| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is gpmI [H]
Identifier: 78356800
GI number: 78356800
Start: 1814056
End: 1815597
Strand: Direct
Name: gpmI [H]
Synonym: Dde_1757
Alternate gene names: 78356800
Gene position: 1814056-1815597 (Clockwise)
Preceding gene: 78356799
Following gene: 78356801
Centisome position: 48.63
GC content: 56.87
Gene sequence:
>1542_bases ATGTCATCTTCCGGCCCGCTGAATCCTGTTCTGCTGCTCATTCTTGACGGGTGGGGAATTGCCCCCGCCGGCAAGGGAAA CGCAGTGTCGGCAGCCCGTACTCCCGTGCTGGACAGCCTTATGGCTGCACCGTGCCGCAGCCGCCTGCAATGTTCCGGCA GATCTGTAGGTTTGCCCGACGGATTTATGGGCAATTCCGAAGTGGGGCATATGAATCTTGGTGCCGGAAGAATTGTTTAT CAGGACATGACCCGCATTGATATCGCGGTGGAGGAGCGGCAGCTGTCGGCCCGTCCGGCAATTGCAGACATGTTCGACGC GTTGAAAAGCTCCGGCGGAACACTGCACCTGCTCGGGCTTGTATCCGACGGCGGGGTGCACAGTCACGTCCGTCATCTTT ATGCGCTTGTGGAAGCCGCCCGCGATGCCTGTGTGCCTGTGTGCATCCACGCATTTATGGATGGAAGGGATACCGCTCCT AAAAGCGGCCTGCAGTTCATCAATGACCTTGAAGAGGTACTCGTCAGACTGGGGCACGGCCGTATTGCCAGTGTCACCGG CCGGTACTATGCCATGGACAGAGACCGTCATTGGGAACGTAATGAAACCGCATGGAATGCTCTTGTCCACGGGCAGGGCG AATTTGCGGACAGTGCTGCCCAAGCTGTTGAAAACGCGTATGCTGCAGGCCAGACCGATGAATTCATAAAACCCGTGATT GTCGGCTCTGCCGCCGGCATTGCCGATGGTGACGGTATATTTTTTTACAATTTCCGGGCAGACCGGGCCAGACAGCTCAC CCGCTGCTTTATTGACCCCTCGTTTGATGCTTTTGACAGAGGGCGGGTACCTGTTCTTGCCCGCTTCGCCACCATGACAT CCTACGACGCGTCATTTGATGTGCCGGTGGCTTTTGACAAAGACCCCCTTGAGGGCACTCTGGGTGAAGTTGTCTCTCTG GCCGGTATCAGCCAGTTCAGAATTGCCGAAACAGAAAAATATGCCCATGTGACGTATTTTTTCAACTGCGGACGCGAAGA GCCTTTTACGGGTGAAGACCGTCTGCTTGTTCCCTCGCCCCGCGATGTTGCCACATACGATCTCAAACCCGAAATGAGCG TCTATGAGGTGACGGATTCGCTGCTTGCCGCTCTGGACAAGGGGTACGGTCTCATTGTGTGCAACCTTGCCAATCTTGAC ATGGTGGGACACACCGGAGTGTTTTCCGCCGCTGTAAAAGCCTGCGAGGCCGTTGACGCCTGCACCGGCAGAATTATAGA CGCGTTTGTAGAGAGGGGCGGCGTGGTTATGGTTACCGCCGACCACGGCAACGCTGAGCAGCTGCTGGATGCACAGGGCA ACCCCCATACTGCGCACAGCATGAATCCCGTGCCTGTGGCTCTGCTGGGTGCACCGGCCGCATGGCGCCTTGTGCCGGAA GGCAAACTGGGGGATGTCGCACCGACAATTATTGATATACTGGGGCTGCACCGGCCCGAAGCCATGACCGGACAGAGCCT GCTTGTAAAGGAATCCGTATGA
Upstream 100 bases:
>100_bases ATATCTTTCAGCCCGATTCACGCGAACTGTATAATCTTGAAGGGCTCTGGGCAGACGCTCCGCAGGTGGAGGCCGTCCGG AACCGGACAGGAGAAGAATA
Downstream 100 bases:
>100_bases GTACCAGAACACGTAAGCCTGTGGCTCCAGTAAAGCCTGTGGCGCTTGAGCTGCTGCTTTTTTATCCGTGCCCGTTCTGC GAGCATAAAATTCCCATGCT
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM [H]
Number of amino acids: Translated: 513; Mature: 512
Protein sequence:
>513_residues MSSSGPLNPVLLLILDGWGIAPAGKGNAVSAARTPVLDSLMAAPCRSRLQCSGRSVGLPDGFMGNSEVGHMNLGAGRIVY QDMTRIDIAVEERQLSARPAIADMFDALKSSGGTLHLLGLVSDGGVHSHVRHLYALVEAARDACVPVCIHAFMDGRDTAP KSGLQFINDLEEVLVRLGHGRIASVTGRYYAMDRDRHWERNETAWNALVHGQGEFADSAAQAVENAYAAGQTDEFIKPVI VGSAAGIADGDGIFFYNFRADRARQLTRCFIDPSFDAFDRGRVPVLARFATMTSYDASFDVPVAFDKDPLEGTLGEVVSL AGISQFRIAETEKYAHVTYFFNCGREEPFTGEDRLLVPSPRDVATYDLKPEMSVYEVTDSLLAALDKGYGLIVCNLANLD MVGHTGVFSAAVKACEAVDACTGRIIDAFVERGGVVMVTADHGNAEQLLDAQGNPHTAHSMNPVPVALLGAPAAWRLVPE GKLGDVAPTIIDILGLHRPEAMTGQSLLVKESV
Sequences:
>Translated_513_residues MSSSGPLNPVLLLILDGWGIAPAGKGNAVSAARTPVLDSLMAAPCRSRLQCSGRSVGLPDGFMGNSEVGHMNLGAGRIVY QDMTRIDIAVEERQLSARPAIADMFDALKSSGGTLHLLGLVSDGGVHSHVRHLYALVEAARDACVPVCIHAFMDGRDTAP KSGLQFINDLEEVLVRLGHGRIASVTGRYYAMDRDRHWERNETAWNALVHGQGEFADSAAQAVENAYAAGQTDEFIKPVI VGSAAGIADGDGIFFYNFRADRARQLTRCFIDPSFDAFDRGRVPVLARFATMTSYDASFDVPVAFDKDPLEGTLGEVVSL AGISQFRIAETEKYAHVTYFFNCGREEPFTGEDRLLVPSPRDVATYDLKPEMSVYEVTDSLLAALDKGYGLIVCNLANLD MVGHTGVFSAAVKACEAVDACTGRIIDAFVERGGVVMVTADHGNAEQLLDAQGNPHTAHSMNPVPVALLGAPAAWRLVPE GKLGDVAPTIIDILGLHRPEAMTGQSLLVKESV >Mature_512_residues SSSGPLNPVLLLILDGWGIAPAGKGNAVSAARTPVLDSLMAAPCRSRLQCSGRSVGLPDGFMGNSEVGHMNLGAGRIVYQ DMTRIDIAVEERQLSARPAIADMFDALKSSGGTLHLLGLVSDGGVHSHVRHLYALVEAARDACVPVCIHAFMDGRDTAPK SGLQFINDLEEVLVRLGHGRIASVTGRYYAMDRDRHWERNETAWNALVHGQGEFADSAAQAVENAYAAGQTDEFIKPVIV GSAAGIADGDGIFFYNFRADRARQLTRCFIDPSFDAFDRGRVPVLARFATMTSYDASFDVPVAFDKDPLEGTLGEVVSLA GISQFRIAETEKYAHVTYFFNCGREEPFTGEDRLLVPSPRDVATYDLKPEMSVYEVTDSLLAALDKGYGLIVCNLANLDM VGHTGVFSAAVKACEAVDACTGRIIDAFVERGGVVMVTADHGNAEQLLDAQGNPHTAHSMNPVPVALLGAPAAWRLVPEG KLGDVAPTIIDILGLHRPEAMTGQSLLVKESV
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0696
COG function: function code G; Phosphoglyceromutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BPG-independent phosphoglycerate mutase family [H]
Homologues:
Organism=Escherichia coli, GI1790041, Length=512, Percent_Identity=48.2421875, Blast_Score=480, Evalue=1e-136, Organism=Caenorhabditis elegans, GI32564249, Length=519, Percent_Identity=45.4720616570328, Blast_Score=436, Evalue=1e-122, Organism=Caenorhabditis elegans, GI17507741, Length=519, Percent_Identity=45.4720616570328, Blast_Score=436, Evalue=1e-122,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR011258 - InterPro: IPR006124 - InterPro: IPR005995 [H]
Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 54928; Mature: 54797
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSGPLNPVLLLILDGWGIAPAGKGNAVSAARTPVLDSLMAAPCRSRLQCSGRSVGLPD CCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GFMGNSEVGHMNLGAGRIVYQDMTRIDIAVEERQLSARPAIADMFDALKSSGGTLHLLGL CCCCCCCCCEEECCCCEEEEECHHHEEEEEEHHHHCCCCHHHHHHHHHHCCCCEEEEEEE VSDGGVHSHVRHLYALVEAARDACVPVCIHAFMDGRDTAPKSGLQFINDLEEVLVRLGHG ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC RIASVTGRYYAMDRDRHWERNETAWNALVHGQGEFADSAAQAVENAYAAGQTDEFIKPVI CEEEECCEEEEECCCCCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCEE VGSAAGIADGDGIFFYNFRADRARQLTRCFIDPSFDAFDRGRVPVLARFATMTSYDASFD EECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC VPVAFDKDPLEGTLGEVVSLAGISQFRIAETEKYAHVTYFFNCGREEPFTGEDRLLVPSP CEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCEECCCC RDVATYDLKPEMSVYEVTDSLLAALDKGYGLIVCNLANLDMVGHTGVFSAAVKACEAVDA CCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH CTGRIIDAFVERGGVVMVTADHGNAEQLLDAQGNPHTAHSMNPVPVALLGAPAAWRLVPE HHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEECC GKLGDVAPTIIDILGLHRPEAMTGQSLLVKESV CCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCC >Mature Secondary Structure SSSGPLNPVLLLILDGWGIAPAGKGNAVSAARTPVLDSLMAAPCRSRLQCSGRSVGLPD CCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GFMGNSEVGHMNLGAGRIVYQDMTRIDIAVEERQLSARPAIADMFDALKSSGGTLHLLGL CCCCCCCCCEEECCCCEEEEECHHHEEEEEEHHHHCCCCHHHHHHHHHHCCCCEEEEEEE VSDGGVHSHVRHLYALVEAARDACVPVCIHAFMDGRDTAPKSGLQFINDLEEVLVRLGHG ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC RIASVTGRYYAMDRDRHWERNETAWNALVHGQGEFADSAAQAVENAYAAGQTDEFIKPVI CEEEECCEEEEECCCCCCCCCCHHHHHEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCEE VGSAAGIADGDGIFFYNFRADRARQLTRCFIDPSFDAFDRGRVPVLARFATMTSYDASFD EECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC VPVAFDKDPLEGTLGEVVSLAGISQFRIAETEKYAHVTYFFNCGREEPFTGEDRLLVPSP CEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCEECCCC RDVATYDLKPEMSVYEVTDSLLAALDKGYGLIVCNLANLDMVGHTGVFSAAVKACEAVDA CCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH CTGRIIDAFVERGGVVMVTADHGNAEQLLDAQGNPHTAHSMNPVPVALLGAPAAWRLVPE HHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEECC GKLGDVAPTIIDILGLHRPEAMTGQSLLVKESV CCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA