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The map label for this gene is ybgF [H]

Identifier: 78356623

GI number: 78356623

Start: 1605314

End: 1606105

Strand: Direct

Name: ybgF [H]

Synonym: Dde_1580

Alternate gene names: 78356623

Gene position: 1605314-1606105 (Clockwise)

Preceding gene: 78356621

Following gene: 78356624

Centisome position: 43.04

GC content: 56.19

Gene sequence:

>792_bases
ATGAACGTTCGGCAGAGTATGGCATTGGCATTATGTGTGGTGGCAGCGACGGTACTGGCTGGCTGTGCTCCGCGCGGCGG
AGATACCGTTGCCGCCAGCAGTGAATGGCGGCTGCAGAATCTGGAAGCGAATCAGCTTGAAATGCAGGAAAAAGACCGCG
CTGCCGGTGCCGAAATGCGCAGCAGGCTTCAGGCGCTGGAAAACAGACTGGAACGTCTGGAAAAGAAGCTGGAAGATACC
GGCAGCATGAATGCCGCTGCACAGGCGGATGCTGAAGCCCGTAAAGCCGCGGAGAATGCGAAGCAGTACGCCTCAACGGC
ACCTGCACCTGCGCCTGCTCCTGTTGCCGCGCCGCAGCAGAGTCCGGTACAGGCCGCAGGGCATGCAGCCTCTGCAAAGA
AGGCCCCTGCTTCACAGCCGGCTGATGAGACGGCTCGCTATCAGGCCGGTGTAAAAGCGGTGATGAATGAAGATGTGAAG
ACCGGCCGCAGCATTCTGGAAGCTTTTCTGGCTGATTTTCCCAAAAGCGGCCTTGCCCCCAACGCGTCCTACTGGCTTGG
TGAAACCTATTACCACGAAAAGCGTTACGCCGAAGCCATTCTTACCTTTAAAGAGGTGGTACGCAATTATCCCAAGCACG
AGAAAGCCGCCGCAGCCATGTTGAAAACAGGCTATGCGTACGAAATGCTGGGCGATAAAAGCAATGCCCGTTTTTATCTG
CAGACCCTTGTGGATGAATATTCCGCTTCAGAACCTGCTGCCCTTGCGCGCAAGCGTTTGAAATCGCTGTAA

Upstream 100 bases:

>100_bases
CGTTCGTCCTGCAAGGGTTGTCTTGATTAATAGCCGCATGTCGCCTATTTAAAGCAGATGCATTGCAAGTACAGATTCAC
GGGTATCCGGAGGCGCTAGA

Downstream 100 bases:

>100_bases
CAACAGGGGTTGCTTTCCGTGTCTTCTTCCTGCCGCAGAGGCTCTTCATGTGCGGGTGCACAGATGGAAACGATATCTGA
ACACCCCGACGCATACACGC

Product: TPR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNVRQSMALALCVVAATVLAGCAPRGGDTVAASSEWRLQNLEANQLEMQEKDRAAGAEMRSRLQALENRLERLEKKLEDT
GSMNAAAQADAEARKAAENAKQYASTAPAPAPAPVAAPQQSPVQAAGHAASAKKAPASQPADETARYQAGVKAVMNEDVK
TGRSILEAFLADFPKSGLAPNASYWLGETYYHEKRYAEAILTFKEVVRNYPKHEKAAAAMLKTGYAYEMLGDKSNARFYL
QTLVDEYSASEPAALARKRLKSL

Sequences:

>Translated_263_residues
MNVRQSMALALCVVAATVLAGCAPRGGDTVAASSEWRLQNLEANQLEMQEKDRAAGAEMRSRLQALENRLERLEKKLEDT
GSMNAAAQADAEARKAAENAKQYASTAPAPAPAPVAAPQQSPVQAAGHAASAKKAPASQPADETARYQAGVKAVMNEDVK
TGRSILEAFLADFPKSGLAPNASYWLGETYYHEKRYAEAILTFKEVVRNYPKHEKAAAAMLKTGYAYEMLGDKSNARFYL
QTLVDEYSASEPAALARKRLKSL
>Mature_263_residues
MNVRQSMALALCVVAATVLAGCAPRGGDTVAASSEWRLQNLEANQLEMQEKDRAAGAEMRSRLQALENRLERLEKKLEDT
GSMNAAAQADAEARKAAENAKQYASTAPAPAPAPVAAPQQSPVQAAGHAASAKKAPASQPADETARYQAGVKAVMNEDVK
TGRSILEAFLADFPKSGLAPNASYWLGETYYHEKRYAEAILTFKEVVRNYPKHEKAAAAMLKTGYAYEMLGDKSNARFYL
QTLVDEYSASEPAALARKRLKSL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=98, Percent_Identity=36.734693877551, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28380; Mature: 28380

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVRQSMALALCVVAATVLAGCAPRGGDTVAASSEWRLQNLEANQLEMQEKDRAAGAEMR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
SRLQALENRLERLEKKLEDTGSMNAAAQADAEARKAAENAKQYASTAPAPAPAPVAAPQQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SPVQAAGHAASAKKAPASQPADETARYQAGVKAVMNEDVKTGRSILEAFLADFPKSGLAP
CCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NASYWLGETYYHEKRYAEAILTFKEVVRNYPKHEKAAAAMLKTGYAYEMLGDKSNARFYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHH
QTLVDEYSASEPAALARKRLKSL
HHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNVRQSMALALCVVAATVLAGCAPRGGDTVAASSEWRLQNLEANQLEMQEKDRAAGAEMR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
SRLQALENRLERLEKKLEDTGSMNAAAQADAEARKAAENAKQYASTAPAPAPAPVAAPQQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SPVQAAGHAASAKKAPASQPADETARYQAGVKAVMNEDVKTGRSILEAFLADFPKSGLAP
CCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NASYWLGETYYHEKRYAEAILTFKEVVRNYPKHEKAAAAMLKTGYAYEMLGDKSNARFYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHH
QTLVDEYSASEPAALARKRLKSL
HHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]