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The map label for this gene is rssA [H]

Identifier: 78356010

GI number: 78356010

Start: 987656

End: 988663

Strand: Direct

Name: rssA [H]

Synonym: Dde_0963

Alternate gene names: 78356010

Gene position: 987656-988663 (Clockwise)

Preceding gene: 78356009

Following gene: 78356012

Centisome position: 26.48

GC content: 53.87

Gene sequence:

>1008_bases
ATGTCGGACGATAGCTCAGGTTTTCCGAAAAATATCGGCCTGGCTCTGGGTAGCGGCTCCGCACGGGGATGGTCTCATAT
CGGTGTATTGCAGGCACTAGCTGAGGCAGGAATAGAAATCAGGTACGTCGCCGGCACCAGCATTGGTTCGTTGGTAGGGG
CCGCATGTGCCCTTGGCAAAATGGATGTGCTGGAAAATTTTGCCCGTCAGCTCGACTGGAAACAGATTGTTTCCTTCCTG
GATGTAACTTTTCCGAGGTCGGGACTCATTGATGGAAAGAAGATCAGCGATTTCTTTCGTTCTCATGTTCGAGAAATGAA
CATTGAAGAATTACCTCTCCGCTATTGCGCGGTTGCCACCGACCTGGCCACGGGTCGTGAGGTCGTGTTGAACAAAGGGG
ACCTCATAGAGGCAATCCGCGCGAGCATCTCGGTTCCGGGCATTTTCACGCCGGTCAGGAAAAACGGCGGCTTTCTGGTG
GATGGAGGGCTGGTCAACCCCGTGCCGGTGAGCGCTGTCAGGAAAATGGGAGCGGATTACGTCATCGCTGTTGATTTGAA
CCATGACATTATCGACAAAAGGAGTACCGCCGGCATCGCTCCGGTTGATTCATCGGTGGCAGGTATGGTTGTTCAGCCCC
AGCCCGCAGAATGGAGAATCGCGCAGGATCTGACCAACAGGCTCAGCGAATTCGGTTCGCCCGCGTTATCGCAAGTGCGC
CAGTGGCTGCAAAGGGACCCCGTGCCAAATATCTTTGATGTGTTGACGACTGCAATCAATATTATGGAAGTGCAGATCAC
CGCAACAAGATTGGCAACCGATCCGCCCGATCTGCTGATTCGGCCGAAGCTGGGGGATGTTCGTTTTCTCGAATTCCATC
GGGCCGAGGAGGCCATTGCCGAGGGGTACCGAGAAGCCATGGTGCAGCTCAAAGAAAGATGGAAGTGTGCCGCCAAAAGA
GATTTGCCAGGAGGTTTTTTACCGGGGAGGACGGAAGATGGGAATTAA

Upstream 100 bases:

>100_bases
CGTTTACAGTCAGGCATGGAGGTAAGCGTGCAAGATATTTTGAACAAGAATGGGACGGATAACTCTGGGGGACAACTTTT
CAAGAAGAACGGCGGTGAAC

Downstream 100 bases:

>100_bases
TATTTGTCAGTTACAAGAAAAACGCCTCGTTGATCGTCTGCGTTCTCTGAGGGTCAAAGGAGAAGTGATCGAGAAAAAAA
GAATGGAATCATTCAGTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSDDSSGFPKNIGLALGSGSARGWSHIGVLQALAEAGIEIRYVAGTSIGSLVGAACALGKMDVLENFARQLDWKQIVSFL
DVTFPRSGLIDGKKISDFFRSHVREMNIEELPLRYCAVATDLATGREVVLNKGDLIEAIRASISVPGIFTPVRKNGGFLV
DGGLVNPVPVSAVRKMGADYVIAVDLNHDIIDKRSTAGIAPVDSSVAGMVVQPQPAEWRIAQDLTNRLSEFGSPALSQVR
QWLQRDPVPNIFDVLTTAINIMEVQITATRLATDPPDLLIRPKLGDVRFLEFHRAEEAIAEGYREAMVQLKERWKCAAKR
DLPGGFLPGRTEDGN

Sequences:

>Translated_335_residues
MSDDSSGFPKNIGLALGSGSARGWSHIGVLQALAEAGIEIRYVAGTSIGSLVGAACALGKMDVLENFARQLDWKQIVSFL
DVTFPRSGLIDGKKISDFFRSHVREMNIEELPLRYCAVATDLATGREVVLNKGDLIEAIRASISVPGIFTPVRKNGGFLV
DGGLVNPVPVSAVRKMGADYVIAVDLNHDIIDKRSTAGIAPVDSSVAGMVVQPQPAEWRIAQDLTNRLSEFGSPALSQVR
QWLQRDPVPNIFDVLTTAINIMEVQITATRLATDPPDLLIRPKLGDVRFLEFHRAEEAIAEGYREAMVQLKERWKCAAKR
DLPGGFLPGRTEDGN
>Mature_334_residues
SDDSSGFPKNIGLALGSGSARGWSHIGVLQALAEAGIEIRYVAGTSIGSLVGAACALGKMDVLENFARQLDWKQIVSFLD
VTFPRSGLIDGKKISDFFRSHVREMNIEELPLRYCAVATDLATGREVVLNKGDLIEAIRASISVPGIFTPVRKNGGFLVD
GGLVNPVPVSAVRKMGADYVIAVDLNHDIIDKRSTAGIAPVDSSVAGMVVQPQPAEWRIAQDLTNRLSEFGSPALSQVRQ
WLQRDPVPNIFDVLTTAINIMEVQITATRLATDPPDLLIRPKLGDVRFLEFHRAEEAIAEGYREAMVQLKERWKCAAKRD
LPGGFLPGRTEDGN

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=195, Percent_Identity=36.4102564102564, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI260656041, Length=195, Percent_Identity=36.4102564102564, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI116256487, Length=195, Percent_Identity=36.4102564102564, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI260656043, Length=195, Percent_Identity=36.4102564102564, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI260656037, Length=195, Percent_Identity=36.4102564102564, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI148727335, Length=182, Percent_Identity=36.2637362637363, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI148727290, Length=182, Percent_Identity=36.2637362637363, Blast_Score=106, Evalue=2e-23,
Organism=Escherichia coli, GI226510936, Length=293, Percent_Identity=41.6382252559727, Blast_Score=219, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI71997289, Length=213, Percent_Identity=32.8638497652582, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71997299, Length=213, Percent_Identity=32.8638497652582, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193204778, Length=166, Percent_Identity=29.5180722891566, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6323581, Length=180, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=4e-22,
Organism=Drosophila melanogaster, GI281376913, Length=183, Percent_Identity=33.879781420765, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI28571388, Length=183, Percent_Identity=33.879781420765, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 36389; Mature: 36258

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDSSGFPKNIGLALGSGSARGWSHIGVLQALAEAGIEIRYVAGTSIGSLVGAACALGK
CCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
MDVLENFARQLDWKQIVSFLDVTFPRSGLIDGKKISDFFRSHVREMNIEELPLRYCAVAT
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCHHHHHHHH
DLATGREVVLNKGDLIEAIRASISVPGIFTPVRKNGGFLVDGGLVNPVPVSAVRKMGADY
HHCCCCCEEECCCHHHHHHHHHCCCCCCCCCEECCCCEEEECCCCCCCCHHHHHHCCCCE
VIAVDLNHDIIDKRSTAGIAPVDSSVAGMVVQPQPAEWRIAQDLTNRLSEFGSPALSQVR
EEEEECCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHH
QWLQRDPVPNIFDVLTTAINIMEVQITATRLATDPPDLLIRPKLGDVRFLEFHRAEEAIA
HHHHHCCCCHHHHHHHHHHHHHEEEEEEHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH
EGYREAMVQLKERWKCAAKRDLPGGFLPGRTEDGN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDDSSGFPKNIGLALGSGSARGWSHIGVLQALAEAGIEIRYVAGTSIGSLVGAACALGK
CCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
MDVLENFARQLDWKQIVSFLDVTFPRSGLIDGKKISDFFRSHVREMNIEELPLRYCAVAT
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCHHHHHHHH
DLATGREVVLNKGDLIEAIRASISVPGIFTPVRKNGGFLVDGGLVNPVPVSAVRKMGADY
HHCCCCCEEECCCHHHHHHHHHCCCCCCCCCEECCCCEEEECCCCCCCCHHHHHHCCCCE
VIAVDLNHDIIDKRSTAGIAPVDSSVAGMVVQPQPAEWRIAQDLTNRLSEFGSPALSQVR
EEEEECCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHH
QWLQRDPVPNIFDVLTTAINIMEVQITATRLATDPPDLLIRPKLGDVRFLEFHRAEEAIA
HHHHHCCCCHHHHHHHHHHHHHEEEEEEHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH
EGYREAMVQLKERWKCAAKRDLPGGFLPGRTEDGN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]