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The map label for this gene is ydaM [H]

Identifier: 78356116

GI number: 78356116

Start: 1094328

End: 1095587

Strand: Direct

Name: ydaM [H]

Synonym: Dde_1069

Alternate gene names: 78356116

Gene position: 1094328-1095587 (Clockwise)

Preceding gene: 78356115

Following gene: 78356118

Centisome position: 29.34

GC content: 57.46

Gene sequence:

>1260_bases
GTGACTGACAATAATCAAGACCTTGTACAAGAGCACGAAGGGCTGGCAGGGCTGCCTGTTGAGCAGCCGCCTCCGCCGTC
GTTCATACGCATCTTCTGGCTGCCCGTAATATTGTATGCCGGATTTGTGCTTCTTTTTGTTTATTGGGCCGGTGCCGAAG
CGGAAAAAGAAGCTCTTGCCGACCTTGATGCCCGTCTGCGGGTGGCGGCCGTGGCGTTGCCGGGCATGCTTGCCTCAGAT
TTTCATGACCGGGCCATAGCCCCAGGTTCTGTGGGGATTGATGAAGAGCTGAAGAACCGCGAGCGCTTTAACAGGTATGC
CGCGGAAGCAGGGATGATATACGTCTACACGCTTGTCCAGTTCCGCGACGGGTTCTGTTTTTCGTCGCCCACTGTGACAG
TGGAAGAAGCGCAGGAACGCCGTTCGTGGTTTTTCTACCCGTACGAAAATCCGCCTCCGGCGTTTATGAAAGCCCTGCAG
ACCAACACGGCGCAGTATGTTTCGTATGCCGACGAATGGGGCCGCTTCCGCTCTGTTGCGGTGCCTATGACGTCTCCTTC
GGGACGGCGGTACCTTGCCTGTGCCGATATCCAGCTGCAAGAGGTGCACGAGGAAATCCGCCAGCGGCAGCAGTTCGCTT
TGCTGGCGTCGCTCGGCTTCATGCTGCTGGGAGTGCCTTTTCTGCTTGCCGGGCGGCAGGCTGTGGCAATCTATGCCCGG
TATTCGTTGGGAATTCTGAGCAGAAATATGAAACTGAAGCGTCTGGCGGATCATGACAGCCTGACAGGACTGCTTAACAG
AGTGTCTTTTTTCCGTGTGGTGGATCAGCGTATTCTTATGATGCGTCAGGTCGGCGCGCAGGGGGCGCTGCTGATGATAG
ATATTGATGACTTCAAGGAGATCAACAGCAGGCACGGGCATCTTTTCGGTGATGAGGTGCTGCTGGGAGTCAGCCATATC
TTGCGTCAGACCGCCCGCAAACAGGATACTGCGGGGCGGTACGGCGGCGAGGAGCTTATGCTGTTTCTGCCCGATGCCAG
CGCGGATGCCGCCCGTTCTGTGGCGGAGAGGCTGTGCGCACAGGTGGGCGAGATGCCGTTTACATTTCAGGGACGCACCA
TCCGGTGCACCGTCAGCATAGGTGTGGCGCATTTTACCGCGCCTTCCGATATGGCCATGGGCTATGCAGAAGTGGCGGAC
AATGCCCTGCGGCAGGCCAAACGGCATGGAAAAAACAACGTTGTGGTGCTCGGGGCCTGA

Upstream 100 bases:

>100_bases
GGCACCCTGATGCGGTTTTGTGTGCGCCCGGCATGCTGCTGATGTATTGTCTGACATGCTGCCGGTCAGATACCGCGGTT
ACCCTTGGGGAATGTAAACT

Downstream 100 bases:

>100_bases
TGTCCGCAAGTGCCGTATGTCTCCCCCCGCACGGCGTATGTTGCCGTGCGGGGCTTTTTTAATGCCGCACTGTCAGACTA
CGACTGCGTAAGCTTGTTCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTDNNQDLVQEHEGLAGLPVEQPPPPSFIRIFWLPVILYAGFVLLFVYWAGAEAEKEALADLDARLRVAAVALPGMLASD
FHDRAIAPGSVGIDEELKNRERFNRYAAEAGMIYVYTLVQFRDGFCFSSPTVTVEEAQERRSWFFYPYENPPPAFMKALQ
TNTAQYVSYADEWGRFRSVAVPMTSPSGRRYLACADIQLQEVHEEIRQRQQFALLASLGFMLLGVPFLLAGRQAVAIYAR
YSLGILSRNMKLKRLADHDSLTGLLNRVSFFRVVDQRILMMRQVGAQGALLMIDIDDFKEINSRHGHLFGDEVLLGVSHI
LRQTARKQDTAGRYGGEELMLFLPDASADAARSVAERLCAQVGEMPFTFQGRTIRCTVSIGVAHFTAPSDMAMGYAEVAD
NALRQAKRHGKNNVVVLGA

Sequences:

>Translated_419_residues
MTDNNQDLVQEHEGLAGLPVEQPPPPSFIRIFWLPVILYAGFVLLFVYWAGAEAEKEALADLDARLRVAAVALPGMLASD
FHDRAIAPGSVGIDEELKNRERFNRYAAEAGMIYVYTLVQFRDGFCFSSPTVTVEEAQERRSWFFYPYENPPPAFMKALQ
TNTAQYVSYADEWGRFRSVAVPMTSPSGRRYLACADIQLQEVHEEIRQRQQFALLASLGFMLLGVPFLLAGRQAVAIYAR
YSLGILSRNMKLKRLADHDSLTGLLNRVSFFRVVDQRILMMRQVGAQGALLMIDIDDFKEINSRHGHLFGDEVLLGVSHI
LRQTARKQDTAGRYGGEELMLFLPDASADAARSVAERLCAQVGEMPFTFQGRTIRCTVSIGVAHFTAPSDMAMGYAEVAD
NALRQAKRHGKNNVVVLGA
>Mature_418_residues
TDNNQDLVQEHEGLAGLPVEQPPPPSFIRIFWLPVILYAGFVLLFVYWAGAEAEKEALADLDARLRVAAVALPGMLASDF
HDRAIAPGSVGIDEELKNRERFNRYAAEAGMIYVYTLVQFRDGFCFSSPTVTVEEAQERRSWFFYPYENPPPAFMKALQT
NTAQYVSYADEWGRFRSVAVPMTSPSGRRYLACADIQLQEVHEEIRQRQQFALLASLGFMLLGVPFLLAGRQAVAIYARY
SLGILSRNMKLKRLADHDSLTGLLNRVSFFRVVDQRILMMRQVGAQGALLMIDIDDFKEINSRHGHLFGDEVLLGVSHIL
RQTARKQDTAGRYGGEELMLFLPDASADAARSVAERLCAQVGEMPFTFQGRTIRCTVSIGVAHFTAPSDMAMGYAEVADN
ALRQAKRHGKNNVVVLGA

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=38.7878787878788, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=202, Percent_Identity=34.1584158415842, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=32.5581395348837, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=34.7305389221557, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082007, Length=205, Percent_Identity=31.7073170731707, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=33.7209302325581, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=29.7619047619048, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787802, Length=200, Percent_Identity=29, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=32.5966850828729, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=27.5449101796407, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787816, Length=192, Percent_Identity=31.25, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081974, Length=100, Percent_Identity=34, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46777; Mature: 46646

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNNQDLVQEHEGLAGLPVEQPPPPSFIRIFWLPVILYAGFVLLFVYWAGAEAEKEALA
CCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
DLDARLRVAAVALPGMLASDFHDRAIAPGSVGIDEELKNRERFNRYAAEAGMIYVYTLVQ
HHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEHHH
FRDGFCFSSPTVTVEEAQERRSWFFYPYENPPPAFMKALQTNTAQYVSYADEWGRFRSVA
HHCCCEECCCCEEHHHHHHHCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEE
VPMTSPSGRRYLACADIQLQEVHEEIRQRQQFALLASLGFMLLGVPFLLAGRQAVAIYAR
EECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEH
YSLGILSRNMKLKRLADHDSLTGLLNRVSFFRVVDQRILMMRQVGAQGALLMIDIDDFKE
HHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH
INSRHGHLFGDEVLLGVSHILRQTARKQDTAGRYGGEELMLFLPDASADAARSVAERLCA
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
QVGEMPFTFQGRTIRCTVSIGVAHFTAPSDMAMGYAEVADNALRQAKRHGKNNVVVLGA
HHCCCCEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
TDNNQDLVQEHEGLAGLPVEQPPPPSFIRIFWLPVILYAGFVLLFVYWAGAEAEKEALA
CCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
DLDARLRVAAVALPGMLASDFHDRAIAPGSVGIDEELKNRERFNRYAAEAGMIYVYTLVQ
HHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEHHH
FRDGFCFSSPTVTVEEAQERRSWFFYPYENPPPAFMKALQTNTAQYVSYADEWGRFRSVA
HHCCCEECCCCEEHHHHHHHCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCEEEE
VPMTSPSGRRYLACADIQLQEVHEEIRQRQQFALLASLGFMLLGVPFLLAGRQAVAIYAR
EECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEH
YSLGILSRNMKLKRLADHDSLTGLLNRVSFFRVVDQRILMMRQVGAQGALLMIDIDDFKE
HHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH
INSRHGHLFGDEVLLGVSHILRQTARKQDTAGRYGGEELMLFLPDASADAARSVAERLCA
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
QVGEMPFTFQGRTIRCTVSIGVAHFTAPSDMAMGYAEVADNALRQAKRHGKNNVVVLGA
HHCCCCEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]