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The map label for this gene is cph2 [H]

Identifier: 78356671

GI number: 78356671

Start: 1677566

End: 1679866

Strand: Reverse

Name: cph2 [H]

Synonym: Dde_1628

Alternate gene names: 78356671

Gene position: 1679866-1677566 (Counterclockwise)

Preceding gene: 78356673

Following gene: 78356669

Centisome position: 45.03

GC content: 57.84

Gene sequence:

>2301_bases
ATGGCAAGGCAAGAAACGCTGCCGCTCTTAACAACCGGCCGGGCTGACGGGGACACAGCTCCCGACTCGGCTGTCCGGCC
TCTGCTGAAGGGCGGAGTCCCGCTGCATATCATCCTGCTCATACTGCCCGAACACAGCCTCATGGGTAAACTGTACGGTC
AGGAGATGGCGGACAACATCATCACCATGGCCGCAACCGCCATGCACAAAGCCCCTGCTCTGAAGGGCGCAAAACCTGTC
CTGTTTTCTCCGTCAGCGGGCGAACTATGCGCCGCATTTCCCGCTGAAAACGCACAGCGCGGCAATCTTGCCGACACGGC
GTACACCATCCGACTTATGGTCCAGAACAGCATCGAGCCCGAGGCTGTCCGCTGGACAGGCAGAAGCATACAGATAAACG
CAGGATGCGCAGTCTGTCAGCCGGCGGCAGACAGCGTCCGGCAGGCCCGCGGATTCATGAGTGCCCTGGCCGAAGCGCGG
CAGCTGGCGCAACAGGGTATGAACGCCGGTCAGTTGCATATGGCAGGCGAATTGCGCAGCATACTTGCCCGCAAATCACT
GCGGACGCTTTATCAACCCATCATCAACCTGAGCACAGGCGAAACAGCCGCATGGGAGGCTCTTACCCGGGGGCCGGAGG
GCACCGTTTTCGAGTCTCCTCTCATTCTGTTCGACATGGCCGAAGAACTGGGACAGCTTTTCGCCATTGAGCGCCTGTGC
CGCGAAAGCGCTGTACGCGGCGCAGGCACGCTGGGACCGGAACAACTGCTGTTCCTCAACGTGCATCCCCGCACGCTTAC
AGACCCGGCTTTTTCCACTGGCAATACCCGTAAAATGCTGGAAGCTGCGGGGCTGAGCCCGCAAAACGTGGTTCTGGAAA
TAACGGAGCGCCACAGCATCAGAAACTTCACCCTGTTTTACAAGACACTGGCCCACTATAGGGGCCAAGGCTATAAAATA
GCCATTGACGATGCGGGAACAGGGTATTCCGGACTTTCTTCCATTGCCGAAATAACACCCGATTTCATCAAGGTGGACAT
GTCGCTGATACGGGGCATCAACAGAGACCCTGTCCGGCGGGCTCTGATGGAGACCATGATTTCGCTGGCAGATAAAATAG
GCTCGCGGGTTATTGCCGAAGGCATTGAAACCCGCGAGGAAGCCATGACTCTGGCGGAAACAGGTGCGCATTTCGGACAG
GGGTTTTATTTCGGCAGACCGTGCGCCAGCCGCAGGACAATCACAATCAGCCCTGAAAAGCTGCGTATACAGCCTTTCAG
CACGGTATTGCACCCTGTGGGCTGCTCTGTACCCACCGGCAGTCTTGCTCTGCCGGTCACCAGCGTAACGGGCAACACCA
GAGTAAGTACCGTACGCGAGCTTTTTGAACAGCACCATCCGATGACCAGCATAGCCGTGGTCGATGACGGGCGGCCGGTG
GGGCTTGTCATGGACTATCATCTGAACCGTCAGTTGTCGGCACAGTATGGTGTGGCCCTGTATTTCAAGCGGCCCGTGTC
GTCGGTTATGGACCATACCCCGCTTGTGGTTGATGAAAACGAGCCGGTGGAATGCACAGCCCAGAGAGCCATGGCGCGGG
GAAAGCTGCAGGCGTACGATGATGTTCTTGTCACCCGCGCAGGCAGACTCACCGGAGCTGTATCAGTGCAGAGCCTGCTC
AACACGCTGGCAAAAGTGCAGGTGGAACTGGCAAAAGGGTCAAACCCGCTCTCCGGTCTGCCCGGCAATGTGGCACTGGA
AAGAGAAATGGAGCGTCGGCTGCATTCCGGTCAGCGCTTTGCGCTTATCTATGCCGATCTGGACAACTTCAAAAGCTACA
ATGACAGCTACGGATTTAAAAACGGCGACAGGGTCATTCTGCTGCTGGCGCGTCTGCTTTCATGGGCTGTAAGGCGGCAC
GGCACAGACAGCGATTTTACCGCGCATATCGGCGGCGACGACTTTGTGTGCGCCGTGCATGCAGACAGGGCGGAAAGAAT
ATGTCAGGCAGTGGTACGCTGCTTCAAACGTCTGGTGCGCTCGTGCTACTGCGAAAAAGATCTGGCAAAAGGCTGGATAC
GCGCACGGGGCCGTGACGGGGTGGAAAGACAGTACAGCCTTGTTTCTGTATCGCTGGCAGTCATTGAATGTCACGGCAGC
GTCTCGCTGCAGGAAATCGGAGAACGTGCGGCGCAGATAAAACACTTTGCCAAAACGCTGGAGGGCAATGTCTATGTGAC
CGACCGGCGGGCGCCGCTGGGCAGCGGCAAGGCAACGGCATGCACCTGCCAACCGGCATAG

Upstream 100 bases:

>100_bases
CATCGCTTTGCAATTGTCACACAGCTGGCACGGTCTCCGGCGTTCCTGAACGTATAACATCCCAGCTTTACAACACAGCC
TGTCAGCCAAGGGGGGATCC

Downstream 100 bases:

>100_bases
ACAAACATGTGCCGCCGGTGCATGTGACGGTCGTGCAACACCGGCACCATCTCTGCCGCGCAGAACCGACTGCCTGCCGG
AGGCTGACGGCAGCGTACCT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 766; Mature: 765

Protein sequence:

>766_residues
MARQETLPLLTTGRADGDTAPDSAVRPLLKGGVPLHIILLILPEHSLMGKLYGQEMADNIITMAATAMHKAPALKGAKPV
LFSPSAGELCAAFPAENAQRGNLADTAYTIRLMVQNSIEPEAVRWTGRSIQINAGCAVCQPAADSVRQARGFMSALAEAR
QLAQQGMNAGQLHMAGELRSILARKSLRTLYQPIINLSTGETAAWEALTRGPEGTVFESPLILFDMAEELGQLFAIERLC
RESAVRGAGTLGPEQLLFLNVHPRTLTDPAFSTGNTRKMLEAAGLSPQNVVLEITERHSIRNFTLFYKTLAHYRGQGYKI
AIDDAGTGYSGLSSIAEITPDFIKVDMSLIRGINRDPVRRALMETMISLADKIGSRVIAEGIETREEAMTLAETGAHFGQ
GFYFGRPCASRRTITISPEKLRIQPFSTVLHPVGCSVPTGSLALPVTSVTGNTRVSTVRELFEQHHPMTSIAVVDDGRPV
GLVMDYHLNRQLSAQYGVALYFKRPVSSVMDHTPLVVDENEPVECTAQRAMARGKLQAYDDVLVTRAGRLTGAVSVQSLL
NTLAKVQVELAKGSNPLSGLPGNVALEREMERRLHSGQRFALIYADLDNFKSYNDSYGFKNGDRVILLLARLLSWAVRRH
GTDSDFTAHIGGDDFVCAVHADRAERICQAVVRCFKRLVRSCYCEKDLAKGWIRARGRDGVERQYSLVSVSLAVIECHGS
VSLQEIGERAAQIKHFAKTLEGNVYVTDRRAPLGSGKATACTCQPA

Sequences:

>Translated_766_residues
MARQETLPLLTTGRADGDTAPDSAVRPLLKGGVPLHIILLILPEHSLMGKLYGQEMADNIITMAATAMHKAPALKGAKPV
LFSPSAGELCAAFPAENAQRGNLADTAYTIRLMVQNSIEPEAVRWTGRSIQINAGCAVCQPAADSVRQARGFMSALAEAR
QLAQQGMNAGQLHMAGELRSILARKSLRTLYQPIINLSTGETAAWEALTRGPEGTVFESPLILFDMAEELGQLFAIERLC
RESAVRGAGTLGPEQLLFLNVHPRTLTDPAFSTGNTRKMLEAAGLSPQNVVLEITERHSIRNFTLFYKTLAHYRGQGYKI
AIDDAGTGYSGLSSIAEITPDFIKVDMSLIRGINRDPVRRALMETMISLADKIGSRVIAEGIETREEAMTLAETGAHFGQ
GFYFGRPCASRRTITISPEKLRIQPFSTVLHPVGCSVPTGSLALPVTSVTGNTRVSTVRELFEQHHPMTSIAVVDDGRPV
GLVMDYHLNRQLSAQYGVALYFKRPVSSVMDHTPLVVDENEPVECTAQRAMARGKLQAYDDVLVTRAGRLTGAVSVQSLL
NTLAKVQVELAKGSNPLSGLPGNVALEREMERRLHSGQRFALIYADLDNFKSYNDSYGFKNGDRVILLLARLLSWAVRRH
GTDSDFTAHIGGDDFVCAVHADRAERICQAVVRCFKRLVRSCYCEKDLAKGWIRARGRDGVERQYSLVSVSLAVIECHGS
VSLQEIGERAAQIKHFAKTLEGNVYVTDRRAPLGSGKATACTCQPA
>Mature_765_residues
ARQETLPLLTTGRADGDTAPDSAVRPLLKGGVPLHIILLILPEHSLMGKLYGQEMADNIITMAATAMHKAPALKGAKPVL
FSPSAGELCAAFPAENAQRGNLADTAYTIRLMVQNSIEPEAVRWTGRSIQINAGCAVCQPAADSVRQARGFMSALAEARQ
LAQQGMNAGQLHMAGELRSILARKSLRTLYQPIINLSTGETAAWEALTRGPEGTVFESPLILFDMAEELGQLFAIERLCR
ESAVRGAGTLGPEQLLFLNVHPRTLTDPAFSTGNTRKMLEAAGLSPQNVVLEITERHSIRNFTLFYKTLAHYRGQGYKIA
IDDAGTGYSGLSSIAEITPDFIKVDMSLIRGINRDPVRRALMETMISLADKIGSRVIAEGIETREEAMTLAETGAHFGQG
FYFGRPCASRRTITISPEKLRIQPFSTVLHPVGCSVPTGSLALPVTSVTGNTRVSTVRELFEQHHPMTSIAVVDDGRPVG
LVMDYHLNRQLSAQYGVALYFKRPVSSVMDHTPLVVDENEPVECTAQRAMARGKLQAYDDVLVTRAGRLTGAVSVQSLLN
TLAKVQVELAKGSNPLSGLPGNVALEREMERRLHSGQRFALIYADLDNFKSYNDSYGFKNGDRVILLLARLLSWAVRRHG
TDSDFTAHIGGDDFVCAVHADRAERICQAVVRCFKRLVRSCYCEKDLAKGWIRARGRDGVERQYSLVSVSLAVIECHGSV
SLQEIGERAAQIKHFAKTLEGNVYVTDRRAPLGSGKATACTCQPA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081845, Length=255, Percent_Identity=28.6274509803922, Blast_Score=103, Evalue=6e-23,
Organism=Escherichia coli, GI1787541, Length=241, Percent_Identity=30.7053941908714, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=27.8481012658228, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=27.4678111587983, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI1788502, Length=236, Percent_Identity=28.3898305084746, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081921, Length=255, Percent_Identity=28.2352941176471, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787055, Length=249, Percent_Identity=31.7269076305221, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081980, Length=270, Percent_Identity=27.037037037037, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI87082096, Length=312, Percent_Identity=25.3205128205128, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI226510982, Length=256, Percent_Identity=27.34375, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787410, Length=217, Percent_Identity=24.8847926267281, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=25.4166666666667, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788849, Length=303, Percent_Identity=22.7722772277228, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 83451; Mature: 83320

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQETLPLLTTGRADGDTAPDSAVRPLLKGGVPLHIILLILPEHSLMGKLYGQEMADNI
CCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
ITMAATAMHKAPALKGAKPVLFSPSAGELCAAFPAENAQRGNLADTAYTIRLMVQNSIEP
HHHHHHHHHHCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCHHEEEEEEEECCCCC
EAVRWTGRSIQINAGCAVCQPAADSVRQARGFMSALAEARQLAQQGMNAGQLHMAGELRS
CCEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
ILARKSLRTLYQPIINLSTGETAAWEALTRGPEGTVFESPLILFDMAEELGQLFAIERLC
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHH
RESAVRGAGTLGPEQLLFLNVHPRTLTDPAFSTGNTRKMLEAAGLSPQNVVLEITERHSI
HHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCC
RNFTLFYKTLAHYRGQGYKIAIDDAGTGYSGLSSIAEITPDFIKVDMSLIRGINRDPVRR
HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHH
ALMETMISLADKIGSRVIAEGIETREEAMTLAETGAHFGQGFYFGRPCASRRTITISPEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCEECCCCCCCCEEEECCCC
LRIQPFSTVLHPVGCSVPTGSLALPVTSVTGNTRVSTVRELFEQHHPMTSIAVVDDGRPV
EEECHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCE
GLVMDYHLNRQLSAQYGVALYFKRPVSSVMDHTPLVVDENEPVECTAQRAMARGKLQAYD
EEEEEECCCCCCCCCCCEEEEECCHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCHHHHH
DVLVTRAGRLTGAVSVQSLLNTLAKVQVELAKGSNPLSGLPGNVALEREMERRLHSGQRF
HHHHHHCCCHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCCCCEEHHHHHHHHHCCCCEE
ALIYADLDNFKSYNDSYGFKNGDRVILLLARLLSWAVRRHGTDSDFTAHIGGDDFVCAVH
EEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEE
ADRAERICQAVVRCFKRLVRSCYCEKDLAKGWIRARGRDGVERQYSLVSVSLAVIECHGS
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHEEEEEEEEECCC
VSLQEIGERAAQIKHFAKTLEGNVYVTDRRAPLGSGKATACTCQPA
CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCC
>Mature Secondary Structure 
ARQETLPLLTTGRADGDTAPDSAVRPLLKGGVPLHIILLILPEHSLMGKLYGQEMADNI
CCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
ITMAATAMHKAPALKGAKPVLFSPSAGELCAAFPAENAQRGNLADTAYTIRLMVQNSIEP
HHHHHHHHHHCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCHHEEEEEEEECCCCC
EAVRWTGRSIQINAGCAVCQPAADSVRQARGFMSALAEARQLAQQGMNAGQLHMAGELRS
CCEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
ILARKSLRTLYQPIINLSTGETAAWEALTRGPEGTVFESPLILFDMAEELGQLFAIERLC
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHH
RESAVRGAGTLGPEQLLFLNVHPRTLTDPAFSTGNTRKMLEAAGLSPQNVVLEITERHSI
HHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCC
RNFTLFYKTLAHYRGQGYKIAIDDAGTGYSGLSSIAEITPDFIKVDMSLIRGINRDPVRR
HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHH
ALMETMISLADKIGSRVIAEGIETREEAMTLAETGAHFGQGFYFGRPCASRRTITISPEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCEECCCCCCCCEEEECCCC
LRIQPFSTVLHPVGCSVPTGSLALPVTSVTGNTRVSTVRELFEQHHPMTSIAVVDDGRPV
EEECHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCE
GLVMDYHLNRQLSAQYGVALYFKRPVSSVMDHTPLVVDENEPVECTAQRAMARGKLQAYD
EEEEEECCCCCCCCCCCEEEEECCHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCHHHHH
DVLVTRAGRLTGAVSVQSLLNTLAKVQVELAKGSNPLSGLPGNVALEREMERRLHSGQRF
HHHHHHCCCHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCCCCEEHHHHHHHHHCCCCEE
ALIYADLDNFKSYNDSYGFKNGDRVILLLARLLSWAVRRHGTDSDFTAHIGGDDFVCAVH
EEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEE
ADRAERICQAVVRCFKRLVRSCYCEKDLAKGWIRARGRDGVERQYSLVSVSLAVIECHGS
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHEEEEEEEEECCC
VSLQEIGERAAQIKHFAKTLEGNVYVTDRRAPLGSGKATACTCQPA
CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]