| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is 78355787
Identifier: 78355787
GI number: 78355787
Start: 767543
End: 768682
Strand: Reverse
Name: 78355787
Synonym: Dde_0740
Alternate gene names: NA
Gene position: 768682-767543 (Counterclockwise)
Preceding gene: 78355788
Following gene: 78355786
Centisome position: 20.61
GC content: 60.79
Gene sequence:
>1140_bases ATGACTTCTCCCTGCCCGCAAATTTTATGGAACATGACAAGAAAATGCAATTTTTCCTGTCATTACTGTTACTTTCCCCA TGACAACTCACCCGTTTCCGACTCATTACCCGTCGCCGCGCTGCTGGACTTTCTGCGGTCGCGCGGAGGAGAATGGCTGG TGGGACTAACCGGCGGTGAACCGTTCATCTATCCGTATTTTGTGGATATCTGCAGTGCCATTGCCGCAGAACACCGTATC GGCATTGATACCAACCTCAGTGTGACACCGGTCGTCAAACGCTTTGCCCGGCACGTACCGCCCGACAGAGTGCACGACAT ATACGCCGCGCTGCACATTGAAGAACGCGAACGCAGAGGGGCTGTGGATGCTTTTATCCGCAATTACCATACCCTTGCCG GGCGCGGTTTCACGGTCAAGGTGAACTATGTGGTGCACCCGTCGCTGGTGCAGCGCTTTGCCGCCGACTGTGAATTTTTC GGCCGCCACGGAATACCGCTCACACCGCGCCCCTTCAAGGGCGTTTACGAAGGCCGCAGATACCCCGAAGGATACGGCAG CACAGCCGCAGCCATTTTTACACAGCACCCCGAAGCGGGCAGAAAAACCGTTTTCAACTTTCACGGCGTACCCTGCCACG GCGGGCACACCTTTCTGCGCATGGAGCCGGACGGCACGGTGCTGCGCTGCCCCGGCGACAAGACGGTGCTCGGCAACGTG CTTTCAGGCACTGTGCAGACAGAAAGCGGCCCCACCCCGTGCCGCATGCACCGCTGCCCCTGTCAGGGTGTGGAGCACAT CCTGCCCGACGCCGCGCAGCAGGATTTCATCGAGGGTGTGCGCGCCTATGTGGTGGGCGACCTGCCCGCGGCGCAACGGG CCTTTACCGCCGCACACAGCCGGGCACCGGCCATGACACAGGCTGCCAACAACGCCGGTGTGGCCGCATTCGCCGCGGGC GATGCTCAGGCGGCAGCGTGCTGTTTTGCCCGGGCTGCCGCCGACGATCCAGTCACACCGCTTTATGCCGCCAATCTCAA GCTGGCCCGCCGCGCGGCACAACCGTCTCCGCCTTCCGGAACGGAAAACGAAACGCCTGAACTCTCACTTGCAGTCAACT ACCAGCGTACCGGCAACTGA
Upstream 100 bases:
>100_bases TTTACAGTACTCCGGCAGGGCATAAAAAGCCAGCATATTTTTTTCTGATAATTAATGAAGCACTATAGAAAAAAGGTCCG CTCTGCTGTATGAAAAGAGT
Downstream 100 bases:
>100_bases CCAAAAGAGCAGCCGCATGTCCCAGACATATAATATACTGATGTATTCGCACGACACATACGGGCTGGGGCACATCCGCA GAACCATGACCATAGCGCAG
Product: Fe-S oxidoreductase-like
Products: NA
Alternate protein names: Radical SAM Domain Protein; Radical Sam Domain Protein; Fe-S Oxidoreductase-Like
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MTSPCPQILWNMTRKCNFSCHYCYFPHDNSPVSDSLPVAALLDFLRSRGGEWLVGLTGGEPFIYPYFVDICSAIAAEHRI GIDTNLSVTPVVKRFARHVPPDRVHDIYAALHIEERERRGAVDAFIRNYHTLAGRGFTVKVNYVVHPSLVQRFAADCEFF GRHGIPLTPRPFKGVYEGRRYPEGYGSTAAAIFTQHPEAGRKTVFNFHGVPCHGGHTFLRMEPDGTVLRCPGDKTVLGNV LSGTVQTESGPTPCRMHRCPCQGVEHILPDAAQQDFIEGVRAYVVGDLPAAQRAFTAAHSRAPAMTQAANNAGVAAFAAG DAQAAACCFARAAADDPVTPLYAANLKLARRAAQPSPPSGTENETPELSLAVNYQRTGN
Sequences:
>Translated_379_residues MTSPCPQILWNMTRKCNFSCHYCYFPHDNSPVSDSLPVAALLDFLRSRGGEWLVGLTGGEPFIYPYFVDICSAIAAEHRI GIDTNLSVTPVVKRFARHVPPDRVHDIYAALHIEERERRGAVDAFIRNYHTLAGRGFTVKVNYVVHPSLVQRFAADCEFF GRHGIPLTPRPFKGVYEGRRYPEGYGSTAAAIFTQHPEAGRKTVFNFHGVPCHGGHTFLRMEPDGTVLRCPGDKTVLGNV LSGTVQTESGPTPCRMHRCPCQGVEHILPDAAQQDFIEGVRAYVVGDLPAAQRAFTAAHSRAPAMTQAANNAGVAAFAAG DAQAAACCFARAAADDPVTPLYAANLKLARRAAQPSPPSGTENETPELSLAVNYQRTGN >Mature_378_residues TSPCPQILWNMTRKCNFSCHYCYFPHDNSPVSDSLPVAALLDFLRSRGGEWLVGLTGGEPFIYPYFVDICSAIAAEHRIG IDTNLSVTPVVKRFARHVPPDRVHDIYAALHIEERERRGAVDAFIRNYHTLAGRGFTVKVNYVVHPSLVQRFAADCEFFG RHGIPLTPRPFKGVYEGRRYPEGYGSTAAAIFTQHPEAGRKTVFNFHGVPCHGGHTFLRMEPDGTVLRCPGDKTVLGNVL SGTVQTESGPTPCRMHRCPCQGVEHILPDAAQQDFIEGVRAYVVGDLPAAQRAFTAAHSRAPAMTQAANNAGVAAFAAGD AQAAACCFARAAADDPVTPLYAANLKLARRAAQPSPPSGTENETPELSLAVNYQRTGN
Specific function: Unknown
COG id: COG0535
COG function: function code R; Predicted Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41218; Mature: 41087
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPCPQILWNMTRKCNFSCHYCYFPHDNSPVSDSLPVAALLDFLRSRGGEWLVGLTGGE CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCC PFIYPYFVDICSAIAAEHRIGIDTNLSVTPVVKRFARHVPPDRVHDIYAALHIEERERRG CEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHEEHHHHHCC AVDAFIRNYHTLAGRGFTVKVNYVVHPSLVQRFAADCEFFGRHGIPLTPRPFKGVYEGRR HHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCC YPEGYGSTAAAIFTQHPEAGRKTVFNFHGVPCHGGHTFLRMEPDGTVLRCPGDKTVLGNV CCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEECCCCCHHHHHH LSGTVQTESGPTPCRMHRCPCQGVEHILPDAAQQDFIEGVRAYVVGDLPAAQRAFTAAHS HHCEEECCCCCCCHHCCCCCCHHHHHHCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHH RAPAMTQAANNAGVAAFAAGDAQAAACCFARAAADDPVTPLYAANLKLARRAAQPSPPSG CCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC TENETPELSLAVNYQRTGN CCCCCCEEEEEEEEEECCC >Mature Secondary Structure TSPCPQILWNMTRKCNFSCHYCYFPHDNSPVSDSLPVAALLDFLRSRGGEWLVGLTGGE CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCC PFIYPYFVDICSAIAAEHRIGIDTNLSVTPVVKRFARHVPPDRVHDIYAALHIEERERRG CEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHEEHHHHHCC AVDAFIRNYHTLAGRGFTVKVNYVVHPSLVQRFAADCEFFGRHGIPLTPRPFKGVYEGRR HHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCC YPEGYGSTAAAIFTQHPEAGRKTVFNFHGVPCHGGHTFLRMEPDGTVLRCPGDKTVLGNV CCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEECCCCCHHHHHH LSGTVQTESGPTPCRMHRCPCQGVEHILPDAAQQDFIEGVRAYVVGDLPAAQRAFTAAHS HHCEEECCCCCCCHHCCCCCCHHHHHHCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHH RAPAMTQAANNAGVAAFAAGDAQAAACCFARAAADDPVTPLYAANLKLARRAAQPSPPSG CCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC TENETPELSLAVNYQRTGN CCCCCCEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA