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The map label for this gene is flgD [H]

Identifier: 78356755

GI number: 78356755

Start: 1769299

End: 1770090

Strand: Reverse

Name: flgD [H]

Synonym: Dde_1712

Alternate gene names: 78356755

Gene position: 1770090-1769299 (Counterclockwise)

Preceding gene: 78356756

Following gene: 304570583

Centisome position: 47.45

GC content: 56.44

Gene sequence:

>792_bases
ATGGCTAGCAGTGGTCTCATAGGTCGCGCCGAACAGGAATTTTTCACCAATGATCCTTACGCCAAGCGTAAAGGGGCGGA
TCTGGGCAAGGAAGACTTTCTTACCCTTCTGGTGACCCAGCTTTCGCATCAGGACCCGCTGAACCCCATGGACGACAAGG
AATTTGTAGCCCAGCTGGCCCAGTTCTCCAGCCTTGAACAGCTGACAAACATCAGCGGCGGCATAGACAATCTGAACGAT
GCCTCCAATCAGGGGCAGATGATCAGCGCCGTGGGCTTTATAGGCAAGGAAGTCCGCGCTGCGGGTAACAGTCTTTCGCT
GGAAGACGGCAAGGCCAGCTCTGTGTACTTTGCGCTTAATGCGCCCATCGTCGAAGGCTATGTGAATATTTATGATTCTG
AAATGAACCTTGTGCGTACCGAAGCACTGGGTGCAAAGCAGGCCGGTGAATACGAATATGTCTGGGACGGCGAGGACTAC
AGCGGCAAAGGCATGGCCGACGGTCCTTACTACATTACCATGGCAGCTGCCGCGGCCGACGGCACACCGGTAATGGTCTA
CACCGAAGTGAGCGGCAAGGTGGCCGGCGTACAGCGCGACGGCAACGATTCGTGGCTCCGCCTTGATGACGGCCGTTTTG
TCAAATTCACCGAAGTCCGTGAGGTTGTTAACACAAGCACAGTGGACAACGGCAACGCAAATGACGGTGACGACGGCACA
GGCGGTGACGGCACCGACACAGGTTCCGGCGACGGTGAAGGCGACGCAGGTACGGACGCCCAGAACGGATAA

Upstream 100 bases:

>100_bases
GCGAAGGCTCAGCTTTGGCCCAGGAAATGCAAAGTCCTGCCCATAAGGCAAGAATTACCACCTCGTCTGTGGATATCATA
GCATAATAAAGGGTTCAGTC

Downstream 100 bases:

>100_bases
TGCAAAAAAGAAAGGGATAGCGGCTCAGGCCAGCGGCCCGGGCTTTTCGCCATACGCGAATATATCAGGAGGTCAAAATG
AGTCTTACAGCTTCCATGTG

Product: basal-body rod modification protein FlgD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MASSGLIGRAEQEFFTNDPYAKRKGADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGGIDNLND
ASNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFALNAPIVEGYVNIYDSEMNLVRTEALGAKQAGEYEYVWDGEDY
SGKGMADGPYYITMAAAAADGTPVMVYTEVSGKVAGVQRDGNDSWLRLDDGRFVKFTEVREVVNTSTVDNGNANDGDDGT
GGDGTDTGSGDGEGDAGTDAQNG

Sequences:

>Translated_263_residues
MASSGLIGRAEQEFFTNDPYAKRKGADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGGIDNLND
ASNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFALNAPIVEGYVNIYDSEMNLVRTEALGAKQAGEYEYVWDGEDY
SGKGMADGPYYITMAAAAADGTPVMVYTEVSGKVAGVQRDGNDSWLRLDDGRFVKFTEVREVVNTSTVDNGNANDGDDGT
GGDGTDTGSGDGEGDAGTDAQNG
>Mature_262_residues
ASSGLIGRAEQEFFTNDPYAKRKGADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGGIDNLNDA
SNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFALNAPIVEGYVNIYDSEMNLVRTEALGAKQAGEYEYVWDGEDYS
GKGMADGPYYITMAAAAADGTPVMVYTEVSGKVAGVQRDGNDSWLRLDDGRFVKFTEVREVVNTSTVDNGNANDGDDGTG
GDGTDTGSGDGEGDAGTDAQNG

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=212, Percent_Identity=31.1320754716981, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 27808; Mature: 27677

Theoretical pI: Translated: 3.87; Mature: 3.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSGLIGRAEQEFFTNDPYAKRKGADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLA
CCCCCCCCCCHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
QFSSLEQLTNISGGIDNLNDASNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFALN
HHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC
APIVEGYVNIYDSEMNLVRTEALGAKQAGEYEYVWDGEDYSGKGMADGPYYITMAAAAAD
CCCEEHHHHEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCC
GTPVMVYTEVSGKVAGVQRDGNDSWLRLDDGRFVKFTEVREVVNTSTVDNGNANDGDDGT
CCEEEEEEECCCEEEEEEECCCCCEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC
GGDGTDTGSGDGEGDAGTDAQNG
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASSGLIGRAEQEFFTNDPYAKRKGADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLA
CCCCCCCCCHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
QFSSLEQLTNISGGIDNLNDASNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFALN
HHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEC
APIVEGYVNIYDSEMNLVRTEALGAKQAGEYEYVWDGEDYSGKGMADGPYYITMAAAAAD
CCCEEHHHHEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCC
GTPVMVYTEVSGKVAGVQRDGNDSWLRLDDGRFVKFTEVREVVNTSTVDNGNANDGDDGT
CCEEEEEEECCCEEEEEEECCCCCEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC
GGDGTDTGSGDGEGDAGTDAQNG
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]