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The map label for this gene is hybB [C]

Identifier: 78355698

GI number: 78355698

Start: 668988

End: 670157

Strand: Reverse

Name: hybB [C]

Synonym: Dde_0651

Alternate gene names: 78355698

Gene position: 670157-668988 (Counterclockwise)

Preceding gene: 78355699

Following gene: 78355697

Centisome position: 17.97

GC content: 57.09

Gene sequence:

>1170_bases
ATGGCTGACATACAGAACAACCGTAACGGGTTGCTGACACCCGGCAACATCCTGACGGCCATTATCCTTGTGGGCGGTCT
CATTCTGACGTTCATCCGCTTCACTCAGGGTATCGGCGCCGTTTCCAACCTTGACCACAACAACCCCTGGGGTGTGTGGA
TCGGATTTGACCTGCTGTGCGGTGTGGCACTGGCAGCCGGTGGCTATGTCACCAGCGCCGCATGCTACCTGTTCGGTCTC
AAACGTTTTCATTCCGCGGTGCGTCCGGCCATAACCACGGCGTTCCTCGGCTACTTCTTTGTGGTTATCGCCCTCACCTA
CGACCTCGGCCATCCGCTGCGTCTGCCCTATCCCATATTCTACTCGCAGGGCACCACGTCGCTGCTGTTTGAAGTGGGTC
TGTGCGTCATGACGTATCTTACCGTGCTGTTCATCGAATGGTCGCCCGCAGCGCTGGAATGGCTGGGACTGCGCAAGATA
CGCAACATCGTGGTCAAGTTCACGCTGGTGCTCACCATCTTCGGCGTTGTGCTTTCCACACTGCACCAGTCCTCGCTGGG
CGCCCTGTTCCTCATCGCACCCAGCAAGCTGCACCCGCTGTGGTACTCCTCGTTCCTGCCCGTATTCTTCTTCATCTCTT
CCATGGTTGCCGGCCTTTCCATGGTTATCTTTGAAGGTACGCTGGCGCACAAGGGGCTGCATCACATGATGGACAAAACC
CATCTGGACGAAGCTGACGACGTGGTGCTGGGCTTCGGCAAAGCCGCCGCCTTTGTGCTGGCGGGCTACTTCTGCATCAA
GACCATGGACATAGCCATGGACAACGACTGGCACTACCTTGCCACCGGCTACGGCGCGTGGTTTCTGGTGGAAATGTTCG
GCTTTGTGGCGCTGCCCGCATTTCTGTATGCGCTGGGCGTACGCGAAAAGAACAAGACCATCATCCGCGTGGCTTCCATC
AACGCCGTGCTGGGCATCGTGATGAACCGCTTCAACGTTTCTCTGGTGGCATTCAACTATCAGCTGCCCGCAGACGAACG
TTACTTCCCCCACTGGATGGAAATAGGCATTTCCATCTTCATCGTGACCATGATCATCACGGTGTACCGGTTCATCGCCA
CACGTATGCCCGTGCTGTTCGAGCACCCCGACTACAAAGACGCCCACTAG

Upstream 100 bases:

>100_bases
AAAGGAAGAGGCTGAAAAAGAGTTCGAAGCGCGCCTTGCCGCTCAAAACGAACCCGAATCCGCCGAATCCGGGACGGAAA
AGCCCGAGGAGGACGCATAA

Downstream 100 bases:

>100_bases
GCTGGCGTGAAGGAGAAAACTCATGGAACAGATGTTTTACACGCTTCATGAATTCATGCTGCACTCCAAGGGCATCACCT
ATATCCTTATGGGAGTGACC

Product: hmc operon protein 3

Products: NA

Alternate protein names: HMC operon ORF 3 [H]

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MADIQNNRNGLLTPGNILTAIILVGGLILTFIRFTQGIGAVSNLDHNNPWGVWIGFDLLCGVALAAGGYVTSAACYLFGL
KRFHSAVRPAITTAFLGYFFVVIALTYDLGHPLRLPYPIFYSQGTTSLLFEVGLCVMTYLTVLFIEWSPAALEWLGLRKI
RNIVVKFTLVLTIFGVVLSTLHQSSLGALFLIAPSKLHPLWYSSFLPVFFFISSMVAGLSMVIFEGTLAHKGLHHMMDKT
HLDEADDVVLGFGKAAAFVLAGYFCIKTMDIAMDNDWHYLATGYGAWFLVEMFGFVALPAFLYALGVREKNKTIIRVASI
NAVLGIVMNRFNVSLVAFNYQLPADERYFPHWMEIGISIFIVTMIITVYRFIATRMPVLFEHPDYKDAH

Sequences:

>Translated_389_residues
MADIQNNRNGLLTPGNILTAIILVGGLILTFIRFTQGIGAVSNLDHNNPWGVWIGFDLLCGVALAAGGYVTSAACYLFGL
KRFHSAVRPAITTAFLGYFFVVIALTYDLGHPLRLPYPIFYSQGTTSLLFEVGLCVMTYLTVLFIEWSPAALEWLGLRKI
RNIVVKFTLVLTIFGVVLSTLHQSSLGALFLIAPSKLHPLWYSSFLPVFFFISSMVAGLSMVIFEGTLAHKGLHHMMDKT
HLDEADDVVLGFGKAAAFVLAGYFCIKTMDIAMDNDWHYLATGYGAWFLVEMFGFVALPAFLYALGVREKNKTIIRVASI
NAVLGIVMNRFNVSLVAFNYQLPADERYFPHWMEIGISIFIVTMIITVYRFIATRMPVLFEHPDYKDAH
>Mature_388_residues
ADIQNNRNGLLTPGNILTAIILVGGLILTFIRFTQGIGAVSNLDHNNPWGVWIGFDLLCGVALAAGGYVTSAACYLFGLK
RFHSAVRPAITTAFLGYFFVVIALTYDLGHPLRLPYPIFYSQGTTSLLFEVGLCVMTYLTVLFIEWSPAALEWLGLRKIR
NIVVKFTLVLTIFGVVLSTLHQSSLGALFLIAPSKLHPLWYSSFLPVFFFISSMVAGLSMVIFEGTLAHKGLHHMMDKTH
LDEADDVVLGFGKAAAFVLAGYFCIKTMDIAMDNDWHYLATGYGAWFLVEMFGFVALPAFLYALGVREKNKTIIRVASIN
AVLGIVMNRFNVSLVAFNYQLPADERYFPHWMEIGISIFIVTMIITVYRFIATRMPVLFEHPDYKDAH

Specific function: HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=387, Percent_Identity=30.4909560723514, Blast_Score=164, Evalue=8e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 43354; Mature: 43223

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCEEECCCCCCCCC
>Mature Secondary Structure 
ADIQNNRNGLLTPGNILTAIILVGGLILTFIRFTQGIGAVSNLDHNNPWGVWIGFDLLC
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEHHHHHH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HHHHHHHHHHHHHHCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8335628 [H]