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The map label for this gene is yciR [C]

Identifier: 78355864

GI number: 78355864

Start: 837550

End: 839232

Strand: Reverse

Name: yciR [C]

Synonym: Dde_0817

Alternate gene names: 78355864

Gene position: 839232-837550 (Counterclockwise)

Preceding gene: 78355868

Following gene: 78355861

Centisome position: 22.5

GC content: 61.2

Gene sequence:

>1683_bases
ATGACCAGTAAGAAATCACTCCGCGTACCGGCACCGCCGGTCGCCGGCGCTCCCTCTGTCGACAGCGGCGCTCCGTGCAG
CGAAGCACTGAAGCACTTTCTCTGCGGTTCCCCTGCCGTTATTGTAACAGATAAAGGCAGCCCCTGCTGCGTGCTGCGCC
CCGCCGACATACTGGCCGCCGTGGCAGACCGCGCCGGACTGCAGACTCTGCCGGCCGGCAGTTTTTGCGGCGAAGCCGGA
CAACCGGAACTGCCTGCACAGCATGATTCCGTATCCGGCCCCGCGGCTGCTGACGCGCCTGCGGGCTGCCCCGGCGAACA
TGCCGGACTGACAGACGGCACCGCGGGGCTGCTGCTGGCCGATGTGGTGCCCGTGCTCAACATGGCATACGAACCGCTGC
ATCCCGATGAACCGCTGCTTAACGCCATGGAAGCACTTGCGGAATGTGAAAACAGTGTTGTTCTGGTACTGGACGGCAAA
GGCACGCCCGCGCTGCTGGAACGCGGCGACGTGGCGGCCCTGATGGACTGTTCGGATGATCCGTGGTCCACGCCGCTCGG
CAGCTGCGCCAGAGGCAACGTGCTTTCCCTGCCTTCCGCCACCGGCGTGCAGGCGGCCTTGAACCGGCTGGAAAATTCAC
CCTACAGCCATGTGCTGGTGACAGACGACAGACAGGAACCGGCAGGACTGATGAGCGTGAGAGAACTGCGTCATGCCGCG
GCCATACGCGACGCACAGGCAGTGCACAATCTGCTGGACTGGCAACGCATACAGCTGAATCAGGAACTGCGCGAACACTC
ACAGCGCCTTGCCCAGCTTGAAAATTATCTGTCCGCACACCTGCGCACGGGCATCATCGGTATTTCTCCGCAGGGGCGCA
TCCTTTTCTGCAGCGGACCCGCGCTGGACATTCTGCATGCCATCACCCCCGTAAACCCCACGGGAAAAGAACTGCATGTG
CTGGCCCTCAGTATCGACTTTTTCCGGAAGGTACAGCAGGCCCTTGCCGGATGCGACGCGTCTTCGCTGTGCACGTTCAG
TTACACGTTACCGCATCCGGAACAGAACATCATCCACTGCACCCTTTCTCACCTTGCAGAGAACGGACAACCGCTGGGGC
AGGCGCTCACCATGCGCGAAGCACCTGACTCCTCCGACCACCTTTCGCTGGAACAGCAGGCGTTTTACGATGCCCTGACC
GGCCTGCCCAACAGGCACCTTTTTGCGGAACGGGTTTCTCAGGAAATGCGGCGCAGCAGGCGTGACGGTCTGCGCTTTGC
ACTGGCGTTTCTCGATCTTGATAACTTTAAAGAGATTAATGACACCTACGGCCACCTGCTGGGTGACAGTCTGCTGCAGG
AGGTGGCGCGCAGGCTGCAGCGGGGTATCCGGGCTTCTGACACCGTGGCCCGGTTCGGCGGCGATGAATTTCTGGCTCTG
CTGCCGGAAACAGCTCCCGGAACGCCTACACTCAACGTGCTGGAAAAACTGCGCAACAGTCTGGACAGGCCCTTTGTACT
GGACGGGCACGAACTGACCCTGTGCTGCAGCATAGGTGTGGCGCATTACCCCGACGATGCGTCCAGTGTATCCGGGCTGA
TGAACACGGCAGACAAGAACATGTATAAAGACAAAGCCGCGCGCAGGCTTACCGGCTGCCGCCTGACATCCGACGGACAG
TGA

Upstream 100 bases:

>100_bases
CAGATCCAGGCATACCCTGTGCATAACCGCCTCCGCTGTTACAGTCCGCTTATTTTCTAATAGCGTCTTTTGCCAATTTC
ATGCCAGTAGCTGAGTAACC

Downstream 100 bases:

>100_bases
CCCGCCGTTGCCCGTCCGCATTCAGCGGGCCGGGCACTGCAGTCCGGGCACCGACCCGTTGCCGCCCAGCTGCCGTGCGG
CATGCAGGCGGGCAACGGCT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MTSKKSLRVPAPPVAGAPSVDSGAPCSEALKHFLCGSPAVIVTDKGSPCCVLRPADILAAVADRAGLQTLPAGSFCGEAG
QPELPAQHDSVSGPAAADAPAGCPGEHAGLTDGTAGLLLADVVPVLNMAYEPLHPDEPLLNAMEALAECENSVVLVLDGK
GTPALLERGDVAALMDCSDDPWSTPLGSCARGNVLSLPSATGVQAALNRLENSPYSHVLVTDDRQEPAGLMSVRELRHAA
AIRDAQAVHNLLDWQRIQLNQELREHSQRLAQLENYLSAHLRTGIIGISPQGRILFCSGPALDILHAITPVNPTGKELHV
LALSIDFFRKVQQALAGCDASSLCTFSYTLPHPEQNIIHCTLSHLAENGQPLGQALTMREAPDSSDHLSLEQQAFYDALT
GLPNRHLFAERVSQEMRRSRRDGLRFALAFLDLDNFKEINDTYGHLLGDSLLQEVARRLQRGIRASDTVARFGGDEFLAL
LPETAPGTPTLNVLEKLRNSLDRPFVLDGHELTLCCSIGVAHYPDDASSVSGLMNTADKNMYKDKAARRLTGCRLTSDGQ

Sequences:

>Translated_560_residues
MTSKKSLRVPAPPVAGAPSVDSGAPCSEALKHFLCGSPAVIVTDKGSPCCVLRPADILAAVADRAGLQTLPAGSFCGEAG
QPELPAQHDSVSGPAAADAPAGCPGEHAGLTDGTAGLLLADVVPVLNMAYEPLHPDEPLLNAMEALAECENSVVLVLDGK
GTPALLERGDVAALMDCSDDPWSTPLGSCARGNVLSLPSATGVQAALNRLENSPYSHVLVTDDRQEPAGLMSVRELRHAA
AIRDAQAVHNLLDWQRIQLNQELREHSQRLAQLENYLSAHLRTGIIGISPQGRILFCSGPALDILHAITPVNPTGKELHV
LALSIDFFRKVQQALAGCDASSLCTFSYTLPHPEQNIIHCTLSHLAENGQPLGQALTMREAPDSSDHLSLEQQAFYDALT
GLPNRHLFAERVSQEMRRSRRDGLRFALAFLDLDNFKEINDTYGHLLGDSLLQEVARRLQRGIRASDTVARFGGDEFLAL
LPETAPGTPTLNVLEKLRNSLDRPFVLDGHELTLCCSIGVAHYPDDASSVSGLMNTADKNMYKDKAARRLTGCRLTSDGQ
>Mature_559_residues
TSKKSLRVPAPPVAGAPSVDSGAPCSEALKHFLCGSPAVIVTDKGSPCCVLRPADILAAVADRAGLQTLPAGSFCGEAGQ
PELPAQHDSVSGPAAADAPAGCPGEHAGLTDGTAGLLLADVVPVLNMAYEPLHPDEPLLNAMEALAECENSVVLVLDGKG
TPALLERGDVAALMDCSDDPWSTPLGSCARGNVLSLPSATGVQAALNRLENSPYSHVLVTDDRQEPAGLMSVRELRHAAA
IRDAQAVHNLLDWQRIQLNQELREHSQRLAQLENYLSAHLRTGIIGISPQGRILFCSGPALDILHAITPVNPTGKELHVL
ALSIDFFRKVQQALAGCDASSLCTFSYTLPHPEQNIIHCTLSHLAENGQPLGQALTMREAPDSSDHLSLEQQAFYDALTG
LPNRHLFAERVSQEMRRSRRDGLRFALAFLDLDNFKEINDTYGHLLGDSLLQEVARRLQRGIRASDTVARFGGDEFLALL
PETAPGTPTLNVLEKLRNSLDRPFVLDGHELTLCCSIGVAHYPDDASSVSGLMNTADKNMYKDKAARRLTGCRLTSDGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=160, Percent_Identity=33.75, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=31.4432989690722, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=39.6341463414634, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI145693134, Length=151, Percent_Identity=35.0993377483444, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=35.5828220858896, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081881, Length=156, Percent_Identity=36.5384615384615, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=31.055900621118, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=160, Percent_Identity=33.125, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=32.2981366459627, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=32.9268292682927, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=170, Percent_Identity=35.2941176470588, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI87081974, Length=90, Percent_Identity=36.6666666666667, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=29.0123456790123, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 59890; Mature: 59759

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKKSLRVPAPPVAGAPSVDSGAPCSEALKHFLCGSPAVIVTDKGSPCCVLRPADILAA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHH
VADRAGLQTLPAGSFCGEAGQPELPAQHDSVSGPAAADAPAGCPGEHAGLTDGTAGLLLA
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
DVVPVLNMAYEPLHPDEPLLNAMEALAECENSVVLVLDGKGTPALLERGDVAALMDCSDD
HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCEEEEEECCCC
PWSTPLGSCARGNVLSLPSATGVQAALNRLENSPYSHVLVTDDRQEPAGLMSVRELRHAA
CCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
AIRDAQAVHNLLDWQRIQLNQELREHSQRLAQLENYLSAHLRTGIIGISPQGRILFCSGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEEECCC
ALDILHAITPVNPTGKELHVLALSIDFFRKVQQALAGCDASSLCTFSYTLPHPEQNIIHC
HHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHH
TLSHLAENGQPLGQALTMREAPDSSDHLSLEQQAFYDALTGLPNRHLFAERVSQEMRRSR
HHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RDGLRFALAFLDLDNFKEINDTYGHLLGDSLLQEVARRLQRGIRASDTVARFGGDEFLAL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEE
LPETAPGTPTLNVLEKLRNSLDRPFVLDGHELTLCCSIGVAHYPDDASSVSGLMNTADKN
CCCCCCCCCHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
MYKDKAARRLTGCRLTSDGQ
HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TSKKSLRVPAPPVAGAPSVDSGAPCSEALKHFLCGSPAVIVTDKGSPCCVLRPADILAA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHH
VADRAGLQTLPAGSFCGEAGQPELPAQHDSVSGPAAADAPAGCPGEHAGLTDGTAGLLLA
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
DVVPVLNMAYEPLHPDEPLLNAMEALAECENSVVLVLDGKGTPALLERGDVAALMDCSDD
HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCEEEEEECCCC
PWSTPLGSCARGNVLSLPSATGVQAALNRLENSPYSHVLVTDDRQEPAGLMSVRELRHAA
CCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
AIRDAQAVHNLLDWQRIQLNQELREHSQRLAQLENYLSAHLRTGIIGISPQGRILFCSGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEEECCC
ALDILHAITPVNPTGKELHVLALSIDFFRKVQQALAGCDASSLCTFSYTLPHPEQNIIHC
HHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHH
TLSHLAENGQPLGQALTMREAPDSSDHLSLEQQAFYDALTGLPNRHLFAERVSQEMRRSR
HHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RDGLRFALAFLDLDNFKEINDTYGHLLGDSLLQEVARRLQRGIRASDTVARFGGDEFLAL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEE
LPETAPGTPTLNVLEKLRNSLDRPFVLDGHELTLCCSIGVAHYPDDASSVSGLMNTADKN
CCCCCCCCCHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
MYKDKAARRLTGCRLTSDGQ
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]