherichia coli, GI1786584, Length=130, Percent_Identity=39.2307692307692, Blast_Score=83, Evalue=8e-18,
Organism=Escherichia coli, GI1787262, Length=131, Percent_Identity=35.1145038167939, Blast_Score=83, Evalue=9e-18,
Organism=Escherichia coli, GI1788381, Length=151, Percent_Identity=33.7748344370861, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=129, Percent_Identity=37.2093023255814, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787541, Length=128, Percent_Identity=35.15625, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=117, Percent_Identity=34.1880341880342, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 16656; Mature: 16525

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALDLDDFKAVNDVYGHPCGDEVLVHVAHHLASGKRAYDVAARTGGEEFALILPGASAV
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCHHH
TARLMVERLLAALRAAPVRCAGTGPLHITFSAGVAVCKGSIPCSAEKLMAFADEALYEAK
HHHHHHHHHHHHHHCCCCEECCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHH
RAGKNRVMISRKSPGAPYDRSTMVQSQEKQILFSGKE
HCCCCEEEEEECCCCCCCCCHHHHHCCCCEEEECCCC
>Mature Secondary Structure 
AALDLDDFKAVNDVYGHPCGDEVLVHVAHHLASGKRAYDVAARTGGEEFALILPGASAV
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCHHH
TARLMVERLLAALRAAPVRCAGTGPLHITFSAGVAVCKGSIPCSAEKLMAFADEALYEAK
HHHHHHHHHHHHHHCCCCEECCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHH
RAGKNRVMISRKSPGAPYDRSTMVQSQEKQILFSGKE
HCCCCEEEEEECCCCCCCCCHHHHHCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]