| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is hphIBM [H]
Identifier: 78355969
GI number: 78355969
Start: 950735
End: 953131
Strand: Direct
Name: hphIBM [H]
Synonym: Dde_0922
Alternate gene names: 78355969
Gene position: 950735-953131 (Clockwise)
Preceding gene: 78355968
Following gene: 78355970
Centisome position: 25.49
GC content: 62.16
Gene sequence:
>2397_bases ATGGAACTGTTCGCCACAGACCTGGAAAGGCTGGCGTTTCTACTGGAGGCCGATGCGGCGCTGACTCTCGATCCCGATGC GCTCGGGACCGAGGCCGCCGAACAGTCCGCTCCTGAAGAGCTCCCTCCCGAGAAGCGCCCCAAGTACATCACCAACTACA TCGGCAGTAAGCAGAAGCTCGTCGACTGGATCTGGAAGCATACCCCGGAAGGCGTTGGCACCGTGCTCGACGCCTTTTCG GGGTCTGCGGTCGTGGCCTACATGTACAAGACCAAGGGCCTCCAGGTCATCGCCAACGACCGGCTCCGCTACTGCCACCA CGCCGCCAAGGCGATCATCGAGAACAACTCGGTTCGCCTGAGCGAGGACGAGATCGAGGCGCTCCTGGCCGACAACGCCA AGGCGGGCAGCTTCGTTCAGGACAACTTCAAGGGCATTTTCTTCGCCAAGGGCGTCCATGCGCTGATCGACACCATCCGC GCCAACTGCGACAAGCTCTCCGGCTTCAAGAAAGACATCGCCCTGTTCGGCCTCGGCAAGACCTGCATGAGCGGCAAGGG CGGCTTCGGCCACTTCTCGTCGTCCACCGACTATGGCCGCCGCCAGGACACCCCAGACGAATTCAAGGATCGTCTGCGCA AGAACCTGCAGCGCATCAACGCCCTGGTCTTCGACAACGACAAGGAGAACAAGGCCCACCGGCAGGACATCAACGACCTG CTGCCGAAAGCCAAGGCGGATCTGGCCTACTTCGATCCGCCCTACGCCACCGAGTTTTCGACTACCAACTACGAGCGGGC CTACCACTTCGTGGAAGGGCTCATGACCTATTGGGAAGGGCTCGAAATCAAGGCCGACACCAAGGTCAAGTATTACGAGA CCGACCACAAGACCGTCACCAAGGCCAACGCCAGCGAGTTCTTCCAGACCTTTCTCGGCAATGCCAAGCACATTCCGCAC TGGCTGATTTCCTACCGCGATCACGCCTATCCCAACGAGCAGGAGATGAAGCGGATCATCGGCTCCTTCGGCAAACAGAG CCGGATGAAGTCCAAGGATCACCACTACGCCATCACCTCCAAGCACGGCGAGGCTTCCAACGCCAAAGAACGTCTGTTCG TCTGCGCTCCCGGGGCCAAGGCCAGCGCCGAACGGGAGGAGAAACCCGTTCCGATGGCCGCCGCCGCGAACTTCCACACC AGCATCCCCGTGGACATCCGGCTGGGCGATGGTGAACGCCTCGCGACCGAGGCCATGGATGTCGGTTCGGCGGGCGACCC CCAGTTCAGCTTCGTGCTCTGCCGAACCGGGACCAACAAGAACGGCGACCACTTCACCGCCGAGGAGTTGTCCGGTCGGC ACATGACGGCCGTGAACAAGAAGGTCGATCTGCAGCATTCGCAGGAGTTCAACGACATCGTGGGTGGCATCGTCGCCGCC GACTACCTGGAGGACGACAACGGCGGCCGCGTGGAATGCGTCGGCGAGCTGTATGTCCACGACACCCCGGCCGCCCGGCT GGCCTACAAGCTGATGAAGCGCGGGATCATCTCCCAGGTCTCCATGGAGTGCGACTACCAGGAAGGCGAATGCTCGGTCT GCCACAAGCGCTTCCAGAACAAGGCCGACTACTGCACCCACCTGCGCAAATTCAAGGGCCGTGATGTGGGCGGCCAACCC GTTTTCGAGATTCTGCACGGCGTCACTTTCACCGGACTGGGACTGCTCGACCGCAAAGGCGCGGACGAGAACGCCAGGAT TCTGCAGGTGGCGTCCCTTCAGAGCCAGCCCGACCAATCCCAACCCGAAGGAGATTCCACGATGGAAGACAAAACCAAAC CTACAGATGAACCGGCCGTCGAAGCGGCCAAGAAGAAACCGGCCCAGCAGGAAGGCGATCCTGCCCGCGTTACCGACCTG GAAAAGGAAAACCGGCAGCTCAAGGCCCAGGTGGCCGAGCTGCAGAAACGAGTCCAGGAACTGGAAGCCGAACAAAAGGC GGCCGCCTGCCGCTCCCGGGCCAAGAAGCTGCTCACCCGTCTGGAGAAGCAGGGGCTCTCCTTCGCTTCCGAGGAGGACC GGGAAGCCGAGCTGAAACGCCTGGCCGAACTGTCCGACGAAGCCTTCGCCGCCACCGAGGCCGCTTACGAACGCCTGCCC AAATCGGCCAAGGCGGACAAGGACAAGGAAGAGAAACCCGCCGACAGCGACCAGGGCGGCAAGCCCGCCGCCAAGGCATC GACGGAAACCCCGCTACGCAGCGACGCCGGTGTCCGGCCCCACGATGTGGACGACCGCAAGGTGTCGCTCGAGGACCGTC TGCGCGACGGGTTCATGGCCGCTTACCGCAACCGTGTCGGCGAGGACTTTCCCGAACACTCGCAAATCAACGCATAA
Upstream 100 bases:
>100_bases TCTCCGTCACCCTCCGACACATCAACGACGCTTCCGGTAAGTAACCGCTGAACGCTCCCCGCAGGTCGCGGAGAGCACAG CAAACTGACCGGAGACGTTG
Downstream 100 bases:
>100_bases GGAGGAAACACCATGTCATTCATCAATCCGTGTCACCGCAGCCTCGCCTATGGCGACGGCCACATCCAGGGCGACGGCCA ACTCGGCCAGGTGGTCCGCG
Product: adenine-specific DNA methylase-like protein
Products: NA
Alternate protein names: M.HphIB; Adenine-specific methyltransferase HphIB; M.HphI(A) [H]
Number of amino acids: Translated: 798; Mature: 798
Protein sequence:
>798_residues MELFATDLERLAFLLEADAALTLDPDALGTEAAEQSAPEELPPEKRPKYITNYIGSKQKLVDWIWKHTPEGVGTVLDAFS GSAVVAYMYKTKGLQVIANDRLRYCHHAAKAIIENNSVRLSEDEIEALLADNAKAGSFVQDNFKGIFFAKGVHALIDTIR ANCDKLSGFKKDIALFGLGKTCMSGKGGFGHFSSSTDYGRRQDTPDEFKDRLRKNLQRINALVFDNDKENKAHRQDINDL LPKAKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWEGLEIKADTKVKYYETDHKTVTKANASEFFQTFLGNAKHIPH WLISYRDHAYPNEQEMKRIIGSFGKQSRMKSKDHHYAITSKHGEASNAKERLFVCAPGAKASAEREEKPVPMAAAANFHT SIPVDIRLGDGERLATEAMDVGSAGDPQFSFVLCRTGTNKNGDHFTAEELSGRHMTAVNKKVDLQHSQEFNDIVGGIVAA DYLEDDNGGRVECVGELYVHDTPAARLAYKLMKRGIISQVSMECDYQEGECSVCHKRFQNKADYCTHLRKFKGRDVGGQP VFEILHGVTFTGLGLLDRKGADENARILQVASLQSQPDQSQPEGDSTMEDKTKPTDEPAVEAAKKKPAQQEGDPARVTDL EKENRQLKAQVAELQKRVQELEAEQKAAACRSRAKKLLTRLEKQGLSFASEEDREAELKRLAELSDEAFAATEAAYERLP KSAKADKDKEEKPADSDQGGKPAAKASTETPLRSDAGVRPHDVDDRKVSLEDRLRDGFMAAYRNRVGEDFPEHSQINA
Sequences:
>Translated_798_residues MELFATDLERLAFLLEADAALTLDPDALGTEAAEQSAPEELPPEKRPKYITNYIGSKQKLVDWIWKHTPEGVGTVLDAFS GSAVVAYMYKTKGLQVIANDRLRYCHHAAKAIIENNSVRLSEDEIEALLADNAKAGSFVQDNFKGIFFAKGVHALIDTIR ANCDKLSGFKKDIALFGLGKTCMSGKGGFGHFSSSTDYGRRQDTPDEFKDRLRKNLQRINALVFDNDKENKAHRQDINDL LPKAKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWEGLEIKADTKVKYYETDHKTVTKANASEFFQTFLGNAKHIPH WLISYRDHAYPNEQEMKRIIGSFGKQSRMKSKDHHYAITSKHGEASNAKERLFVCAPGAKASAEREEKPVPMAAAANFHT SIPVDIRLGDGERLATEAMDVGSAGDPQFSFVLCRTGTNKNGDHFTAEELSGRHMTAVNKKVDLQHSQEFNDIVGGIVAA DYLEDDNGGRVECVGELYVHDTPAARLAYKLMKRGIISQVSMECDYQEGECSVCHKRFQNKADYCTHLRKFKGRDVGGQP VFEILHGVTFTGLGLLDRKGADENARILQVASLQSQPDQSQPEGDSTMEDKTKPTDEPAVEAAKKKPAQQEGDPARVTDL EKENRQLKAQVAELQKRVQELEAEQKAAACRSRAKKLLTRLEKQGLSFASEEDREAELKRLAELSDEAFAATEAAYERLP KSAKADKDKEEKPADSDQGGKPAAKASTETPLRSDAGVRPHDVDDRKVSLEDRLRDGFMAAYRNRVGEDFPEHSQINA >Mature_798_residues MELFATDLERLAFLLEADAALTLDPDALGTEAAEQSAPEELPPEKRPKYITNYIGSKQKLVDWIWKHTPEGVGTVLDAFS GSAVVAYMYKTKGLQVIANDRLRYCHHAAKAIIENNSVRLSEDEIEALLADNAKAGSFVQDNFKGIFFAKGVHALIDTIR ANCDKLSGFKKDIALFGLGKTCMSGKGGFGHFSSSTDYGRRQDTPDEFKDRLRKNLQRINALVFDNDKENKAHRQDINDL LPKAKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWEGLEIKADTKVKYYETDHKTVTKANASEFFQTFLGNAKHIPH WLISYRDHAYPNEQEMKRIIGSFGKQSRMKSKDHHYAITSKHGEASNAKERLFVCAPGAKASAEREEKPVPMAAAANFHT SIPVDIRLGDGERLATEAMDVGSAGDPQFSFVLCRTGTNKNGDHFTAEELSGRHMTAVNKKVDLQHSQEFNDIVGGIVAA DYLEDDNGGRVECVGELYVHDTPAARLAYKLMKRGIISQVSMECDYQEGECSVCHKRFQNKADYCTHLRKFKGRDVGGQP VFEILHGVTFTGLGLLDRKGADENARILQVASLQSQPDQSQPEGDSTMEDKTKPTDEPAVEAAKKKPAQQEGDPARVTDL EKENRQLKAQVAELQKRVQELEAEQKAAACRSRAKKLLTRLEKQGLSFASEEDREAELKRLAELSDEAFAATEAAYERLP KSAKADKDKEEKPADSDQGGKPAAKASTETPLRSDAGVRPHDVDDRKVSLEDRLRDGFMAAYRNRVGEDFPEHSQINA
Specific function: This methylase protects the DNA from cleavage by the HphI endonuclease [H]
COG id: COG3392
COG function: function code L; Adenine-specific DNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR012327 [H]
Pfam domain/function: PF02086 MethyltransfD12 [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 88875; Mature: 88875
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELFATDLERLAFLLEADAALTLDPDALGTEAAEQSAPEELPPEKRPKYITNYIGSKQKL CCCHHHHHHHHHHHHHCCCEEEECCHHHCCHHHHHCCCCCCCCCCCCHHHHHHHCCHHHH VDWIWKHTPEGVGTVLDAFSGSAVVAYMYKTKGLQVIANDRLRYCHHAAKAIIENNSVRL HHHHHHCCCCHHHHHHHHCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHHHCCCCEEE SEDEIEALLADNAKAGSFVQDNFKGIFFAKGVHALIDTIRANCDKLSGFKKDIALFGLGK CHHHHHHHHHCCCCCCCHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCH TCMSGKGGFGHFSSSTDYGRRQDTPDEFKDRLRKNLQRINALVFDNDKENKAHRQDINDL HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHH LPKAKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWEGLEIKADTKVKYYETDHKTVT CCHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCHHH KANASEFFQTFLGNAKHIPHWLISYRDHAYPNEQEMKRIIGSFGKQSRMKSKDHHYAITS HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCHHHHCCCCCCCEEEEC KHGEASNAKERLFVCAPGAKASAEREEKPVPMAAAANFHTSIPVDIRLGDGERLATEAMD CCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEEHHCCCCCCCCEEEEECCCCHHHHHHHH VGSAGDPQFSFVLCRTGTNKNGDHFTAEELSGRHMTAVNKKVDLQHSQEFNDIVGGIVAA CCCCCCCCEEEEEEECCCCCCCCCEEHHHHCCCEEEHHCCHHCCHHHHHHHHHHHHHHHH DYLEDDNGGRVECVGELYVHDTPAARLAYKLMKRGIISQVSMECDYQEGECSVCHKRFQN HHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC KADYCTHLRKFKGRDVGGQPVFEILHGVTFTGLGLLDRKGADENARILQVASLQSQPDQS HHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHCCCHHHCCCCCCCCCEEEEHHHCCCCCCC QPEGDSTMEDKTKPTDEPAVEAAKKKPAQQEGDPARVTDLEKENRQLKAQVAELQKRVQE CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHH LEAEQKAAACRSRAKKLLTRLEKQGLSFASEEDREAELKRLAELSDEAFAATEAAYERLP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC KSAKADKDKEEKPADSDQGGKPAAKASTETPLRSDAGVRPHDVDDRKVSLEDRLRDGFMA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHH AYRNRVGEDFPEHSQINA HHHHHHCCCCCCCCCCCC >Mature Secondary Structure MELFATDLERLAFLLEADAALTLDPDALGTEAAEQSAPEELPPEKRPKYITNYIGSKQKL CCCHHHHHHHHHHHHHCCCEEEECCHHHCCHHHHHCCCCCCCCCCCCHHHHHHHCCHHHH VDWIWKHTPEGVGTVLDAFSGSAVVAYMYKTKGLQVIANDRLRYCHHAAKAIIENNSVRL HHHHHHCCCCHHHHHHHHCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHHHCCCCEEE SEDEIEALLADNAKAGSFVQDNFKGIFFAKGVHALIDTIRANCDKLSGFKKDIALFGLGK CHHHHHHHHHCCCCCCCHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCH TCMSGKGGFGHFSSSTDYGRRQDTPDEFKDRLRKNLQRINALVFDNDKENKAHRQDINDL HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHH LPKAKADLAYFDPPYATEFSTTNYERAYHFVEGLMTYWEGLEIKADTKVKYYETDHKTVT CCHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCHHH KANASEFFQTFLGNAKHIPHWLISYRDHAYPNEQEMKRIIGSFGKQSRMKSKDHHYAITS HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCHHHHCCCCCCCEEEEC KHGEASNAKERLFVCAPGAKASAEREEKPVPMAAAANFHTSIPVDIRLGDGERLATEAMD CCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEEHHCCCCCCCCEEEEECCCCHHHHHHHH VGSAGDPQFSFVLCRTGTNKNGDHFTAEELSGRHMTAVNKKVDLQHSQEFNDIVGGIVAA CCCCCCCCEEEEEEECCCCCCCCCEEHHHHCCCEEEHHCCHHCCHHHHHHHHHHHHHHHH DYLEDDNGGRVECVGELYVHDTPAARLAYKLMKRGIISQVSMECDYQEGECSVCHKRFQN HHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC KADYCTHLRKFKGRDVGGQPVFEILHGVTFTGLGLLDRKGADENARILQVASLQSQPDQS HHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHCCCHHHCCCCCCCCCEEEEHHHCCCCCCC QPEGDSTMEDKTKPTDEPAVEAAKKKPAQQEGDPARVTDLEKENRQLKAQVAELQKRVQE CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHH LEAEQKAAACRSRAKKLLTRLEKQGLSFASEEDREAELKRLAELSDEAFAATEAAYERLP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC KSAKADKDKEEKPADSDQGGKPAAKASTETPLRSDAGVRPHDVDDRKVSLEDRLRDGFMA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHH AYRNRVGEDFPEHSQINA HHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8759008 [H]