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The map label for this gene is yubD [H]

Identifier: 78356347

GI number: 78356347

Start: 1318669

End: 1319412

Strand: Direct

Name: yubD [H]

Synonym: Dde_1300

Alternate gene names: 78356347

Gene position: 1318669-1319412 (Clockwise)

Preceding gene: 78356346

Following gene: 78356352

Centisome position: 35.35

GC content: 55.38

Gene sequence:

>744_bases
GTGATACAGATAGGACGTGCAACGCTACACAGAGGAGAGGCTTTGAGCCTCATACGAACCATGCCGGATGAATCCGTGGA
TGCGATTGTAACAGACCCCCCGTACTCAAGCGGCGGACTCCATACCGGCCAACGTCAGCGACCGCCGGGTGTAAAATATC
AAAATTCAGATGCCCGGCGCCGCCATGCTGAGTTTCACGGCGACAACCGGGACCAAAGGTCCTTCACGCTATGGGCATCG
CTCTGGATTGCGGAATGCTATAGGGTAGCGAAGGCAGGAGCATCCTGCATGGTGTTTACAGACTGGAGGCAGCTGCCTGC
CATGACGGACGCCATGCAGATCGGCGGCTGGACATGGCGAGGCATCGTCGTCTGGGATAAGCCGTCGGCTCGCCCCATCC
TTGGTGAGTTCCGACGCCAATGCGAATATGTGGTGTTCGGTGTAAAAGGCAGGCTAATGCCCGCACACCGGCGATGCTTA
CCTGGAGTTTATCGACATTCCATCATCGCACACCAAAAGCGTAGACACATGACAGAAAAACCCATGCCACTGATCCATGA
TTTATTGGAAGTGACTCCCCCCGGCTGCACTGTCCTGGACCCCTTCATGGGCTCAGCCACCACAGGCGCAGCGTGCCTGA
AGACGAACCGAAACTTCATAGGTATAGAGTTGTCTCCCGAATACTTCCAGAGCGCCTGTGAAAGGCTGGAGTTGGTGGCA
AATCCGAGTACAGAAAATAGCTAA

Upstream 100 bases:

>100_bases
ATAGACCTGGAAATCAAGTGCAGCCGGTGCGGCACCATTAACCACATGAGAACCGAGAGTTCCGGCCGAGAAGCCCGCGA
GGCTCACTCGGAGATACAAG

Downstream 100 bases:

>100_bases
AGGAAACCCCCGGCATCTGCCGGGGGGGGTACGGCTGGCTGAAGTGCAAAATTATACTGCGCGTTGAGCAAAATTAGGCG
GCGCATTACAGCGGGCAGCC

Product: adenine specific DNA methyltransferase

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MIQIGRATLHRGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPPGVKYQNSDARRRHAEFHGDNRDQRSFTLWAS
LWIAECYRVAKAGASCMVFTDWRQLPAMTDAMQIGGWTWRGIVVWDKPSARPILGEFRRQCEYVVFGVKGRLMPAHRRCL
PGVYRHSIIAHQKRRHMTEKPMPLIHDLLEVTPPGCTVLDPFMGSATTGAACLKTNRNFIGIELSPEYFQSACERLELVA
NPSTENS

Sequences:

>Translated_247_residues
MIQIGRATLHRGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPPGVKYQNSDARRRHAEFHGDNRDQRSFTLWAS
LWIAECYRVAKAGASCMVFTDWRQLPAMTDAMQIGGWTWRGIVVWDKPSARPILGEFRRQCEYVVFGVKGRLMPAHRRCL
PGVYRHSIIAHQKRRHMTEKPMPLIHDLLEVTPPGCTVLDPFMGSATTGAACLKTNRNFIGIELSPEYFQSACERLELVA
NPSTENS
>Mature_247_residues
MIQIGRATLHRGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPPGVKYQNSDARRRHAEFHGDNRDQRSFTLWAS
LWIAECYRVAKAGASCMVFTDWRQLPAMTDAMQIGGWTWRGIVVWDKPSARPILGEFRRQCEYVVFGVKGRLMPAHRRCL
PGVYRHSIIAHQKRRHMTEKPMPLIHDLLEVTPPGCTVLDPFMGSATTGAACLKTNRNFIGIELSPEYFQSACERLELVA
NPSTENS

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI87082238, Length=273, Percent_Identity=27.1062271062271, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 27860; Mature: 27860

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQIGRATLHRGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPPGVKYQNSDARR
CEECCCHHHHCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH
RHAEFHGDNRDQRSFTLWASLWIAECYRVAKAGASCMVFTDWRQLPAMTDAMQIGGWTWR
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHCCEEEE
GIVVWDKPSARPILGEFRRQCEYVVFGVKGRLMPAHRRCLPGVYRHSIIAHQKRRHMTEK
EEEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCC
PMPLIHDLLEVTPPGCTVLDPFMGSATTGAACLKTNRNFIGIELSPEYFQSACERLELVA
CHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHEECCCCEEEEEECHHHHHHHHHHHHHHC
NPSTENS
CCCCCCC
>Mature Secondary Structure
MIQIGRATLHRGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPPGVKYQNSDARR
CEECCCHHHHCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH
RHAEFHGDNRDQRSFTLWASLWIAECYRVAKAGASCMVFTDWRQLPAMTDAMQIGGWTWR
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHCCEEEE
GIVVWDKPSARPILGEFRRQCEYVVFGVKGRLMPAHRRCLPGVYRHSIIAHQKRRHMTEK
EEEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCC
PMPLIHDLLEVTPPGCTVLDPFMGSATTGAACLKTNRNFIGIELSPEYFQSACERLELVA
CHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHEECCCCEEEEEECHHHHHHHHHHHHHHC
NPSTENS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]