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The map label for this gene is smpB

Identifier: 78356135

GI number: 78356135

Start: 1118952

End: 1119419

Strand: Reverse

Name: smpB

Synonym: Dde_1088

Alternate gene names: 78356135

Gene position: 1119419-1118952 (Counterclockwise)

Preceding gene: 78356136

Following gene: 78356134

Centisome position: 30.01

GC content: 53.21

Gene sequence:

>468_bases
ATGACGAAAAAAAAATCATCGGGCGGCGCTCTCATTGCCCAGAATAAAAAAGCGCGCCATCTTTACGAGCTGCTCGAATT
TTTCGAGGCAGGCATTGCGCTGGCAGGCACGGAAGTTAAAAGCCTTCGTGCCGGACAGGTTTCGTTCACTGACAGTTATG
TCACCATTCACAACAACGAGGCGTGGATAGTGGGCATGCACATAGCGCCCTACGCCAATGCGGGCTATGTGCAGCATGAC
CCCGACCGTGACCGCAAACTGCTGCTGCACGCGCGCGAAATAGACACGCTGCGCGCCCGTGTGGAACAAAAAGGCCTGAC
AGTGGTACCCGTGAAGCTGTATTTTAAAAATTCACGCGTAAAGCTGGAAATTGCCGTGGGACGCGGCAAAAAGCTGCACG
ACAAACGTCAGGACATCAAACAGCGTGACGTGGAACGCGAAACCCGCAGAGAAATCATGCGTCATTGA

Upstream 100 bases:

>100_bases
CAAAGACACAATATTCAAACAGTTTCCGGAAGAGCTCACCTTCTATTCGTCACTTATCGATCATGACGACTAACGGAAAT
TGCAGATACCGGAACACACT

Downstream 100 bases:

>100_bases
TACCGCAGGAAACACCGCGCGTCAGGTGCGGTGTTTCCTTTTTTCCGCGCCGGTGCAGCCACCGGCGTAACCTCTTGCCG
CCCCATGCCAGCCTGCGCGC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MTKKKSSGGALIAQNKKARHLYELLEFFEAGIALAGTEVKSLRAGQVSFTDSYVTIHNNEAWIVGMHIAPYANAGYVQHD
PDRDRKLLLHAREIDTLRARVEQKGLTVVPVKLYFKNSRVKLEIAVGRGKKLHDKRQDIKQRDVERETRREIMRH

Sequences:

>Translated_155_residues
MTKKKSSGGALIAQNKKARHLYELLEFFEAGIALAGTEVKSLRAGQVSFTDSYVTIHNNEAWIVGMHIAPYANAGYVQHD
PDRDRKLLLHAREIDTLRARVEQKGLTVVPVKLYFKNSRVKLEIAVGRGKKLHDKRQDIKQRDVERETRREIMRH
>Mature_154_residues
TKKKSSGGALIAQNKKARHLYELLEFFEAGIALAGTEVKSLRAGQVSFTDSYVTIHNNEAWIVGMHIAPYANAGYVQHDP
DRDRKLLLHAREIDTLRARVEQKGLTVVPVKLYFKNSRVKLEIAVGRGKKLHDKRQDIKQRDVERETRREIMRH

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=158, Percent_Identity=51.8987341772152, Blast_Score=149, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_DESDG (Q313K7)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_387584.1
- ProteinModelPortal:   Q313K7
- SMR:   Q313K7
- STRING:   Q313K7
- GeneID:   3755437
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_1088
- NMPDR:   fig|207559.3.peg.917
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   DDES207559:DDE_1088-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17788; Mature: 17657

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKKSSGGALIAQNKKARHLYELLEFFEAGIALAGTEVKSLRAGQVSFTDSYVTIHNNE
CCCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEECCHHHHHCCCEEEECCCEEEEECCC
AWIVGMHIAPYANAGYVQHDPDRDRKLLLHAREIDTLRARVEQKGLTVVPVKLYFKNSRV
EEEEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEEEEECCEE
KLEIAVGRGKKLHDKRQDIKQRDVERETRREIMRH
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKKKSSGGALIAQNKKARHLYELLEFFEAGIALAGTEVKSLRAGQVSFTDSYVTIHNNE
CCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEECCHHHHHCCCEEEECCCEEEEECCC
AWIVGMHIAPYANAGYVQHDPDRDRKLLLHAREIDTLRARVEQKGLTVVPVKLYFKNSRV
EEEEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEEEEECCEE
KLEIAVGRGKKLHDKRQDIKQRDVERETRREIMRH
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA