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The map label for this gene is ctpA [H]

Identifier: 78356482

GI number: 78356482

Start: 1461343

End: 1462632

Strand: Direct

Name: ctpA [H]

Synonym: Dde_1437

Alternate gene names: 78356482

Gene position: 1461343-1462632 (Clockwise)

Preceding gene: 78356481

Following gene: 78356483

Centisome position: 39.18

GC content: 56.67

Gene sequence:

>1290_bases
ATGCGTTTGTCCCTGTGGACAGCCACGTTTATTGTTTTTCTGACGCTGACCGTGTCCATCGGGCCGGGCAATGCCACGGA
CGGTCCCGGCCGGTTTGAGTCGCTCAAGCGTTTCAGTCAGGTGCTTGACCTTGTCGAACGCTTTTATGTGAGCGATGTTT
CACGCGACGAACTGATGGAAGGTGCCATCAGGGGCATGTTGCAGAACCTCGATCCCCATTCTGCGTTTCTGGATGCCGCG
GAATACCGTGAAATGCAGGAGAGCACTTCCGGCGAGTTTTTCGGTATCGGTATCGAGATAACCCAGCAGAACGACAGGCT
TGTTGTTGTGGCACCCATTGCCGATACTCCCGCAGCCCGTGCCGGACTGCGGGCCGGTGATATCATTCTGGCCGTGGACG
GCAAGCTGACGCAGGAAATGACTCTGCGCGAATCTGTCAGCAGGATTCGCGGCCCCAGAGGCAGCACCGTCAAACTGACC
ATTCTGCACGAAGGCGAAAATTCGCCCGAGACTGTCAGCATAGAGCGTGATTCCATTCCGCTTATCAGTGTGAAGTCTCA
TGAACTTGAGCCGGGCTACCTGTGGGTGCGTCTCAGCCGCTTCAGCGAGCGGACCACCAACGAACTGCATGACGCCATAC
GCGAAGAACGTAAGCGCGGTCCCATAAAAGGCCTTATCCTTGACCTGCGCAACAATCCGGGCGGGCTTCTTGATCAGGCC
GTGCATGTGGCCGATACGTTCCTTTCCGAAGGTACCATCGTCTCCATAAAAGGCCGTATCGAATCCAACAACAGGGATTT
TAAAGCCACTGCGCAGGCCACTGATGTAAAAGCTCCGCTGGTTGTGCTGGTGAACGCCGGATCCGCTTCTGCTTCTGAAA
TCGTTGCCGGTGCCCTGCGCGACCACAAGCGCGGGCTGCTGCTGGGCGAGAGGACGTTCGGCAAGGGCTCGGTGCAGAAC
GTCATTCCCCTTGCAGACGGTTCCGGTCTTAAACTGACCATTGCCCTGTACCATACGCCTGACGGCACTTCCATTCAGGC
GGAAGGGGTCGAACCCGATATCAAGCTGCCTTTTGTCCAGCCTGCCAGAGAAGAAGAAAGCAAGGCAAAGCATCCTTTCG
GCATCATGCGTGAAAAGGACCTTGCACGACATCTTGAAAACGGCGAGGACAAAAAGAGCCCCGAAACCGAGCGGGACAAG
GAATCCGTAGCAAGCCTTGAGCGCGACAACCAGCTGCGCATGGCTTTGCAGCTGGTCAAACAGCTGCCGCGCCTGCAGGC
TATCCACTAG

Upstream 100 bases:

>100_bases
GATTGTATTTCGAATTGCGTTTTCATCAAAAAGCAATTAACCCTGAAACGTGGTTAACAGCCGTAAAGTGAGTGCTTTCA
GGGTGATCGGAGGTTTTATT

Downstream 100 bases:

>100_bases
GATTATCTGCGGCGGCAGGCCTTGATGTATACACCAGAAAAGACAAGGGCGCGGGAGACCGCGCCCTTTGACCGTTAAAT
AAAGGGACTTGTTTGTATGA

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MRLSLWTATFIVFLTLTVSIGPGNATDGPGRFESLKRFSQVLDLVERFYVSDVSRDELMEGAIRGMLQNLDPHSAFLDAA
EYREMQESTSGEFFGIGIEITQQNDRLVVVAPIADTPAARAGLRAGDIILAVDGKLTQEMTLRESVSRIRGPRGSTVKLT
ILHEGENSPETVSIERDSIPLISVKSHELEPGYLWVRLSRFSERTTNELHDAIREERKRGPIKGLILDLRNNPGGLLDQA
VHVADTFLSEGTIVSIKGRIESNNRDFKATAQATDVKAPLVVLVNAGSASASEIVAGALRDHKRGLLLGERTFGKGSVQN
VIPLADGSGLKLTIALYHTPDGTSIQAEGVEPDIKLPFVQPAREEESKAKHPFGIMREKDLARHLENGEDKKSPETERDK
ESVASLERDNQLRMALQLVKQLPRLQAIH

Sequences:

>Translated_429_residues
MRLSLWTATFIVFLTLTVSIGPGNATDGPGRFESLKRFSQVLDLVERFYVSDVSRDELMEGAIRGMLQNLDPHSAFLDAA
EYREMQESTSGEFFGIGIEITQQNDRLVVVAPIADTPAARAGLRAGDIILAVDGKLTQEMTLRESVSRIRGPRGSTVKLT
ILHEGENSPETVSIERDSIPLISVKSHELEPGYLWVRLSRFSERTTNELHDAIREERKRGPIKGLILDLRNNPGGLLDQA
VHVADTFLSEGTIVSIKGRIESNNRDFKATAQATDVKAPLVVLVNAGSASASEIVAGALRDHKRGLLLGERTFGKGSVQN
VIPLADGSGLKLTIALYHTPDGTSIQAEGVEPDIKLPFVQPAREEESKAKHPFGIMREKDLARHLENGEDKKSPETERDK
ESVASLERDNQLRMALQLVKQLPRLQAIH
>Mature_429_residues
MRLSLWTATFIVFLTLTVSIGPGNATDGPGRFESLKRFSQVLDLVERFYVSDVSRDELMEGAIRGMLQNLDPHSAFLDAA
EYREMQESTSGEFFGIGIEITQQNDRLVVVAPIADTPAARAGLRAGDIILAVDGKLTQEMTLRESVSRIRGPRGSTVKLT
ILHEGENSPETVSIERDSIPLISVKSHELEPGYLWVRLSRFSERTTNELHDAIREERKRGPIKGLILDLRNNPGGLLDQA
VHVADTFLSEGTIVSIKGRIESNNRDFKATAQATDVKAPLVVLVNAGSASASEIVAGALRDHKRGLLLGERTFGKGSVQN
VIPLADGSGLKLTIALYHTPDGTSIQAEGVEPDIKLPFVQPAREEESKAKHPFGIMREKDLARHLENGEDKKSPETERDK
ESVASLERDNQLRMALQLVKQLPRLQAIH

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=413, Percent_Identity=29.5399515738499, Blast_Score=128, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47201; Mature: 47201

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSLWTATFIVFLTLTVSIGPGNATDGPGRFESLKRFSQVLDLVERFYVSDVSRDELME
CEEEHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
GAIRGMLQNLDPHSAFLDAAEYREMQESTSGEFFGIGIEITQQNDRLVVVAPIADTPAAR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEECCCCCHHH
AGLRAGDIILAVDGKLTQEMTLRESVSRIRGPRGSTVKLTILHEGENSPETVSIERDSIP
CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEECCCCC
LISVKSHELEPGYLWVRLSRFSERTTNELHDAIREERKRGPIKGLILDLRNNPGGLLDQA
EEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHH
VHVADTFLSEGTIVSIKGRIESNNRDFKATAQATDVKAPLVVLVNAGSASASEIVAGALR
HHHHHHHHCCCCEEEEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHH
DHKRGLLLGERTFGKGSVQNVIPLADGSGLKLTIALYHTPDGTSIQAEGVEPDIKLPFVQ
HCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCC
PAREEESKAKHPFGIMREKDLARHLENGEDKKSPETERDKESVASLERDNQLRMALQLVK
CCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
QLPRLQAIH
HCHHHCCCC
>Mature Secondary Structure
MRLSLWTATFIVFLTLTVSIGPGNATDGPGRFESLKRFSQVLDLVERFYVSDVSRDELME
CEEEHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
GAIRGMLQNLDPHSAFLDAAEYREMQESTSGEFFGIGIEITQQNDRLVVVAPIADTPAAR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEECCCCCHHH
AGLRAGDIILAVDGKLTQEMTLRESVSRIRGPRGSTVKLTILHEGENSPETVSIERDSIP
CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEECCCCC
LISVKSHELEPGYLWVRLSRFSERTTNELHDAIREERKRGPIKGLILDLRNNPGGLLDQA
EEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHH
VHVADTFLSEGTIVSIKGRIESNNRDFKATAQATDVKAPLVVLVNAGSASASEIVAGALR
HHHHHHHHCCCCEEEEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHH
DHKRGLLLGERTFGKGSVQNVIPLADGSGLKLTIALYHTPDGTSIQAEGVEPDIKLPFVQ
HCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCC
PAREEESKAKHPFGIMREKDLARHLENGEDKKSPETERDKESVASLERDNQLRMALQLVK
CCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
QLPRLQAIH
HCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]