Click here to switch to the map view.

The map label for this gene is tnpR [H]

Identifier: 78356778

GI number: 78356778

Start: 1792651

End: 1793217

Strand: Reverse

Name: tnpR [H]

Synonym: Dde_1735

Alternate gene names: 78356778

Gene position: 1793217-1792651 (Counterclockwise)

Preceding gene: 78356779

Following gene: 78356777

Centisome position: 48.07

GC content: 51.85

Gene sequence:

>567_bases
ATGGCTCATGTTGGATACATCCGTGTTAGCTCAATCGACCAGAACACTGACCGCCAGCTTGCTGACCTTGATTGCAACTT
GGTGACCGAAGTCTTTGAAGAAAAGGCAAGTGCCGCAACGTCTAAGCGGCCTAAGCTGGAAGAGTGCATGAGGTTTGTCC
GCAAGGGCGATACGCTCCACGTTCATTCAATAGACCGCCTTGCCCGTAACCTTGACGACCTGCTCACGCTCCTAAAGAAG
TTCATAGGCAAGGGCGTCGCCGTTCAGTTCCACAAAGAGGGGTTAACCTTCACAGGCGAAGACAATCCTTTCCAAACGCT
CCAGCTTCAAATCATTGGAGCCGTCGCCCAGTTTGAACGCTCCATCATCAAGGAGCGGCAAAGGGAAGGTATTGCCAAGG
CACAAGCCAAGGGAAAACACTGCGGCAGAAGGGCCAAATTGACGCCAGAACAGGCCGAAGAGCTTCGACATAGGGCAACA
GTCATGGGCGAAGAAAAAAAGGCGTTAGCGGCTGAATATGGCATAAGCAGGCAGACCTTATACCGCGTCATCGCTGAATC
CAATTAA

Upstream 100 bases:

>100_bases
TTCCGTGTCTCAAAACCTCGCAATCTCATTTCTTGACACGTCTTCTCGAAAAGTCTAGTCCTTCTGTTACACAATGAGCA
CAGAAGGAGGAAACAGGAAT

Downstream 100 bases:

>100_bases
CATGCTGAAATATTTAAATAATCAATTAGGTTGCACTAATGAGGGGAGAAGCGGAAACTGCTCCTTTTAAGCATCCTAAT
AACATGTTGAAATTACAGTA

Product: putative resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAHVGYIRVSSIDQNTDRQLADLDCNLVTEVFEEKASAATSKRPKLEECMRFVRKGDTLHVHSIDRLARNLDDLLTLLKK
FIGKGVAVQFHKEGLTFTGEDNPFQTLQLQIIGAVAQFERSIIKERQREGIAKAQAKGKHCGRRAKLTPEQAEELRHRAT
VMGEEKKALAAEYGISRQTLYRVIAESN

Sequences:

>Translated_188_residues
MAHVGYIRVSSIDQNTDRQLADLDCNLVTEVFEEKASAATSKRPKLEECMRFVRKGDTLHVHSIDRLARNLDDLLTLLKK
FIGKGVAVQFHKEGLTFTGEDNPFQTLQLQIIGAVAQFERSIIKERQREGIAKAQAKGKHCGRRAKLTPEQAEELRHRAT
VMGEEKKALAAEYGISRQTLYRVIAESN
>Mature_187_residues
AHVGYIRVSSIDQNTDRQLADLDCNLVTEVFEEKASAATSKRPKLEECMRFVRKGDTLHVHSIDRLARNLDDLLTLLKKF
IGKGVAVQFHKEGLTFTGEDNPFQTLQLQIIGAVAQFERSIIKERQREGIAKAQAKGKHCGRRAKLTPEQAEELRHRATV
MGEEKKALAAEYGISRQTLYRVIAESN

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=179, Percent_Identity=35.195530726257, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787827, Length=187, Percent_Identity=32.620320855615, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1787638, Length=187, Percent_Identity=32.620320855615, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21204; Mature: 21072

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHVGYIRVSSIDQNTDRQLADLDCNLVTEVFEEKASAATSKRPKLEECMRFVRKGDTLH
CCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEE
VHSIDRLARNLDDLLTLLKKFIGKGVAVQFHKEGLTFTGEDNPFQTLQLQIIGAVAQFER
EHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHH
SIIKERQREGIAKAQAKGKHCGRRAKLTPEQAEELRHRATVMGEEKKALAAEYGISRQTL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
YRVIAESN
HHHHHCCC
>Mature Secondary Structure 
AHVGYIRVSSIDQNTDRQLADLDCNLVTEVFEEKASAATSKRPKLEECMRFVRKGDTLH
CCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEE
VHSIDRLARNLDDLLTLLKKFIGKGVAVQFHKEGLTFTGEDNPFQTLQLQIIGAVAQFER
EHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHH
SIIKERQREGIAKAQAKGKHCGRRAKLTPEQAEELRHRATVMGEEKKALAAEYGISRQTL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
YRVIAESN
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6312271 [H]