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The map label for this gene is cbiD [H]

Identifier: 78355851

GI number: 78355851

Start: 823997

End: 825229

Strand: Reverse

Name: cbiD [H]

Synonym: Dde_0804

Alternate gene names: 78355851

Gene position: 825229-823997 (Counterclockwise)

Preceding gene: 78355854

Following gene: 78355850

Centisome position: 22.12

GC content: 63.42

Gene sequence:

>1233_bases
ATGGCGAAAGCAAAAAAACTGCGGGAAGGATTCACAACCGGCACGGCCGCTTCCGCAGCGGCAGCCGCCGCTGTAAAGCT
GCTGCTCACCGGCGGCAGCTCTCAGGCCGTTTCTGTGGCACTGCCCCCGTTCTCCGGCGATGCCCGCGGAAATATACAGC
GGCTTACCGTACCGGTATCGGCATGCAGCCGGACAGCCGCAGCACAGGCCGCAGCGCAGGTGGTCAAAGACGGAGGCGAC
GACCCTGACGCAACCCACGGCAGTGTCATACAGGCGCATGTGACGCTGTGCAGTGCGCCTCCTCCCGCAGAAGACACATG
GCGGGGCAGACGCATAACAATCAGCGCGCAGACCATGACCGGCATTGCACAGGCGCTGGACAACGGCGACGGCAGCCTGC
ACCGTGCCTCGCAATGTCTGGATATTCATATTTACGGCGGCACCGGTGTGGGGGTCGTGACTCTGCCCGGTCTGCCGGTG
CCCCCCGGCGAACCCGCCATCAACCCCGAACCCCGTAGGCAGATAGCCGCCGCCGTACTGGAACAGTGCGCCCGGCACGG
ATACTCCGGCGGGGTGGAAGTAACCATATGCGTACCCGACGGCGAAGAACGCGCAGTCAGAACATTCAACCCGAGACTGG
GCATCCGCGGGGGAATTTCCATTCTGGGCACGCGCGGCACGGTAAAGCCATACAGCCACGGCGCATGGCGGGCCACCATC
GTTCAGGGCATGAAGGTGGCGCGCACCACGGGGGCACAGACCGTCTATCTTTCCACAGGGCGCCGCAGCGAGCGTCTGCT
CATGCAGCTGCACCCGCACGAACCGGAAACCGCCTTCGTTCAGGTTGCCGACTTTGCAGAATTTTCGCTGCGACAGGCAG
CACAGGAAGGTTTTGAGCATATTGTCTGGGGGTGTTTTTTCGGCAAGCTGGTCAAACTGGGGGAAGGCCACAGCTACACA
CACGCCCATGCGGCGCAGATAGACTTCCGGACGCTGGCACAGGCATGCCGACACGCCGGGCTGGAAGAAGAACTGGCGCA
GCAGGTGGCCGCGGCCAATACCGCCCGGCATGCGCTGGACATTATGGAGCATTCCGCAGCGCTGCCCCGTGTGCTCAAGG
CTCTGGCCGTAAAAGCGCTGAAGGCTGCCCGGAACCACACCGGCACGGCACCGGCGCTCACCGTCCATCTGTTTGATTTT
GACGGACGGCATCTGGCGCAGGCACATGACTAG

Upstream 100 bases:

>100_bases
AATCACATGGCCGCGCTATCAATAAAAAAGCCGCCTTCCTGAGCGGCAGCCGCACCGCGCCCCCTTGGACGTAACAGTAA
ATGCGCGTATAACGCCCCCC

Downstream 100 bases:

>100_bases
CCCCCGCATGCGCCATGGTGTACCATAGTTCAAACAACCCGATGCCATAACTGCAGGAGGCGACAATGACCATTGATGTG
GTTGGTCTCGGCATGGATGC

Product: cobalamin biosynthesis protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MAKAKKLREGFTTGTAASAAAAAAVKLLLTGGSSQAVSVALPPFSGDARGNIQRLTVPVSACSRTAAAQAAAQVVKDGGD
DPDATHGSVIQAHVTLCSAPPPAEDTWRGRRITISAQTMTGIAQALDNGDGSLHRASQCLDIHIYGGTGVGVVTLPGLPV
PPGEPAINPEPRRQIAAAVLEQCARHGYSGGVEVTICVPDGEERAVRTFNPRLGIRGGISILGTRGTVKPYSHGAWRATI
VQGMKVARTTGAQTVYLSTGRRSERLLMQLHPHEPETAFVQVADFAEFSLRQAAQEGFEHIVWGCFFGKLVKLGEGHSYT
HAHAAQIDFRTLAQACRHAGLEEELAQQVAAANTARHALDIMEHSAALPRVLKALAVKALKAARNHTGTAPALTVHLFDF
DGRHLAQAHD

Sequences:

>Translated_410_residues
MAKAKKLREGFTTGTAASAAAAAAVKLLLTGGSSQAVSVALPPFSGDARGNIQRLTVPVSACSRTAAAQAAAQVVKDGGD
DPDATHGSVIQAHVTLCSAPPPAEDTWRGRRITISAQTMTGIAQALDNGDGSLHRASQCLDIHIYGGTGVGVVTLPGLPV
PPGEPAINPEPRRQIAAAVLEQCARHGYSGGVEVTICVPDGEERAVRTFNPRLGIRGGISILGTRGTVKPYSHGAWRATI
VQGMKVARTTGAQTVYLSTGRRSERLLMQLHPHEPETAFVQVADFAEFSLRQAAQEGFEHIVWGCFFGKLVKLGEGHSYT
HAHAAQIDFRTLAQACRHAGLEEELAQQVAAANTARHALDIMEHSAALPRVLKALAVKALKAARNHTGTAPALTVHLFDF
DGRHLAQAHD
>Mature_409_residues
AKAKKLREGFTTGTAASAAAAAAVKLLLTGGSSQAVSVALPPFSGDARGNIQRLTVPVSACSRTAAAQAAAQVVKDGGDD
PDATHGSVIQAHVTLCSAPPPAEDTWRGRRITISAQTMTGIAQALDNGDGSLHRASQCLDIHIYGGTGVGVVTLPGLPVP
PGEPAINPEPRRQIAAAVLEQCARHGYSGGVEVTICVPDGEERAVRTFNPRLGIRGGISILGTRGTVKPYSHGAWRATIV
QGMKVARTTGAQTVYLSTGRRSERLLMQLHPHEPETAFVQVADFAEFSLRQAAQEGFEHIVWGCFFGKLVKLGEGHSYTH
AHAAQIDFRTLAQACRHAGLEEELAQQVAAANTARHALDIMEHSAALPRVLKALAVKALKAARNHTGTAPALTVHLFDFD
GRHLAQAHD

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 43143; Mature: 43012

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKKLREGFTTGTAASAAAAAAVKLLLTGGSSQAVSVALPPFSGDARGNIQRLTVPVS
CCCHHHHHHCCCCCCHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEHH
ACSRTAAAQAAAQVVKDGGDDPDATHGSVIQAHVTLCSAPPPAEDTWRGRRITISAQTMT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEHHHHH
GIAQALDNGDGSLHRASQCLDIHIYGGTGVGVVTLPGLPVPPGEPAINPEPRRQIAAAVL
HHHHHHHCCCCCHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
EQCARHGYSGGVEVTICVPDGEERAVRTFNPRLGIRGGISILGTRGTVKPYSHGAWRATI
HHHHHCCCCCCEEEEEECCCCCCCHHEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHH
VQGMKVARTTGAQTVYLSTGRRSERLLMQLHPHEPETAFVQVADFAEFSLRQAAQEGFEH
HHHHHHHHCCCCCEEEEECCCCCCCHHEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
IVWGCFFGKLVKLGEGHSYTHAHAAQIDFRTLAQACRHAGLEEELAQQVAAANTARHALD
HHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IMEHSAALPRVLKALAVKALKAARNHTGTAPALTVHLFDFDGRHLAQAHD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
AKAKKLREGFTTGTAASAAAAAAVKLLLTGGSSQAVSVALPPFSGDARGNIQRLTVPVS
CCHHHHHHCCCCCCHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEHH
ACSRTAAAQAAAQVVKDGGDDPDATHGSVIQAHVTLCSAPPPAEDTWRGRRITISAQTMT
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEHHHHH
GIAQALDNGDGSLHRASQCLDIHIYGGTGVGVVTLPGLPVPPGEPAINPEPRRQIAAAVL
HHHHHHHCCCCCHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
EQCARHGYSGGVEVTICVPDGEERAVRTFNPRLGIRGGISILGTRGTVKPYSHGAWRATI
HHHHHCCCCCCEEEEEECCCCCCCHHEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHH
VQGMKVARTTGAQTVYLSTGRRSERLLMQLHPHEPETAFVQVADFAEFSLRQAAQEGFEH
HHHHHHHHCCCCCEEEEECCCCCCCHHEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
IVWGCFFGKLVKLGEGHSYTHAHAAQIDFRTLAQACRHAGLEEELAQQVAAANTARHALD
HHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IMEHSAALPRVLKALAVKALKAARNHTGTAPALTVHLFDFDGRHLAQAHD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA