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The map label for this gene is pomA [H]

Identifier: 78356760

GI number: 78356760

Start: 1775895

End: 1776650

Strand: Reverse

Name: pomA [H]

Synonym: Dde_1717

Alternate gene names: 78356760

Gene position: 1776650-1775895 (Counterclockwise)

Preceding gene: 78356761

Following gene: 78356759

Centisome position: 47.63

GC content: 52.78

Gene sequence:

>756_bases
ATGGATATAGGAACAATTATCGGCATTGTCGGTGCTATCGGGCTCATCATCGGTGCCATCGTGATGGGCAGCGGCCTCGG
CGGATTTATAGACATACCTTCGGTTGCCGTTGTTGTGGGCGGAACTATCGCCGTTGCATTCGTCATGTTCCCTATCAAAA
CGGTGCTCAGTTCCATCAAAGTGGCCATGAAGTGCTTTTTTGCCAAGGCGCCTGATCCTGTCGAATCCATTCAGCAGATC
ATCAGTCTGGCCGAAAAAGCCCGCAAAGAAAGTCTGGTCGCTCTGGAAAAAGTTTCTGTGGACGATCCGTATCTTAAACG
CGGCGTACAACTGGTGGCCGACGGAACGGAAGAATCGCTGGTCAGGTCTGTCATGGAGATAGACATCAGCATTATGAAAC
AGCGTCACAGACGCGGGCAGGAAGTATTTAAAGGGCTCGGAACCTACGCACCGGCCTTCGGCATGATAGGTACGCTTGTC
GGACTGGTACAGATGCTGCAAAACCTCAGCGACCCCGCATCCATCGGCCCTGCCATGGCCGTTGCTCTGCTGACTACGTT
TTACGGTGCGGTACTGGCCAACGTGTTTTTTTTACCCATGGCCAAACGTCTTGAAGAACGCTCCAATGAAGAAGCACATA
ATATGGAGCTGACCATGGAAGGCGTGCTTTCCATACTGAACGGCGATCACCCGAGCATTGTGCGGGAAAAGCTGGAATCA
TTCCTTCCCCCGAGCCAGCGCTCGGCCAAGAAGTAG

Upstream 100 bases:

>100_bases
ACTATCTGGAAGATGTTCGTTTCTGCCTTGAAAATGAAGAAATTGTAATTCACTCACCTGCTGTGGATAAGTAACTTAAC
ACGGAATTAGTGCGAAGATT

Downstream 100 bases:

>100_bases
GAAACGATGGCTGCAGAAGATAAAAAAGCTCCACCGCCACCGAAGCGGCAGGACGATACCCCCTGTGAAGAGGGGCTGCC
GCCGTGGATGGCCACCTTTG

Product: chemotaxis protein PomA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDIGTIIGIVGAIGLIIGAIVMGSGLGGFIDIPSVAVVVGGTIAVAFVMFPIKTVLSSIKVAMKCFFAKAPDPVESIQQI
ISLAEKARKESLVALEKVSVDDPYLKRGVQLVADGTEESLVRSVMEIDISIMKQRHRRGQEVFKGLGTYAPAFGMIGTLV
GLVQMLQNLSDPASIGPAMAVALLTTFYGAVLANVFFLPMAKRLEERSNEEAHNMELTMEGVLSILNGDHPSIVREKLES
FLPPSQRSAKK

Sequences:

>Translated_251_residues
MDIGTIIGIVGAIGLIIGAIVMGSGLGGFIDIPSVAVVVGGTIAVAFVMFPIKTVLSSIKVAMKCFFAKAPDPVESIQQI
ISLAEKARKESLVALEKVSVDDPYLKRGVQLVADGTEESLVRSVMEIDISIMKQRHRRGQEVFKGLGTYAPAFGMIGTLV
GLVQMLQNLSDPASIGPAMAVALLTTFYGAVLANVFFLPMAKRLEERSNEEAHNMELTMEGVLSILNGDHPSIVREKLES
FLPPSQRSAKK
>Mature_251_residues
MDIGTIIGIVGAIGLIIGAIVMGSGLGGFIDIPSVAVVVGGTIAVAFVMFPIKTVLSSIKVAMKCFFAKAPDPVESIQQI
ISLAEKARKESLVALEKVSVDDPYLKRGVQLVADGTEESLVRSVMEIDISIMKQRHRRGQEVFKGLGTYAPAFGMIGTLV
GLVQMLQNLSDPASIGPAMAVALLTTFYGAVLANVFFLPMAKRLEERSNEEAHNMELTMEGVLSILNGDHPSIVREKLES
FLPPSQRSAKK

Specific function: PomA and PomB comprise the stator element of the flagellar motor complex. Required for rotation of the flagellar motor. Probable transmembrane proton channel [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell inner membrane; Multi- pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 26842; Mature: 26842

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCCCCC
>Mature Secondary Structure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HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9260952 [H]