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The map label for this gene is yecS [H]

Identifier: 78356476

GI number: 78356476

Start: 1456645

End: 1457337

Strand: Direct

Name: yecS [H]

Synonym: Dde_1431

Alternate gene names: 78356476

Gene position: 1456645-1457337 (Clockwise)

Preceding gene: 78356475

Following gene: 78356477

Centisome position: 39.05

GC content: 54.55

Gene sequence:

>693_bases
ATGCAGTGGAATGTTGTCTGGGACAATCTTGATTATCTGCTTATCGGTTCATACCCCGAAGGGCCTCTCGGCGGTATTGC
GCTCAGTATCGTTCTGTCACTGGGCGGCATACTGGGTGCGTTCTGGCTGGGGCTTGCCCTGGGGCTGATGCGTCTTTCAA
AACGCTGGCCGGTGCGGTTGCCGGCGGTGCTGTTTATTGAAATTATCCGCGGAACGCCGCTGTTGCTTCTGCTGTTCTGG
TTTTATTTTCTTGCACCTGTGGTGTTGGGGCAGACGCTGCCCGAAGTGGAATGTGCATTGATAACCTTTGTGGTCTTTAC
CAGTGCATATATAGCGGAAATAGTGCGTGCAGGTGTGCTTGCACTGCCGCAAGGGCAGATGGAAGCGGCCCGCGGTACGG
GCCTGACCAAACTGCAGGCCATGCGTTTTGTCATTTTGCCGCAGGCGCTGCGCAACATGATACCTTCATTTGTGAACCAG
TTTGTCAGCCTGACCAAAGATACCTCGCTGGCATACGTGATAGGTGTGGCGGAGCTGACCCGCGCCGCGGTGCAGGTGAA
CAACCGCACCCTTTCCGCACCCATGGAGATATACTTTACCATCCTTGTCATGTACTTTCTTATCTGTTACGCGCTCACTT
CCGCCAGCCGCCGGCTGGAAAAGCAGATGAAGCGCTATCAGGCAAGAGGATAA

Upstream 100 bases:

>100_bases
GGCCACGCTGGTATATCTGTGCATTTCGCTGGCTGTTTCCTTTACGGTGACCCAGTACAATAGGTACTTTTTGCGTACCG
TCAGGTATTAGGGGGCAGCC

Downstream 100 bases:

>100_bases
TATGGCTGATCTGATTCGTATTGACATTGTCGTGCCCGAGGAGTTCGAGGACATCACCACCGGTGTGCTGACCCTCAGAG
TGGCACAGGGGTGGGAAGAA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MQWNVVWDNLDYLLIGSYPEGPLGGIALSIVLSLGGILGAFWLGLALGLMRLSKRWPVRLPAVLFIEIIRGTPLLLLLFW
FYFLAPVVLGQTLPEVECALITFVVFTSAYIAEIVRAGVLALPQGQMEAARGTGLTKLQAMRFVILPQALRNMIPSFVNQ
FVSLTKDTSLAYVIGVAELTRAAVQVNNRTLSAPMEIYFTILVMYFLICYALTSASRRLEKQMKRYQARG

Sequences:

>Translated_230_residues
MQWNVVWDNLDYLLIGSYPEGPLGGIALSIVLSLGGILGAFWLGLALGLMRLSKRWPVRLPAVLFIEIIRGTPLLLLLFW
FYFLAPVVLGQTLPEVECALITFVVFTSAYIAEIVRAGVLALPQGQMEAARGTGLTKLQAMRFVILPQALRNMIPSFVNQ
FVSLTKDTSLAYVIGVAELTRAAVQVNNRTLSAPMEIYFTILVMYFLICYALTSASRRLEKQMKRYQARG
>Mature_230_residues
MQWNVVWDNLDYLLIGSYPEGPLGGIALSIVLSLGGILGAFWLGLALGLMRLSKRWPVRLPAVLFIEIIRGTPLLLLLFW
FYFLAPVVLGQTLPEVECALITFVVFTSAYIAEIVRAGVLALPQGQMEAARGTGLTKLQAMRFVILPQALRNMIPSFVNQ
FVSLTKDTSLAYVIGVAELTRAAVQVNNRTLSAPMEIYFTILVMYFLICYALTSASRRLEKQMKRYQARG

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=224, Percent_Identity=38.8392857142857, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1787030, Length=224, Percent_Identity=35.2678571428571, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=37.5609756097561, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=34.8837209302326, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788645, Length=204, Percent_Identity=32.843137254902, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI48994930, Length=197, Percent_Identity=35.5329949238579, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1786874, Length=196, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787087, Length=225, Percent_Identity=25.3333333333333, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787086, Length=222, Percent_Identity=26.1261261261261, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25607; Mature: 25607

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWNVVWDNLDYLLIGSYPEGPLGGIALSIVLSLGGILGAFWLGLALGLMRLSKRWPVRL
CCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
PAVLFIEIIRGTPLLLLLFWFYFLAPVVLGQTLPEVECALITFVVFTSAYIAEIVRAGVL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPQGQMEAARGTGLTKLQAMRFVILPQALRNMIPSFVNQFVSLTKDTSLAYVIGVAELT
HCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RAAVQVNNRTLSAPMEIYFTILVMYFLICYALTSASRRLEKQMKRYQARG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQWNVVWDNLDYLLIGSYPEGPLGGIALSIVLSLGGILGAFWLGLALGLMRLSKRWPVRL
CCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
PAVLFIEIIRGTPLLLLLFWFYFLAPVVLGQTLPEVECALITFVVFTSAYIAEIVRAGVL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPQGQMEAARGTGLTKLQAMRFVILPQALRNMIPSFVNQFVSLTKDTSLAYVIGVAELT
HCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RAAVQVNNRTLSAPMEIYFTILVMYFLICYALTSASRRLEKQMKRYQARG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]