| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is typA [H]
Identifier: 78356576
GI number: 78356576
Start: 1551395
End: 1553239
Strand: Reverse
Name: typA [H]
Synonym: Dde_1533
Alternate gene names: 78356576
Gene position: 1553239-1551395 (Counterclockwise)
Preceding gene: 78356577
Following gene: 78356575
Centisome position: 41.64
GC content: 56.37
Gene sequence:
>1845_bases GTGACCACAATCGTAAACGAAAAGCTGCGTAACGTAGCTATCATTGCCCACGTTGACCACGGTAAAACAACCATGGTCGA CGCCATGTTCCGTCAGGCCGGACTGTTCCGCTCCGATCAGGAAGTTCAGGATCGCATAATGGACAGCATGGATCTTGAAC GTGAACGCGGCATTACCATTGCAGCCAAAAACTGCGCCGTGAACTGGAAGGGCACAAAGATCAACATAATCGACACCCCC GGTCACGCCGACTTCGGCGGCGAGGTGGAGCGGTCTCTTTCCATGGCCACAGGTGCCATCCTGCTGGTCGATGCTTCTGA AGGCCCCCTGCCCCAGACCCGCTTTGTGCTCAAAAAAACGCTGGAGGCGGGACTCAAGGTCATCGTGGTCATTAACAAGA TCGACCGTAAAGACGCCCGCGTGGAAGAAGTGCTCAACGAAGTGTACGACCTGTTCATCGATCTTGACGCCAGCGAAGAG CAGATAGAATTTCCGGTGCTGTACGCCATCGGCCGGGACGGCGTGGCCATGCGCGACCCGCAGGATCCGCGGCAGGATCT CACCCCGCTTTTTGAAACCATCCTCGAGGTCATTCCCGGCCCGGCGCACAATCCCGAAGAACCCTTCCAGATGCTTGTTT CCGACCTTGCCTACTCCGACTATCTGGGCAGACTGGCTGTGGGCCGCATCATACACGGAACGGCTCAGGCCAAAGAAGAA ATGCTCTGCGTGGGTGAAAAGGAAAACCAGACCCTGCGTGCCACCAAGCTGCAGGTGTACGACGGGCTTTCGCTCAGCGA AGTGCAGTCTGCCGAAGCCGGCGACATTCTGGTGCTGGCCGGTATTGAAGACGTGACCATAGGCGACACCATCTGCACCA AAGCCGCCCCCCGCAAGCTCAAGCGTATTCACGTGGACGAGCCGACGGTGGCCATGCGTTTTTCCATCAACAGCTCGCCC CTTGCCGGCCGCGAAGGAAAAATTGTCCAGTCCCGTAAAATCGGCGAGCGGCTCTTCAAGGAAATGCTGCGCAACGTGGC CATCCGCGTGGAAGAAACCGACGACAAGGACAGCTACCTTGTGAAAGGCCGCGGCGAATTCCAGATGGCCATACTCATCG AAACCATGCGCCGTGAAGGATTTGAACTCAATGTGGGCCGTCCGGAAGTTATCTTCAAAAAAGACGGCAACACACTGGTG GAACCCATCGAACGCCTGTGGGTGGACTGCGACGAACCCTTTATGGGAGTTGTCACTGAAAAACTTTCCACCCGTAAAGG CCGCATGGTCAACCTGATCAACAACGGCACCGGCCGTGTGCGTATGGAATTCAGCATTCCTTCGCGCGGGCTCATCGGCT ACCGTGATGAATTTCTCACGGACACCAAGGGTACCGGCATCATGAACTCGTATCTTGACGGATACGAACCGCACCGCGGC GATTTTCCCACCCGCTATACCGGTTCCATTGTGGCCGACCGTGCGGGCACCACTGTTGCCTACGGTCTGTACAACCTGGA ACCGCGCGGCCGTCTTTTTGTGGGTGCGGGCGAACCGTGCTATGAAGGCATGGTTGTGGGTGAACACAACCGCGATAACG ACATCGATGTGAACCCCACCAAAGAAAAGAAACTGACCAACATGCGTGCTTCCGGCAAAGATGAAAACGTGGTGCTTACT CCCGTCAAACCCATGACGCTGGAACAGGCACTGCACTTTGTGCGTGATGACGAACTGGTCGAAGTCACCCCCGTATCCAT CAGAATCCGCAAGGCGGAACTCTCGGCACAAAAGCGGCACGCCGCTCAGGGGGCCAAGAAAAAAGCCTCGTTGCTGAAAA AATAA
Upstream 100 bases:
>100_bases ACCAATTTTCCGCCTCTCCGATTCTGCCGCAATCCGGAAACGATATGCGCCAGCCATCGAAAGGCGTTTCTTTTTTTGCT TACCTGCCAAGGATATAACA
Downstream 100 bases:
>100_bases CCGGCCAAAAAACACGGCGCGGCGGATGCATATCCTGCCGCGCCGTTTTTTTGGCTCTGGCCGTCAGTTCCGGCAATATA TTCTTATAAAAATAACATCT
Product: GTP-binding protein TypA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 614; Mature: 613
Protein sequence:
>614_residues MTTIVNEKLRNVAIIAHVDHGKTTMVDAMFRQAGLFRSDQEVQDRIMDSMDLERERGITIAAKNCAVNWKGTKINIIDTP GHADFGGEVERSLSMATGAILLVDASEGPLPQTRFVLKKTLEAGLKVIVVINKIDRKDARVEEVLNEVYDLFIDLDASEE QIEFPVLYAIGRDGVAMRDPQDPRQDLTPLFETILEVIPGPAHNPEEPFQMLVSDLAYSDYLGRLAVGRIIHGTAQAKEE MLCVGEKENQTLRATKLQVYDGLSLSEVQSAEAGDILVLAGIEDVTIGDTICTKAAPRKLKRIHVDEPTVAMRFSINSSP LAGREGKIVQSRKIGERLFKEMLRNVAIRVEETDDKDSYLVKGRGEFQMAILIETMRREGFELNVGRPEVIFKKDGNTLV EPIERLWVDCDEPFMGVVTEKLSTRKGRMVNLINNGTGRVRMEFSIPSRGLIGYRDEFLTDTKGTGIMNSYLDGYEPHRG DFPTRYTGSIVADRAGTTVAYGLYNLEPRGRLFVGAGEPCYEGMVVGEHNRDNDIDVNPTKEKKLTNMRASGKDENVVLT PVKPMTLEQALHFVRDDELVEVTPVSIRIRKAELSAQKRHAAQGAKKKASLLKK
Sequences:
>Translated_614_residues MTTIVNEKLRNVAIIAHVDHGKTTMVDAMFRQAGLFRSDQEVQDRIMDSMDLERERGITIAAKNCAVNWKGTKINIIDTP GHADFGGEVERSLSMATGAILLVDASEGPLPQTRFVLKKTLEAGLKVIVVINKIDRKDARVEEVLNEVYDLFIDLDASEE QIEFPVLYAIGRDGVAMRDPQDPRQDLTPLFETILEVIPGPAHNPEEPFQMLVSDLAYSDYLGRLAVGRIIHGTAQAKEE MLCVGEKENQTLRATKLQVYDGLSLSEVQSAEAGDILVLAGIEDVTIGDTICTKAAPRKLKRIHVDEPTVAMRFSINSSP LAGREGKIVQSRKIGERLFKEMLRNVAIRVEETDDKDSYLVKGRGEFQMAILIETMRREGFELNVGRPEVIFKKDGNTLV EPIERLWVDCDEPFMGVVTEKLSTRKGRMVNLINNGTGRVRMEFSIPSRGLIGYRDEFLTDTKGTGIMNSYLDGYEPHRG DFPTRYTGSIVADRAGTTVAYGLYNLEPRGRLFVGAGEPCYEGMVVGEHNRDNDIDVNPTKEKKLTNMRASGKDENVVLT PVKPMTLEQALHFVRDDELVEVTPVSIRIRKAELSAQKRHAAQGAKKKASLLKK >Mature_613_residues TTIVNEKLRNVAIIAHVDHGKTTMVDAMFRQAGLFRSDQEVQDRIMDSMDLERERGITIAAKNCAVNWKGTKINIIDTPG HADFGGEVERSLSMATGAILLVDASEGPLPQTRFVLKKTLEAGLKVIVVINKIDRKDARVEEVLNEVYDLFIDLDASEEQ IEFPVLYAIGRDGVAMRDPQDPRQDLTPLFETILEVIPGPAHNPEEPFQMLVSDLAYSDYLGRLAVGRIIHGTAQAKEEM LCVGEKENQTLRATKLQVYDGLSLSEVQSAEAGDILVLAGIEDVTIGDTICTKAAPRKLKRIHVDEPTVAMRFSINSSPL AGREGKIVQSRKIGERLFKEMLRNVAIRVEETDDKDSYLVKGRGEFQMAILIETMRREGFELNVGRPEVIFKKDGNTLVE PIERLWVDCDEPFMGVVTEKLSTRKGRMVNLINNGTGRVRMEFSIPSRGLIGYRDEFLTDTKGTGIMNSYLDGYEPHRGD FPTRYTGSIVADRAGTTVAYGLYNLEPRGRLFVGAGEPCYEGMVVGEHNRDNDIDVNPTKEKKLTNMRASGKDENVVLTP VKPMTLEQALHFVRDDELVEVTPVSIRIRKAELSAQKRHAAQGAKKKASLLKK
Specific function: Not known; probably interacts with the ribosomes in a GTP dependent manner [H]
COG id: COG1217
COG function: function code T; Predicted membrane GTPase involved in stress response
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. TypA subfamily [H]
Homologues:
Organism=Homo sapiens, GI157426893, Length=305, Percent_Identity=33.1147540983607, Blast_Score=139, Evalue=1e-32, Organism=Homo sapiens, GI18390331, Length=150, Percent_Identity=40.6666666666667, Blast_Score=111, Evalue=3e-24, Organism=Homo sapiens, GI94966754, Length=146, Percent_Identity=37.6712328767123, Blast_Score=109, Evalue=8e-24, Organism=Homo sapiens, GI25306283, Length=171, Percent_Identity=36.2573099415205, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI19923640, Length=171, Percent_Identity=36.2573099415205, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI25306287, Length=144, Percent_Identity=40.9722222222222, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI34147630, Length=275, Percent_Identity=29.4545454545455, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI4503483, Length=160, Percent_Identity=33.125, Blast_Score=96, Evalue=8e-20, Organism=Homo sapiens, GI217272892, Length=139, Percent_Identity=37.410071942446, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI217272894, Length=139, Percent_Identity=37.410071942446, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI310132016, Length=111, Percent_Identity=37.8378378378378, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI310110807, Length=111, Percent_Identity=37.8378378378378, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI310123363, Length=111, Percent_Identity=37.8378378378378, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI223555963, Length=330, Percent_Identity=24.5454545454545, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI5729864, Length=330, Percent_Identity=24.5454545454545, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI94966752, Length=77, Percent_Identity=41.5584415584416, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI48994988, Length=603, Percent_Identity=50.2487562189055, Blast_Score=607, Evalue=1e-175, Organism=Escherichia coli, GI1788922, Length=498, Percent_Identity=27.1084337349398, Blast_Score=142, Evalue=7e-35, Organism=Escherichia coli, GI1789738, Length=150, Percent_Identity=38, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1789737, Length=279, Percent_Identity=28.3154121863799, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1790412, Length=284, Percent_Identity=28.8732394366197, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1790835, Length=147, Percent_Identity=30.6122448979592, Blast_Score=78, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17557151, Length=299, Percent_Identity=26.0869565217391, Blast_Score=130, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17533571, Length=138, Percent_Identity=44.2028985507246, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17556745, Length=143, Percent_Identity=40.5594405594406, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71988819, Length=143, Percent_Identity=38.4615384615385, Blast_Score=108, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71988811, Length=143, Percent_Identity=38.4615384615385, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17506493, Length=172, Percent_Identity=29.6511627906977, Blast_Score=92, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17552882, Length=134, Percent_Identity=34.3283582089552, Blast_Score=90, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17556456, Length=284, Percent_Identity=29.9295774647887, Blast_Score=83, Evalue=4e-16, Organism=Caenorhabditis elegans, GI25141371, Length=278, Percent_Identity=26.6187050359712, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17552884, Length=265, Percent_Identity=26.7924528301887, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569207, Length=265, Percent_Identity=26.7924528301887, Blast_Score=67, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323320, Length=292, Percent_Identity=32.8767123287671, Blast_Score=153, Evalue=1e-37, Organism=Saccharomyces cerevisiae, GI6322359, Length=214, Percent_Identity=34.1121495327103, Blast_Score=105, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6324707, Length=160, Percent_Identity=35, Blast_Score=102, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6320593, Length=160, Percent_Identity=35, Blast_Score=102, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6323098, Length=138, Percent_Identity=42.0289855072464, Blast_Score=100, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6324761, Length=268, Percent_Identity=29.4776119402985, Blast_Score=97, Evalue=8e-21, Organism=Saccharomyces cerevisiae, GI6324166, Length=155, Percent_Identity=33.5483870967742, Blast_Score=82, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6324550, Length=145, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI78706572, Length=294, Percent_Identity=29.9319727891156, Blast_Score=125, Evalue=8e-29, Organism=Drosophila melanogaster, GI24582462, Length=147, Percent_Identity=40.8163265306122, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI221458488, Length=163, Percent_Identity=36.1963190184049, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI28574573, Length=139, Percent_Identity=38.1294964028777, Blast_Score=100, Evalue=6e-21, Organism=Drosophila melanogaster, GI21357743, Length=134, Percent_Identity=39.5522388059701, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI24585709, Length=164, Percent_Identity=32.9268292682927, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI24585711, Length=164, Percent_Identity=32.9268292682927, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI24585713, Length=164, Percent_Identity=32.9268292682927, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI19921738, Length=298, Percent_Identity=30.8724832214765, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI281363316, Length=299, Percent_Identity=25.4180602006689, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI17864358, Length=299, Percent_Identity=25.4180602006689, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI28572034, Length=147, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - InterPro: IPR006298 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: NA
Molecular weight: Translated: 68441; Mature: 68310
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTIVNEKLRNVAIIAHVDHGKTTMVDAMFRQAGLFRSDQEVQDRIMDSMDLERERGITI CCCCHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCCCEE AAKNCAVNWKGTKINIIDTPGHADFGGEVERSLSMATGAILLVDASEGPLPQTRFVLKKT EECCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHH LEAGLKVIVVINKIDRKDARVEEVLNEVYDLFIDLDASEEQIEFPVLYAIGRDGVAMRDP HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCCCCC QDPRQDLTPLFETILEVIPGPAHNPEEPFQMLVSDLAYSDYLGRLAVGRIIHGTAQAKEE CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH MLCVGEKENQTLRATKLQVYDGLSLSEVQSAEAGDILVLAGIEDVTIGDTICTKAAPRKL EEEECCCCCCEEEEEEEEEECCCCHHHHCCCCCCCEEEEECCCCEECCCHHHCCCCHHHH KRIHVDEPTVAMRFSINSSPLAGREGKIVQSRKIGERLFKEMLRNVAIRVEETDDKDSYL HEEECCCCCEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHEEEEECCCCCCCEE VKGRGEFQMAILIETMRREGFELNVGRPEVIFKKDGNTLVEPIERLWVDCDEPFMGVVTE EECCCCEEEEHHHHHHHHCCCEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHH KLSTRKGRMVNLINNGTGRVRMEFSIPSRGLIGYRDEFLTDTKGTGIMNSYLDGYEPHRG HHHCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCCHHHHHCCCCCCCC DFPTRYTGSIVADRAGTTVAYGLYNLEPRGRLFVGAGEPCYEGMVVGEHNRDNDIDVNPT CCCCCCCCCEEECCCCCEEEEEEEEECCCCEEEEECCCHHHCCEEEECCCCCCCCCCCCC KEKKLTNMRASGKDENVVLTPVKPMTLEQALHFVRDDELVEVTPVSIRIRKAELSAQKRH HHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEECEEEEEEEHHHHHHHHH AAQGAKKKASLLKK HHHCHHHHHHHHCC >Mature Secondary Structure TTIVNEKLRNVAIIAHVDHGKTTMVDAMFRQAGLFRSDQEVQDRIMDSMDLERERGITI CCCHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCCCEE AAKNCAVNWKGTKINIIDTPGHADFGGEVERSLSMATGAILLVDASEGPLPQTRFVLKKT EECCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHH LEAGLKVIVVINKIDRKDARVEEVLNEVYDLFIDLDASEEQIEFPVLYAIGRDGVAMRDP HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCCCCC QDPRQDLTPLFETILEVIPGPAHNPEEPFQMLVSDLAYSDYLGRLAVGRIIHGTAQAKEE CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH MLCVGEKENQTLRATKLQVYDGLSLSEVQSAEAGDILVLAGIEDVTIGDTICTKAAPRKL EEEECCCCCCEEEEEEEEEECCCCHHHHCCCCCCCEEEEECCCCEECCCHHHCCCCHHHH KRIHVDEPTVAMRFSINSSPLAGREGKIVQSRKIGERLFKEMLRNVAIRVEETDDKDSYL HEEECCCCCEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHEEEEECCCCCCCEE VKGRGEFQMAILIETMRREGFELNVGRPEVIFKKDGNTLVEPIERLWVDCDEPFMGVVTE EECCCCEEEEHHHHHHHHCCCEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHH KLSTRKGRMVNLINNGTGRVRMEFSIPSRGLIGYRDEFLTDTKGTGIMNSYLDGYEPHRG HHHCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCCHHHHHCCCCCCCC DFPTRYTGSIVADRAGTTVAYGLYNLEPRGRLFVGAGEPCYEGMVVGEHNRDNDIDVNPT CCCCCCCCCEEECCCCCEEEEEEEEECCCCEEEEECCCHHHCCEEEECCCCCCCCCCCCC KEKKLTNMRASGKDENVVLTPVKPMTLEQALHFVRDDELVEVTPVSIRIRKAELSAQKRH HHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEECEEEEEEEHHHHHHHHH AAQGAKKKASLLKK HHHCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]