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The map label for this gene is ygiQ [C]

Identifier: 78356406

GI number: 78356406

Start: 1374486

End: 1376426

Strand: Reverse

Name: ygiQ [C]

Synonym: Dde_1359

Alternate gene names: 78356406

Gene position: 1376426-1374486 (Counterclockwise)

Preceding gene: 78356409

Following gene: 78356405

Centisome position: 36.9

GC content: 62.39

Gene sequence:

>1941_bases
ATGCGCATACATACATCCTCTGTGCCCGCCATGCCTGCGGGCCGAACGCCCCTTGAGCAACCCGAATTTTTACCCATGAC
CGCAGCCGATGTAAAACACATAGGCTGGGACGGCATAGATATTCTGCTGGTAACCGGTGACGGATACGTAGACCACCCCA
GCTTTGCCGCAGCCATACTGGGGCGGTGGCTTGTGGCGCATGGCTACCGGGTGGGCGTGGCCGCCCAGCCGGCCTGGGAC
AGCACAGCCGATCTGGAAAAAATGGGCAGACCGGCTCTTTTTGCCGGCGTAACAGCCGGAGCGCTCGATTCCATGCTGGC
CCACTATACAGCATTTCGCAAAAAACGCTCCGACGATGCATATACCCCCGGCGGCAAAGCAGGAGCACGCCCCAACAGGG
CGACCATAGTATACACCAATCTTGTGCGGCGCGCCTTTCCCGGTCTGCCCGTAATTCTCGGAGGCATAGAGGCTTCGCTG
CGGCGCATAACACATTACGATTTCTGGACGGACAAACTGCGCAGACCGCTGCTGCTGGACAGCAAAGCCGACGCCATAAT
CTACGGCATGGGCGAACGGGCCATGCTGGAAGCGGCCGTGGCTCTGGATGAAAACGGCTATGCGCACCAGCAGGACACCG
GAGCACTGCCGCCGCTGTGGACTGTTTTTTCCGCCCTGCGCGGCATGGCCTGCATGGTACCCGCTGACTACGCTCCGGCG
GAAGCCGATTTTTTTGAGCTGCCCGCCCACGAAGCCATCGAAAAAGCCCCGCACCTGCTGCTGCAGGCTACCGTGATGCT
GGAAAAGCAGGTGCACGCCATGAACGCTCCGGCCATCCAGCCCGCGGGAGGCCGCAAGGTACTGCTTACGGCACCGGCCC
ACCCCCTTGGTGAAGAGGAAATGGACCGTCTGTACTCGCTGCCCTTTGCACGCACGGCGCACCCTGCCTACACCAGTCCC
ATTCCGGCAACGGATATGATGCTGACTTCAGTCACCACACACCGCGGCTGCGGGGGCGGATGCTCATTCTGTTCACTGGC
GCTCCATCAGGGCAGGCGCATTGCATCGCGCAGCCGCAAATCGGTCATCGAAGAGGTGCGGGCCATGACCCGCCGTGCAG
ACTGGAAAGGCACCATAAGCGATGTGGGCGGACCGAGCGCCAACATGTGGCAGGCCGCATGCGCGGCCGACCCCGCCCGC
TGCCGCAGGGAAAGCTGCATGCACCCTTCGGTGTGCAAGGCATTCAAGGCTCAGCAGCCCGCCGCCATTGACCTTCTGCG
CACCATACGCGGCATGGACAAAGTACGCCATGTGCGCGTGGCCAGCGGGGTGCGGTATGATCTGGCGCTGAAGGATGACA
CAGCGCTGCGCGCCTATACCATGGAATTCACCGGCGGCCAGCTTAAAGTGGCGCCGGAACACATCTGTGACAACGTACTG
GAGCGCATGCGCAAGCCCGGACTTCCCGCCTTTGAAGCCTTTCTCGAAGCTTTTGAAACTTTCTCGCGTGAAGCCGGTAA
AGAGCAATATGTCATTCCCTACCTTATGAGTGCGTTTCCCGGCTGCACGGACGACGACATGCGCACACTGGGCCGCTGGC
TGCGTCAGCGCGGCTGGCAGCCCCAGCAGGTGCAGTGTTTCATACCCACGCCCGGAACAGTGGCCACCGCCATGTACTAT
GCCGGTATCGACCTGCAGGGAGACCCCATATATGTCGCCCGCACCGATGCCGAACGTCTGCGCCAGCACCACATACTCAT
TCCCTCCCACGGGGGGGCACAGGGCGCTGCCGGCAAAAAGCACGGGCAACAGCGAAAAAACGTCCCCCGCCATGCCGCCG
GAAAACAGCAGGCTGCACAGCAGACCCGGCGGGACGACGACCGCAGATCCCGCGGTCGCAGCAGCGCGCGCCCCTCACGG
CCGCAGCGCAGAAGGGGCTGA

Upstream 100 bases:

>100_bases
ATCTGATTTGCGGTGCCAGTTCAACACACTGCAGCAGGAAAGCACCGCCACCCCGCACAATGGCCTTGCGCAGCGGCAGG
GCGCACCCTATATTCGCGCC

Downstream 100 bases:

>100_bases
GCCGGACCGGATACCGTTCCTCAAAGGATGCACGCAACGCGCGCATCCTTTTTTCATACTTGAAAAAGCAGTGTCCCCTG
ACGTAATGACCAGAACACAG

Product: Elongator protein 3/MiaB/NifB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 646

Protein sequence:

>646_residues
MRIHTSSVPAMPAGRTPLEQPEFLPMTAADVKHIGWDGIDILLVTGDGYVDHPSFAAAILGRWLVAHGYRVGVAAQPAWD
STADLEKMGRPALFAGVTAGALDSMLAHYTAFRKKRSDDAYTPGGKAGARPNRATIVYTNLVRRAFPGLPVILGGIEASL
RRITHYDFWTDKLRRPLLLDSKADAIIYGMGERAMLEAAVALDENGYAHQQDTGALPPLWTVFSALRGMACMVPADYAPA
EADFFELPAHEAIEKAPHLLLQATVMLEKQVHAMNAPAIQPAGGRKVLLTAPAHPLGEEEMDRLYSLPFARTAHPAYTSP
IPATDMMLTSVTTHRGCGGGCSFCSLALHQGRRIASRSRKSVIEEVRAMTRRADWKGTISDVGGPSANMWQAACAADPAR
CRRESCMHPSVCKAFKAQQPAAIDLLRTIRGMDKVRHVRVASGVRYDLALKDDTALRAYTMEFTGGQLKVAPEHICDNVL
ERMRKPGLPAFEAFLEAFETFSREAGKEQYVIPYLMSAFPGCTDDDMRTLGRWLRQRGWQPQQVQCFIPTPGTVATAMYY
AGIDLQGDPIYVARTDAERLRQHHILIPSHGGAQGAAGKKHGQQRKNVPRHAAGKQQAAQQTRRDDDRRSRGRSSARPSR
PQRRRG

Sequences:

>Translated_646_residues
MRIHTSSVPAMPAGRTPLEQPEFLPMTAADVKHIGWDGIDILLVTGDGYVDHPSFAAAILGRWLVAHGYRVGVAAQPAWD
STADLEKMGRPALFAGVTAGALDSMLAHYTAFRKKRSDDAYTPGGKAGARPNRATIVYTNLVRRAFPGLPVILGGIEASL
RRITHYDFWTDKLRRPLLLDSKADAIIYGMGERAMLEAAVALDENGYAHQQDTGALPPLWTVFSALRGMACMVPADYAPA
EADFFELPAHEAIEKAPHLLLQATVMLEKQVHAMNAPAIQPAGGRKVLLTAPAHPLGEEEMDRLYSLPFARTAHPAYTSP
IPATDMMLTSVTTHRGCGGGCSFCSLALHQGRRIASRSRKSVIEEVRAMTRRADWKGTISDVGGPSANMWQAACAADPAR
CRRESCMHPSVCKAFKAQQPAAIDLLRTIRGMDKVRHVRVASGVRYDLALKDDTALRAYTMEFTGGQLKVAPEHICDNVL
ERMRKPGLPAFEAFLEAFETFSREAGKEQYVIPYLMSAFPGCTDDDMRTLGRWLRQRGWQPQQVQCFIPTPGTVATAMYY
AGIDLQGDPIYVARTDAERLRQHHILIPSHGGAQGAAGKKHGQQRKNVPRHAAGKQQAAQQTRRDDDRRSRGRSSARPSR
PQRRRG
>Mature_646_residues
MRIHTSSVPAMPAGRTPLEQPEFLPMTAADVKHIGWDGIDILLVTGDGYVDHPSFAAAILGRWLVAHGYRVGVAAQPAWD
STADLEKMGRPALFAGVTAGALDSMLAHYTAFRKKRSDDAYTPGGKAGARPNRATIVYTNLVRRAFPGLPVILGGIEASL
RRITHYDFWTDKLRRPLLLDSKADAIIYGMGERAMLEAAVALDENGYAHQQDTGALPPLWTVFSALRGMACMVPADYAPA
EADFFELPAHEAIEKAPHLLLQATVMLEKQVHAMNAPAIQPAGGRKVLLTAPAHPLGEEEMDRLYSLPFARTAHPAYTSP
IPATDMMLTSVTTHRGCGGGCSFCSLALHQGRRIASRSRKSVIEEVRAMTRRADWKGTISDVGGPSANMWQAACAADPAR
CRRESCMHPSVCKAFKAQQPAAIDLLRTIRGMDKVRHVRVASGVRYDLALKDDTALRAYTMEFTGGQLKVAPEHICDNVL
ERMRKPGLPAFEAFLEAFETFSREAGKEQYVIPYLMSAFPGCTDDDMRTLGRWLRQRGWQPQQVQCFIPTPGTVATAMYY
AGIDLQGDPIYVARTDAERLRQHHILIPSHGGAQGAAGKKHGQQRKNVPRHAAGKQQAAQQTRRDDDRRSRGRSSARPSR
PQRRRG

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=639, Percent_Identity=41.0015649452269, Blast_Score=473, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 70935; Mature: 70935

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIHTSSVPAMPAGRTPLEQPEFLPMTAADVKHIGWDGIDILLVTGDGYVDHPSFAAAIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHH
GRWLVAHGYRVGVAAQPAWDSTADLEKMGRPALFAGVTAGALDSMLAHYTAFRKKRSDDA
HHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCC
YTPGGKAGARPNRATIVYTNLVRRAFPGLPVILGGIEASLRRITHYDFWTDKLRRPLLLD
CCCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEC
SKADAIIYGMGERAMLEAAVALDENGYAHQQDTGALPPLWTVFSALRGMACMVPADYAPA
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCC
EADFFELPAHEAIEKAPHLLLQATVMLEKQVHAMNAPAIQPAGGRKVLLTAPAHPLGEEE
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHH
MDRLYSLPFARTAHPAYTSPIPATDMMLTSVTTHRGCGGGCSFCSLALHQGRRIASRSRK
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHH
SVIEEVRAMTRRADWKGTISDVGGPSANMWQAACAADPARCRRESCMHPSVCKAFKAQQP
HHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCC
AAIDLLRTIRGMDKVRHVRVASGVRYDLALKDDTALRAYTMEFTGGQLKVAPEHICDNVL
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCEEEECHHHHHHHHH
ERMRKPGLPAFEAFLEAFETFSREAGKEQYVIPYLMSAFPGCTDDDMRTLGRWLRQRGWQ
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
PQQVQCFIPTPGTVATAMYYAGIDLQGDPIYVARTDAERLRQHHILIPSHGGAQGAAGKK
CCCEEEEECCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHCEEEEECCCCCCCCCCHH
HGQQRKNVPRHAAGKQQAAQQTRRDDDRRSRGRSSARPSRPQRRRG
HCHHHHCCCCHHCCHHHHHHHHHCCHHHHHCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MRIHTSSVPAMPAGRTPLEQPEFLPMTAADVKHIGWDGIDILLVTGDGYVDHPSFAAAIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHH
GRWLVAHGYRVGVAAQPAWDSTADLEKMGRPALFAGVTAGALDSMLAHYTAFRKKRSDDA
HHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCC
YTPGGKAGARPNRATIVYTNLVRRAFPGLPVILGGIEASLRRITHYDFWTDKLRRPLLLD
CCCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEC
SKADAIIYGMGERAMLEAAVALDENGYAHQQDTGALPPLWTVFSALRGMACMVPADYAPA
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCC
EADFFELPAHEAIEKAPHLLLQATVMLEKQVHAMNAPAIQPAGGRKVLLTAPAHPLGEEE
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHH
MDRLYSLPFARTAHPAYTSPIPATDMMLTSVTTHRGCGGGCSFCSLALHQGRRIASRSRK
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHH
SVIEEVRAMTRRADWKGTISDVGGPSANMWQAACAADPARCRRESCMHPSVCKAFKAQQP
HHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCC
AAIDLLRTIRGMDKVRHVRVASGVRYDLALKDDTALRAYTMEFTGGQLKVAPEHICDNVL
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCEEEECHHHHHHHHH
ERMRKPGLPAFEAFLEAFETFSREAGKEQYVIPYLMSAFPGCTDDDMRTLGRWLRQRGWQ
HHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
PQQVQCFIPTPGTVATAMYYAGIDLQGDPIYVARTDAERLRQHHILIPSHGGAQGAAGKK
CCCEEEEECCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHCEEEEECCCCCCCCCCHH
HGQQRKNVPRHAAGKQQAAQQTRRDDDRRSRGRSSARPSRPQRRRG
HCHHHHCCCCHHCCHHHHHHHHHCCHHHHHCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA