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The map label for this gene is yjdF [H]

Identifier: 78356548

GI number: 78356548

Start: 1523034

End: 1523645

Strand: Direct

Name: yjdF [H]

Synonym: Dde_1503

Alternate gene names: 78356548

Gene position: 1523034-1523645 (Clockwise)

Preceding gene: 78356547

Following gene: 78356549

Centisome position: 40.83

GC content: 56.37

Gene sequence:

>612_bases
ATGCGCATCAATGTTACCCGCGAGAATTTTCCGGTGGTGCTTGCTGCCGTGTTTACTGTTTTTTTTGCACTGCTGGGCAT
TGCGCCCGCTTCCCGCGCGGTGTGGATTGCAGAGGTCATTCCGCTTGTCAGCGTGTTTGTGCTGCTGGTGGTCACATACA
GATTTTTCCGTTTTTCCAATATTGCTTACGGGCTTATGGCTGTGTGGCTTTTCTGGCATACGGTGGGGGCGCATTTCACC
TTCAGCGAGGTGCCTTTCGGTGCGGTAACGGAACTGCTGGGAGGCGGACGCAATCACTTTGACCGCATCGGGCATTTCAG
TGTCGGGTTTTATGCCTATGCCATGTGCGAGCTTTTTATGCGCCGCAGACTGGCCGGTCCGGTGGTGTCCACCTTGTTTG
CCCTCTTTTTCATCATGTCCGTGGCGGCCGGATACGAAATTATCGAATGGTGGTATGCCGCGGCGGAAGGTGGTGATGCC
GGGGTTGCTTTTCTGGGTAGTCAGGGCGACGTGTGGGACGCGCAGAAAGACATGCTGGCCGACACGCTGGGGGCTGTTTT
TTCGTTGCTGCTGTTCTGGACCATGGGCAGACGATGGGGCAGCCGGCCCTGA

Upstream 100 bases:

>100_bases
GCCGAAAGGCTTTCCGGCCTTTTGCATGCGCAACGGTTTGCACACTCCGCCTGTTTGCGGCATTGTGCTGCAAGCCGTTT
TTTCGCTCAGGAGGAGCCTT

Downstream 100 bases:

>100_bases
CGGCAGCGCCGCAGGCTGTCCGCTGCCGTTGCCGTGTATGCGCCGCGGCGGTGCGGCGGGGGTGTACTTGAGTGCGGAAA
TGCCGTATGGAGTCGTTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MRINVTRENFPVVLAAVFTVFFALLGIAPASRAVWIAEVIPLVSVFVLLVVTYRFFRFSNIAYGLMAVWLFWHTVGAHFT
FSEVPFGAVTELLGGGRNHFDRIGHFSVGFYAYAMCELFMRRRLAGPVVSTLFALFFIMSVAAGYEIIEWWYAAAEGGDA
GVAFLGSQGDVWDAQKDMLADTLGAVFSLLLFWTMGRRWGSRP

Sequences:

>Translated_203_residues
MRINVTRENFPVVLAAVFTVFFALLGIAPASRAVWIAEVIPLVSVFVLLVVTYRFFRFSNIAYGLMAVWLFWHTVGAHFT
FSEVPFGAVTELLGGGRNHFDRIGHFSVGFYAYAMCELFMRRRLAGPVVSTLFALFFIMSVAAGYEIIEWWYAAAEGGDA
GVAFLGSQGDVWDAQKDMLADTLGAVFSLLLFWTMGRRWGSRP
>Mature_203_residues
MRINVTRENFPVVLAAVFTVFFALLGIAPASRAVWIAEVIPLVSVFVLLVVTYRFFRFSNIAYGLMAVWLFWHTVGAHFT
FSEVPFGAVTELLGGGRNHFDRIGHFSVGFYAYAMCELFMRRRLAGPVVSTLFALFFIMSVAAGYEIIEWWYAAAEGGDA
GVAFLGSQGDVWDAQKDMLADTLGAVFSLLLFWTMGRRWGSRP

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=192, Percent_Identity=33.8541666666667, Blast_Score=100, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 22676; Mature: 22676

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRINVTRENFPVVLAAVFTVFFALLGIAPASRAVWIAEVIPLVSVFVLLVVTYRFFRFSN
CEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAYGLMAVWLFWHTVGAHFTFSEVPFGAVTELLGGGRNHFDRIGHFSVGFYAYAMCELFM
HHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH
RRRLAGPVVSTLFALFFIMSVAAGYEIIEWWYAAAEGGDAGVAFLGSQGDVWDAQKDMLA
HHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH
DTLGAVFSLLLFWTMGRRWGSRP
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRINVTRENFPVVLAAVFTVFFALLGIAPASRAVWIAEVIPLVSVFVLLVVTYRFFRFSN
CEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAYGLMAVWLFWHTVGAHFTFSEVPFGAVTELLGGGRNHFDRIGHFSVGFYAYAMCELFM
HHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH
RRRLAGPVVSTLFALFFIMSVAAGYEIIEWWYAAAEGGDAGVAFLGSQGDVWDAQKDMLA
HHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH
DTLGAVFSLLLFWTMGRRWGSRP
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]