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The map label for this gene is rbpA [H]

Identifier: 78355840

GI number: 78355840

Start: 814098

End: 814361

Strand: Reverse

Name: rbpA [H]

Synonym: Dde_0793

Alternate gene names: 78355840

Gene position: 814361-814098 (Counterclockwise)

Preceding gene: 78355842

Following gene: 78355834

Centisome position: 21.83

GC content: 57.2

Gene sequence:

>264_bases
TTGACCAAGAATATCTATGTCGGCAACCTTTCGTGGGAATGCACTGATCAGGACCTTCACGCCCTTTTTGCAGATTTCGG
CGACGTAACTTCCGCTCGCGTTATCTCTGACCGTGAAACCGGCCGTTCGCGCGGCTTCGGCTTTGTGGAAATGGACGCCA
ACGGTGCCGCTCAGGCCATCGACTCCCTCAACGCTTCCAGCTTTCAGGGCCGCAACCTCAAAGTAAACGAGGCTCAGCCC
CGTGAGCGCCGTCCCCGCTACTAA

Upstream 100 bases:

>100_bases
TTCAGTTTATACAGAGTGCTTTTCCGCAAGGGAAAGTGCGCCCCTTCCCCACTAGCATTTGCTTTTTTCCGGGGATGATT
TCATTTCGGAGTTTTTAGTT

Downstream 100 bases:

>100_bases
GCTTTAGCAGCGAGAGACTGTCTCGAATTCAAAGGCCGCATACGCGGCCTTTTTTTATGTCTGCCATACGGCGGCTGTAC
AGCAAAGCGCATCCGGCGAC

Product: RNA-binding region RNP-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MTKNIYVGNLSWECTDQDLHALFADFGDVTSARVISDRETGRSRGFGFVEMDANGAAQAIDSLNASSFQGRNLKVNEAQP
RERRPRY

Sequences:

>Translated_87_residues
MTKNIYVGNLSWECTDQDLHALFADFGDVTSARVISDRETGRSRGFGFVEMDANGAAQAIDSLNASSFQGRNLKVNEAQP
RERRPRY
>Mature_86_residues
TKNIYVGNLSWECTDQDLHALFADFGDVTSARVISDRETGRSRGFGFVEMDANGAAQAIDSLNASSFQGRNLKVNEAQPR
ERRPRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI5174637, Length=77, Percent_Identity=48.0519480519481, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI45439316, Length=77, Percent_Identity=48.0519480519481, Blast_Score=71, Evalue=1e-13,
Organism=Homo sapiens, GI303305009, Length=77, Percent_Identity=48.0519480519481, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI14149675, Length=83, Percent_Identity=37.3493975903614, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI4557493, Length=83, Percent_Identity=37.3493975903614, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=46.6666666666667, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508587, Length=78, Percent_Identity=48.7179487179487, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=42.6666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17539498, Length=89, Percent_Identity=41.5730337078652, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17137710, Length=83, Percent_Identity=36.144578313253, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17647301, Length=79, Percent_Identity=41.7721518987342, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9728; Mature: 9597

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKNIYVGNLSWECTDQDLHALFADFGDVTSARVISDRETGRSRGFGFVEMDANGAAQAI
CCCCEEECCCEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHH
DSLNASSFQGRNLKVNEAQPRERRPRY
HHCCCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
TKNIYVGNLSWECTDQDLHALFADFGDVTSARVISDRETGRSRGFGFVEMDANGAAQAI
CCCEEECCCEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHH
DSLNASSFQGRNLKVNEAQPRERRPRY
HHCCCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]