Click here to switch to the map view.

The map label for this gene is ygeV [H]

Identifier: 78356311

GI number: 78356311

Start: 1278502

End: 1280250

Strand: Reverse

Name: ygeV [H]

Synonym: Dde_1264

Alternate gene names: 78356311

Gene position: 1280250-1278502 (Counterclockwise)

Preceding gene: 78356317

Following gene: 78356308

Centisome position: 34.32

GC content: 57.0

Gene sequence:

>1749_bases
ATGCTCGACAGCATCGCACCGGCCATAAACCGGATTGCACAGGTCATATCCATTGTCATCGGGCTGGACGTGGAGGTGGT
GAACGCCGAATTTGTCCGCATTGCCGGTACGGGGCGCTATGCCGAGGGCGTGGGTACCAGCATCATAGAGGCAGGACAGG
TCTACCGGACGGCACGCCGCACCGGCCGCCCCGTGTATGTGGAAAAACCCCGCTTTCATCCCATCTGTGACGGCTGCAAA
AAAAAAGACACCTGCGAAGAAAAGCTCACGCTCTGCGCCCCCATCAAGATTGACGGCAAGGTGGAAGGCATCATCGGCAT
TATCTGCTTCAATGAAGAAGACCGGGCGCGCATACTGAAAACCCGTGATTCATTTCTCGACTTCGTGGACATGATGTCCA
ACATTGTCATCAGCGCCGCACGGGACCAGCAGCGCATAACCATGATGTCCAACACCGTGGACATGCTGCAGAGTGTGGTG
GATGCCTATTCCGACGGGGTGTTTGTTTTTGGCCGCGACGGACAGCTGACCTATGTGAACGAACATGCCAAACGCACCAT
ACGCCTGCCCGACCCGCCCCTGCCGGCCAACCTGACTCTGACTGCCACCGGCAACACGGTGGAAGACGCCGACGAATACG
AACTAAGCTACAACGGCAAGGAACTGATGGTCATGGGTCGCACCGTGGAACTGGCCGCGCAGGACCCGCGGTTTGCACGT
CTGGTCATTTTTGAACATCAGCGCGATTTCACCAGGCGCATGTCGCGGTTCACATCGCAGGCCCATTCGGACGGGCTGGG
GGCCATACTGGGCAACTCGCCCGCCGTGGTGCGGCTGAAAGAACGCGTGCGCAGCATCGCCACATCATCTTCCACCGTGC
TCATAGAAGGCGAAAGCGGTACCGGCAAGGAACTGTTTGCCCGTGCCATTCACAAGGAAAGCAACAGACACGACCAGCCG
TTCATTGCCATCAACTGCGGGGCCATTCCTGATTCACTGCTGGAAAGCGAACTTTTCGGCTATATAAGCGGAGCCTTTAC
CGGTGCGCGGTCTTCCGGACGCATCGGCAAATTCGAGCTGGCCAACGGCGGGGTGCTGTTTCTGGATGAAATAAGCTCCA
TGCCCCTGTATCTGCAGGTCAAGCTGCTGCGCGTACTGCAGGAACGCACCATCACACGGCTGGGGTCCAACAAGCTTATC
AACATAGATATCCGTGTCATTGCCGCCACCAACGACAACCTCAGCGAACTTATCGCCCACAACTCGTTCCGCAGTGACCT
GTACTACCGGCTCAAGGTCATTCCTTTTGAAATCCCCCCGCTGCGCGAACGGCTGGAAGATGTGGACATGCTGACCGAAC
ATTTCTTCCGCAAGTACGGAGAACGGTTCGGCAAAAATCTGCGCCACATAGACCCGCAGTGCATGGACATGCTTAAAAGC
TACCCCTGGCCGGGCAACATCCGTGAATTTGAAAACGCCATTGAATTCATAGTCAACATGATGCCTGAAAACGGCGTGGT
GACACCTGCCGTTCTTCCCCCTTTTCTGCATGCCGCGCTGCGCGGTGAAAAAAAAGAACAGCTGGATCGGCAGGACGATA
TCATCCCCCTGAGCGAGCTTGAACGTCAGGCCATACAGCGGGCGCTGGACCGCTTCGGTTCCACCACCGGCGGCAAAAAA
CTTGCAGCCGAGCGGCTGGGCATAGGGCTGGCCACACTATACCGCAAAATCCAGCTGTACGGGCTGTAG

Upstream 100 bases:

>100_bases
AACATGCTGCAATACAGACATTTTTTCACAACAAACATAGCTTTTTCAATACAGACGCCGTCTGCAAACAGAAAAGCTAT
TATCATATCGAGAACAGAGA

Downstream 100 bases:

>100_bases
CACGCCTGCCGGATACAGGCCGCACCAGACGCGGCACAGCCTTGTGCACGCCACGCGGCTGCGGCCTGCGGCAGGACAAA
CCGGAACAGGTTACAGCGCC

Product: Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIEAGQVYRTARRTGRPVYVEKPRFHPICDGCK
KKDTCEEKLTLCAPIKIDGKVEGIIGIICFNEEDRARILKTRDSFLDFVDMMSNIVISAARDQQRITMMSNTVDMLQSVV
DAYSDGVFVFGRDGQLTYVNEHAKRTIRLPDPPLPANLTLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFAR
LVIFEHQRDFTRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESGTGKELFARAIHKESNRHDQP
FIAINCGAIPDSLLESELFGYISGAFTGARSSGRIGKFELANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLI
NIDIRVIAATNDNLSELIAHNSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMDMLKS
YPWPGNIREFENAIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSELERQAIQRALDRFGSTTGGKK
LAAERLGIGLATLYRKIQLYGL

Sequences:

>Translated_582_residues
MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIEAGQVYRTARRTGRPVYVEKPRFHPICDGCK
KKDTCEEKLTLCAPIKIDGKVEGIIGIICFNEEDRARILKTRDSFLDFVDMMSNIVISAARDQQRITMMSNTVDMLQSVV
DAYSDGVFVFGRDGQLTYVNEHAKRTIRLPDPPLPANLTLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFAR
LVIFEHQRDFTRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESGTGKELFARAIHKESNRHDQP
FIAINCGAIPDSLLESELFGYISGAFTGARSSGRIGKFELANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLI
NIDIRVIAATNDNLSELIAHNSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMDMLKS
YPWPGNIREFENAIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSELERQAIQRALDRFGSTTGGKK
LAAERLGIGLATLYRKIQLYGL
>Mature_582_residues
MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIEAGQVYRTARRTGRPVYVEKPRFHPICDGCK
KKDTCEEKLTLCAPIKIDGKVEGIIGIICFNEEDRARILKTRDSFLDFVDMMSNIVISAARDQQRITMMSNTVDMLQSVV
DAYSDGVFVFGRDGQLTYVNEHAKRTIRLPDPPLPANLTLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFAR
LVIFEHQRDFTRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESGTGKELFARAIHKESNRHDQP
FIAINCGAIPDSLLESELFGYISGAFTGARSSGRIGKFELANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLI
NIDIRVIAATNDNLSELIAHNSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMDMLKS
YPWPGNIREFENAIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSELERQAIQRALDRFGSTTGGKK
LAAERLGIGLATLYRKIQLYGL

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=597, Percent_Identity=37.6884422110553, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI87082117, Length=452, Percent_Identity=38.4955752212389, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI1788550, Length=328, Percent_Identity=45.1219512195122, Blast_Score=262, Evalue=4e-71,
Organism=Escherichia coli, GI1789087, Length=326, Percent_Identity=45.0920245398773, Blast_Score=262, Evalue=4e-71,
Organism=Escherichia coli, GI1790437, Length=309, Percent_Identity=45.3074433656958, Blast_Score=261, Evalue=8e-71,
Organism=Escherichia coli, GI1788905, Length=256, Percent_Identity=50, Blast_Score=248, Evalue=8e-67,
Organism=Escherichia coli, GI1786524, Length=328, Percent_Identity=43.5975609756098, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1790299, Length=333, Percent_Identity=39.6396396396396, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI87082152, Length=226, Percent_Identity=47.787610619469, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI1787583, Length=335, Percent_Identity=35.5223880597015, Blast_Score=193, Evalue=3e-50,
Organism=Escherichia coli, GI87081858, Length=511, Percent_Identity=28.7671232876712, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI87081872, Length=228, Percent_Identity=39.9122807017544, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1789828, Length=235, Percent_Identity=33.1914893617021, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 65146; Mature: 65146

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIEAGQVYRTARR
CCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
TGRPVYVEKPRFHPICDGCKKKDTCEEKLTLCAPIKIDGKVEGIIGIICFNEEDRARILK
CCCCEEEECCCCCCHHCCCCCCCCHHHHCEEEECEEECCEECEEEEEEEECCCCHHHHHH
TRDSFLDFVDMMSNIVISAARDQQRITMMSNTVDMLQSVVDAYSDGVFVFGRDGQLTYVN
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEE
EHAKRTIRLPDPPLPANLTLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFAR
CCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCEEECCCCEEEEEECEEEEECCCCCEEE
LVIFEHQRDFTRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESG
EEEEECHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHCCCCEEEEECCCC
TGKELFARAIHKESNRHDQPFIAINCGAIPDSLLESELFGYISGAFTGARSSGRIGKFEL
CCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
ANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLSELIAH
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHHHH
NSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMDMLKS
CCHHHCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
YPWPGNIREFENAIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSEL
CCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHH
ERQAIQRALDRFGSTTGGKKLAAERLGIGLATLYRKIQLYGL
HHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIEAGQVYRTARR
CCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
TGRPVYVEKPRFHPICDGCKKKDTCEEKLTLCAPIKIDGKVEGIIGIICFNEEDRARILK
CCCCEEEECCCCCCHHCCCCCCCCHHHHCEEEECEEECCEECEEEEEEEECCCCHHHHHH
TRDSFLDFVDMMSNIVISAARDQQRITMMSNTVDMLQSVVDAYSDGVFVFGRDGQLTYVN
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEE
EHAKRTIRLPDPPLPANLTLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFAR
CCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCEEECCCCEEEEEECEEEEECCCCCEEE
LVIFEHQRDFTRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESG
EEEEECHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHCCCCEEEEECCCC
TGKELFARAIHKESNRHDQPFIAINCGAIPDSLLESELFGYISGAFTGARSSGRIGKFEL
CCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
ANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLSELIAH
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHHHH
NSFRSDLYYRLKVIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMDMLKS
CCHHHCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
YPWPGNIREFENAIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSEL
CCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHH
ERQAIQRALDRFGSTTGGKKLAAERLGIGLATLYRKIQLYGL
HHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]