| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is yidJ [C]
Identifier: 78356248
GI number: 78356248
Start: 1228288
End: 1229811
Strand: Direct
Name: yidJ [C]
Synonym: Dde_1201
Alternate gene names: 78356248
Gene position: 1228288-1229811 (Clockwise)
Preceding gene: 78356247
Following gene: 78356249
Centisome position: 32.93
GC content: 57.48
Gene sequence:
>1524_bases ATGACTTTTGACCGCAGTAAAATCAAAAACGTAGTCATGATCATGCTGGATACCCTGCAGTTCAACTATCTGGGCTGCTA CGGCAACAAGCAGGTCAAGACTCCGAACCTGGACAGGTTCGCCCGTCAGTCCGTTCTTTTTGAAAATGCCTACAGCGAAG GGCTGCCTACCATTCCGGTGCGCCGTGCGCTGATGACCGGCCGCTTCACCCTGCCTTACGGCGGGTGGAAGCCCCTTTCC GGCGACGACACCACCATCACCGACATCCTCTGGGGGCGCAATGTGCAGACCGCGCTCATTTATGACACCGCTCCCATGCG CCTTGCCAAGTTCGGCTATTCCAGAGGTTTTGACTATGTGGATTTCTGCCCCGGGCAGGAACTCGATCATACCACCTTTG CCGACATGCCGCTGGATCCGGCTCTCAAGCCGGAAGATTTCACGTCGCCTTCCATGGTCTGGGACAAGGACGGCAACCTG ATTGATGATGACAGCAAGCAATTGTTGGACGAGATAGGTTGTTTTCTGCGTCAGATGCAGCACCGCCGCAGTGACGCCGA CAGTTATGTGGCCAAGGTGATGAACCGGACGGAATACTGGCTGCGCGAACGGCGCGACAAAAGCCGTCCGTTCTTCCTGT GGGTGGATTCCTTTGATCCGCACGAGCCCTGGGATCCGCCGTCAGTATGGGAAGGCACTCCCTGCCCGTACGACCCCGAC TACGAAGGAAACCCCATTCTGCTGGCTCCGTGGACACCGGTGGAAGGACGCATTTCCGAACGCGAATGCGAACATGTGCG CGCCCTGTACATGGAAAAAATCACCATGGTGGATAAATGGGTGGGACGCATTCTTGATTCGCTGCGCGAACAGGGACTGA TGGACGAGACCATGGTTGTGGTCATGTCCGACCACGGGCAGCCCATGGGCAACGGTGAACACGGGCACGGCATCATGCGC AAGTCGCGCCCGTGGCCCTATGAAGAACTGGTGCACGTACCTCTGCTTATGCACATTCCCGGTGTGCAGGGCGGGCAGCG CATATCGTCTTTTGTCCAGAATGTGGATGTGACCGCCACCATCATGGATGTGATGAATCTGGCCGACACCGAAGACGGTG TGTCCGATCATGGCATGAACACATTCGGCGCCGAGAGCATGCAGGGCGAAAGCCTGCTGCCGCTCATGCGGGGCGAGGCC GATTCTGTGCGCGAGTACGCCATTGCAGGATATTACGGCATGTCGTGGTCCATCATCACCGAAGACTACAGCTATGTGCA CTGGCTTGTCAGCGAAGACGAAAAGAACCGCGCCGACTGCGTGGAAGGCGCCGACAAGGAAATGTCCGAGGAGATGTGGA CCTGCACCGCAGGAGCCAAGGTTCAGATGCCGGAACATAACGAACTGTATGACAGGCGTACCGACCCCTTCCAGCTGAAC AACATTGCCGCGCAGAAGCCCGAAGTGGCCGAAGAACTGCTGCAGAAGCTCAAGCTGGTCATTGGCGGGCTGCGCACGAC CTAA
Upstream 100 bases:
>100_bases TCGTACGCGTACCCCTGACAGGCCGCGCGCGGCCATCTGGCCGGCACAGGGAACACGCTGCGGTGAGCTTTTTCACAATC AAGCAAGCAGAGGGTTTTTC
Downstream 100 bases:
>100_bases CTCCGCAAAATACCCGCGCCGCCGGCATGGTCTGCCGGCGGCGGATGATATCATATCAGAGGTGATTCATGTTTACTCAG CTTACCGACGCAGACTTTGA
Product: sulfatase
Products: NA
Alternate protein names: Cys-type sulfatase [H]
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MTFDRSKIKNVVMIMLDTLQFNYLGCYGNKQVKTPNLDRFARQSVLFENAYSEGLPTIPVRRALMTGRFTLPYGGWKPLS GDDTTITDILWGRNVQTALIYDTAPMRLAKFGYSRGFDYVDFCPGQELDHTTFADMPLDPALKPEDFTSPSMVWDKDGNL IDDDSKQLLDEIGCFLRQMQHRRSDADSYVAKVMNRTEYWLRERRDKSRPFFLWVDSFDPHEPWDPPSVWEGTPCPYDPD YEGNPILLAPWTPVEGRISERECEHVRALYMEKITMVDKWVGRILDSLREQGLMDETMVVVMSDHGQPMGNGEHGHGIMR KSRPWPYEELVHVPLLMHIPGVQGGQRISSFVQNVDVTATIMDVMNLADTEDGVSDHGMNTFGAESMQGESLLPLMRGEA DSVREYAIAGYYGMSWSIITEDYSYVHWLVSEDEKNRADCVEGADKEMSEEMWTCTAGAKVQMPEHNELYDRRTDPFQLN NIAAQKPEVAEELLQKLKLVIGGLRTT
Sequences:
>Translated_507_residues MTFDRSKIKNVVMIMLDTLQFNYLGCYGNKQVKTPNLDRFARQSVLFENAYSEGLPTIPVRRALMTGRFTLPYGGWKPLS GDDTTITDILWGRNVQTALIYDTAPMRLAKFGYSRGFDYVDFCPGQELDHTTFADMPLDPALKPEDFTSPSMVWDKDGNL IDDDSKQLLDEIGCFLRQMQHRRSDADSYVAKVMNRTEYWLRERRDKSRPFFLWVDSFDPHEPWDPPSVWEGTPCPYDPD YEGNPILLAPWTPVEGRISERECEHVRALYMEKITMVDKWVGRILDSLREQGLMDETMVVVMSDHGQPMGNGEHGHGIMR KSRPWPYEELVHVPLLMHIPGVQGGQRISSFVQNVDVTATIMDVMNLADTEDGVSDHGMNTFGAESMQGESLLPLMRGEA DSVREYAIAGYYGMSWSIITEDYSYVHWLVSEDEKNRADCVEGADKEMSEEMWTCTAGAKVQMPEHNELYDRRTDPFQLN NIAAQKPEVAEELLQKLKLVIGGLRTT >Mature_506_residues TFDRSKIKNVVMIMLDTLQFNYLGCYGNKQVKTPNLDRFARQSVLFENAYSEGLPTIPVRRALMTGRFTLPYGGWKPLSG DDTTITDILWGRNVQTALIYDTAPMRLAKFGYSRGFDYVDFCPGQELDHTTFADMPLDPALKPEDFTSPSMVWDKDGNLI DDDSKQLLDEIGCFLRQMQHRRSDADSYVAKVMNRTEYWLRERRDKSRPFFLWVDSFDPHEPWDPPSVWEGTPCPYDPDY EGNPILLAPWTPVEGRISERECEHVRALYMEKITMVDKWVGRILDSLREQGLMDETMVVVMSDHGQPMGNGEHGHGIMRK SRPWPYEELVHVPLLMHIPGVQGGQRISSFVQNVDVTATIMDVMNLADTEDGVSDHGMNTFGAESMQGESLLPLMRGEAD SVREYAIAGYYGMSWSIITEDYSYVHWLVSEDEKNRADCVEGADKEMSEEMWTCTAGAKVQMPEHNELYDRRTDPFQLNN IAAQKPEVAEELLQKLKLVIGGLRTT
Specific function: Has sulfatase activity toward para-nitrophenyl sulfate, which is increased in presence of calcium ion [H]
COG id: COG3119
COG function: function code P; Arylsulfatase A and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sulfatase family [H]
Homologues:
Organism=Homo sapiens, GI39930577, Length=529, Percent_Identity=23.2514177693762, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24647401, Length=233, Percent_Identity=25.7510729613734, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: =3.1.6.1 [H]
Molecular weight: Translated: 57966; Mature: 57835
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFDRSKIKNVVMIMLDTLQFNYLGCYGNKQVKTPNLDRFARQSVLFENAYSEGLPTIPV CCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH RRALMTGRFTLPYGGWKPLSGDDTTITDILWGRNVQTALIYDTAPMRLAKFGYSRGFDYV HHHHHCCCEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCC DFCPGQELDHTTFADMPLDPALKPEDFTSPSMVWDKDGNLIDDDSKQLLDEIGCFLRQMQ CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH HRRSDADSYVAKVMNRTEYWLRERRDKSRPFFLWVDSFDPHEPWDPPSVWEGTPCPYDPD HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC YEGNPILLAPWTPVEGRISERECEHVRALYMEKITMVDKWVGRILDSLREQGLMDETMVV CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE VMSDHGQPMGNGEHGHGIMRKSRPWPYEELVHVPLLMHIPGVQGGQRISSFVQNVDVTAT EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHEECCCCCCHHHHHHHHHCCCHHHH IMDVMNLADTEDGVSDHGMNTFGAESMQGESLLPLMRGEADSVREYAIAGYYGMSWSIIT HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHEEEECCEEEEEE EDYSYVHWLVSEDEKNRADCVEGADKEMSEEMWTCTAGAKVQMPEHNELYDRRTDPFQLN CCCCEEEEEECCCCCCHHHHHCCCHHHHHHHHEEECCCCEEECCCCHHHHHCCCCCEEEC NIAAQKPEVAEELLQKLKLVIGGLRTT CCCCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TFDRSKIKNVVMIMLDTLQFNYLGCYGNKQVKTPNLDRFARQSVLFENAYSEGLPTIPV CCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH RRALMTGRFTLPYGGWKPLSGDDTTITDILWGRNVQTALIYDTAPMRLAKFGYSRGFDYV HHHHHCCCEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCC DFCPGQELDHTTFADMPLDPALKPEDFTSPSMVWDKDGNLIDDDSKQLLDEIGCFLRQMQ CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH HRRSDADSYVAKVMNRTEYWLRERRDKSRPFFLWVDSFDPHEPWDPPSVWEGTPCPYDPD HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC YEGNPILLAPWTPVEGRISERECEHVRALYMEKITMVDKWVGRILDSLREQGLMDETMVV CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE VMSDHGQPMGNGEHGHGIMRKSRPWPYEELVHVPLLMHIPGVQGGQRISSFVQNVDVTAT EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHEECCCCCCHHHHHHHHHCCCHHHH IMDVMNLADTEDGVSDHGMNTFGAESMQGESLLPLMRGEADSVREYAIAGYYGMSWSIIT HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHEEEECCEEEEEE EDYSYVHWLVSEDEKNRADCVEGADKEMSEEMWTCTAGAKVQMPEHNELYDRRTDPFQLN CCCCEEEEEECCCCCCHHHHHCCCHHHHHHHHEEECCCCEEECCCCHHHHHCCCCCEEEC NIAAQKPEVAEELLQKLKLVIGGLRTT CCCCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA