Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 78356312

GI number: 78356312

Start: 1280548

End: 1280922

Strand: Direct

Name: yjgF [C]

Synonym: Dde_1265

Alternate gene names: 78356312

Gene position: 1280548-1280922 (Clockwise)

Preceding gene: 78356310

Following gene: 78356313

Centisome position: 34.33

GC content: 57.33

Gene sequence:

>375_bases
ATGAAAAAGATTGTACACACCGATGCCGCCCCCGCAGCTATCGGTCCGTATTCACAGGCCGTGCTCAAAGGTGACACCCT
GTATATTTCAGGCCAGCTGCCCGTTGACCCCGCCACAGGCGAACTGGTGGACGGTATTGAAGCTCAGACCAGGCAGAGCC
TGACCAACGCCAAGGCAATTCTGGAAGCTGCCGGTTCTTCGCTGGACAAGGTGTGCCGCACCGGCGTGTTTATGAAAGAT
CTTTCGCAGTTTGCCCAGATGAACGCCGTCTACGCGGAGTTTTTCTCCACCGCATTTCCCGCCCGCAGCTGCGTGCAGGT
AGCCGCCCTGCCCAAGGATGCGCTTGTGGAAATCGAACTCATTGCCGAAGTGTAG

Upstream 100 bases:

>100_bases
GTAACTACATGATATGACATAAAATTAATGTCAGGTATTCATTTTGGCATCCTCTTTGCCTTAAGGGCGGCATACCTACT
GACATTTTTAGGAGGATTTC

Downstream 100 bases:

>100_bases
GTCGCAGTTTCATGAGTAACATCCGTTTTATTGCCAACCAGAAGGCCAGACAGCAGACAGACAAGGTGGACGTGAGCTTT
CTGTCCTGCGCAGAGGCGGA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MKKIVHTDAAPAAIGPYSQAVLKGDTLYISGQLPVDPATGELVDGIEAQTRQSLTNAKAILEAAGSSLDKVCRTGVFMKD
LSQFAQMNAVYAEFFSTAFPARSCVQVAALPKDALVEIELIAEV

Sequences:

>Translated_124_residues
MKKIVHTDAAPAAIGPYSQAVLKGDTLYISGQLPVDPATGELVDGIEAQTRQSLTNAKAILEAAGSSLDKVCRTGVFMKD
LSQFAQMNAVYAEFFSTAFPARSCVQVAALPKDALVEIELIAEV
>Mature_124_residues
MKKIVHTDAAPAAIGPYSQAVLKGDTLYISGQLPVDPATGELVDGIEAQTRQSLTNAKAILEAAGSSLDKVCRTGVFMKD
LSQFAQMNAVYAEFFSTAFPARSCVQVAALPKDALVEIELIAEV

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=45.5284552845528, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=54.4, Blast_Score=134, Evalue=2e-33,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=51.2, Blast_Score=124, Evalue=2e-30,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=33.8709677419355, Blast_Score=79, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71982075, Length=121, Percent_Identity=48.7603305785124, Blast_Score=129, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI25148896, Length=121, Percent_Identity=48.7603305785124, Blast_Score=129, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI71982068, Length=121, Percent_Identity=48.7603305785124, Blast_Score=129, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=42.3728813559322, Blast_Score=101, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=46, Blast_Score=95, Evalue=3e-21,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=47.9674796747967, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13116; Mature: 13116

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVHTDAAPAAIGPYSQAVLKGDTLYISGQLPVDPATGELVDGIEAQTRQSLTNAKAI
CCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LEAAGSSLDKVCRTGVFMKDLSQFAQMNAVYAEFFSTAFPARSCVQVAALPKDALVEIEL
HHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHEEEEE
IAEV
EECC
>Mature Secondary Structure
MKKIVHTDAAPAAIGPYSQAVLKGDTLYISGQLPVDPATGELVDGIEAQTRQSLTNAKAI
CCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LEAAGSSLDKVCRTGVFMKDLSQFAQMNAVYAEFFSTAFPARSCVQVAALPKDALVEIEL
HHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHEEEEE
IAEV
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]