Click here to switch to the map view.

The map label for this gene is rfaQ [C]

Identifier: 78355612

GI number: 78355612

Start: 587903

End: 589534

Strand: Reverse

Name: rfaQ [C]

Synonym: Dde_0565

Alternate gene names: 78355612

Gene position: 589534-587903 (Counterclockwise)

Preceding gene: 78355613

Following gene: 78355611

Centisome position: 15.8

GC content: 63.73

Gene sequence:

>1632_bases
ATGAACACGCTGATTATCAACCTGACCCGCTTCGGCGACCTGCTGCAGACCCAGCCCGTCATCTCCGGCCTCACAGCACG
CGGGCACCGCGTCAGTCTGGTGTGTCTGGAAAATTTTGCTCCGGCCACGGCCATGCTGCGTCATGTGGAAGCGGTGTACC
CGCTGCCCGGCGCGCGCCTGCTTTCGCTTATGGAATCAGGATGGCACGGCGGACTGAGCGAGTTGTGGCAGTGGTCGCGC
ACCGTGCGCAGCAACGCCGCACCGCGGACAGTGCTCAATCTGACGGCATCGCTCAGTGTGCGGCTGCTTGCGCGGCATCT
GACAGGTGCCGACGCGCAACTGCACGGCTTTGCGCTGGACAGTGAAGGTTTCGGGCACAACACCGACCCGTGGTCCACCT
TTCTGCAGGCATCAACCCGCATGCGCGGCTGCAGTCCGTTCAATATCATCGACCTGTTCCGCATGTCCGCCGGTCTGGAC
GGCACGCAGTGCCCCTTTGAACTGAACAGCCCCGCGGACAGCGTGCGCGAAGCCATGAACAACACACTGCAGGCGCACAC
CGGCAACCTGCTGCGCAGCGGGGCCATGCGGCACCCTCCGCGCGGCTTTGTCGCCCTGCAGCCCGGCGCCAGCGAAGAAC
GCCGCCGCTGGCCGGTGGAGCATTTCGCCCGCACGGGTGACATGCTGTGGCAGTCTCACGGCCTGTGCCCCGTACTGCTG
GGTTCCGGCGCCGAAGCGGAGCTGGGCCGCAGATACGCCGCAGCCGCCACGGCCCCGCACATCAACCTTATAGGTGCAAC
CGACCTGCCCTCACTGGGGGCCGCGCTGCTGGCAGCGCGGCTGCTCATCAGCAACGACACCGGCACAATGCATCTTGCGG
CCGGGCTGGGGGTGCCCGTTCTGGCCATCTTTCTGGCCACAGCCCAACCGTGGGACACGGGCCCCTACAAAGAAGGTATG
TGCAGTCTGGAACCGGACCTGCCCTGCCACCCCTGCCCTTTCAACAGCCGGTGCCCGCATGAACACATCTGCCGCAGGCA
CATACAGCCGGCCACAGTGCACGCCATGACGGCGCGCTGGCTTGATACAGGCTTCTGGTCCGCCCAGCCGGAGGAAAAAG
ATGCCCGTGTGTGGATTTCACGCCTGCGGTCCGACGGGTTTCTTGATCTGGAATCACTTTCCGGACACGAAAACACCGAC
CGGACGGTATGGGTGCGTCTGCAGCGCCATTTTTACAGTCAATTTCTTGACCGCGCACCGGCCGCCCGTTTCGGCACAGG
CACCGTGCGCACCATCAACGAACCGGAACAATTGCTCAAACCGGAAAATGACACCCTGCAGGCCGCTCTGGATGAGCTGG
CACAGGCCGACGCCCTGCTTCACCTGCTGCAGGAACAGGGCAACGCCCTGCGCCACCGCTCGGTGGAAATGCTGAAAAAA
CGTTTTCTGGCCACATGGCAGAAGCTTCAGGTGCTCTGGGATGCAAGCCCGCGGTTCAATGTTCTCGGCTTCTTATGGAT
GAGCGAAACGCAGGAGGCCGGAGCCTGTCTGGATACGGTGCTGGCACTGGCCGCCCGTTACCGGACCCTGATCACCACAT
GGCGCACGCATCTGCTCCGTGAAGGCATCTGA

Upstream 100 bases:

>100_bases
CCTGCCTTTTGTATTGCACCGCCGCACACGGAAACCGGCACGCGTTGGCACGAAAACCGCAGCACAGCCCGCAGCTTCGT
TATCACGACAGGAAACCGAC

Downstream 100 bases:

>100_bases
CCGGCACGGATACTGCATAACGATAAACATCCCTGATAATCGTTTCCCATCAGCGAGTATTTTTTGAGGAGGGAGAAACC
CCATGATCATCATCGACGGA

Product: heptosyltransferase family protein

Products: NA

Alternate protein names: Heptosyltransferase Family Protein; ADP-Heptose-LPS Heptosyltransferase II; Glycosyl Transferase Family Protein; Lipopolysaccharide Heptosyltransferase; ADP-HeptoseLPS Heptosyltransferase; Glycosyltransferase

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MNTLIINLTRFGDLLQTQPVISGLTARGHRVSLVCLENFAPATAMLRHVEAVYPLPGARLLSLMESGWHGGLSELWQWSR
TVRSNAAPRTVLNLTASLSVRLLARHLTGADAQLHGFALDSEGFGHNTDPWSTFLQASTRMRGCSPFNIIDLFRMSAGLD
GTQCPFELNSPADSVREAMNNTLQAHTGNLLRSGAMRHPPRGFVALQPGASEERRRWPVEHFARTGDMLWQSHGLCPVLL
GSGAEAELGRRYAAAATAPHINLIGATDLPSLGAALLAARLLISNDTGTMHLAAGLGVPVLAIFLATAQPWDTGPYKEGM
CSLEPDLPCHPCPFNSRCPHEHICRRHIQPATVHAMTARWLDTGFWSAQPEEKDARVWISRLRSDGFLDLESLSGHENTD
RTVWVRLQRHFYSQFLDRAPAARFGTGTVRTINEPEQLLKPENDTLQAALDELAQADALLHLLQEQGNALRHRSVEMLKK
RFLATWQKLQVLWDASPRFNVLGFLWMSETQEAGACLDTVLALAARYRTLITTWRTHLLREGI

Sequences:

>Translated_543_residues
MNTLIINLTRFGDLLQTQPVISGLTARGHRVSLVCLENFAPATAMLRHVEAVYPLPGARLLSLMESGWHGGLSELWQWSR
TVRSNAAPRTVLNLTASLSVRLLARHLTGADAQLHGFALDSEGFGHNTDPWSTFLQASTRMRGCSPFNIIDLFRMSAGLD
GTQCPFELNSPADSVREAMNNTLQAHTGNLLRSGAMRHPPRGFVALQPGASEERRRWPVEHFARTGDMLWQSHGLCPVLL
GSGAEAELGRRYAAAATAPHINLIGATDLPSLGAALLAARLLISNDTGTMHLAAGLGVPVLAIFLATAQPWDTGPYKEGM
CSLEPDLPCHPCPFNSRCPHEHICRRHIQPATVHAMTARWLDTGFWSAQPEEKDARVWISRLRSDGFLDLESLSGHENTD
RTVWVRLQRHFYSQFLDRAPAARFGTGTVRTINEPEQLLKPENDTLQAALDELAQADALLHLLQEQGNALRHRSVEMLKK
RFLATWQKLQVLWDASPRFNVLGFLWMSETQEAGACLDTVLALAARYRTLITTWRTHLLREGI
>Mature_543_residues
MNTLIINLTRFGDLLQTQPVISGLTARGHRVSLVCLENFAPATAMLRHVEAVYPLPGARLLSLMESGWHGGLSELWQWSR
TVRSNAAPRTVLNLTASLSVRLLARHLTGADAQLHGFALDSEGFGHNTDPWSTFLQASTRMRGCSPFNIIDLFRMSAGLD
GTQCPFELNSPADSVREAMNNTLQAHTGNLLRSGAMRHPPRGFVALQPGASEERRRWPVEHFARTGDMLWQSHGLCPVLL
GSGAEAELGRRYAAAATAPHINLIGATDLPSLGAALLAARLLISNDTGTMHLAAGLGVPVLAIFLATAQPWDTGPYKEGM
CSLEPDLPCHPCPFNSRCPHEHICRRHIQPATVHAMTARWLDTGFWSAQPEEKDARVWISRLRSDGFLDLESLSGHENTD
RTVWVRLQRHFYSQFLDRAPAARFGTGTVRTINEPEQLLKPENDTLQAALDELAQADALLHLLQEQGNALRHRSVEMLKK
RFLATWQKLQVLWDASPRFNVLGFLWMSETQEAGACLDTVLALAARYRTLITTWRTHLLREGI

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 60181; Mature: 60181

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLIINLTRFGDLLQTQPVISGLTARGHRVSLVCLENFAPATAMLRHVEAVYPLPGARL
CCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHH
LSLMESGWHGGLSELWQWSRTVRSNAAPRTVLNLTASLSVRLLARHLTGADAQLHGFALD
HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
SEGFGHNTDPWSTFLQASTRMRGCSPFNIIDLFRMSAGLDGTQCPFELNSPADSVREAMN
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHH
NTLQAHTGNLLRSGAMRHPPRGFVALQPGASEERRRWPVEHFARTGDMLWQSHGLCPVLL
HHHHHHCCHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEE
GSGAEAELGRRYAAAATAPHINLIGATDLPSLGAALLAARLLISNDTGTMHLAAGLGVPV
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
LAIFLATAQPWDTGPYKEGMCSLEPDLPCHPCPFNSRCPHEHICRRHIQPATVHAMTARW
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHH
LDTGFWSAQPEEKDARVWISRLRSDGFLDLESLSGHENTDRTVWVRLQRHFYSQFLDRAP
HHCCCCCCCCCCHHHHHHHHHHCCCCCEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
AARFGTGTVRTINEPEQLLKPENDTLQAALDELAQADALLHLLQEQGNALRHRSVEMLKK
CCCCCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RFLATWQKLQVLWDASPRFNVLGFLWMSETQEAGACLDTVLALAARYRTLITTWRTHLLR
HHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGI
CCC
>Mature Secondary Structure
MNTLIINLTRFGDLLQTQPVISGLTARGHRVSLVCLENFAPATAMLRHVEAVYPLPGARL
CCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHH
LSLMESGWHGGLSELWQWSRTVRSNAAPRTVLNLTASLSVRLLARHLTGADAQLHGFALD
HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
SEGFGHNTDPWSTFLQASTRMRGCSPFNIIDLFRMSAGLDGTQCPFELNSPADSVREAMN
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHH
NTLQAHTGNLLRSGAMRHPPRGFVALQPGASEERRRWPVEHFARTGDMLWQSHGLCPVLL
HHHHHHCCHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEE
GSGAEAELGRRYAAAATAPHINLIGATDLPSLGAALLAARLLISNDTGTMHLAAGLGVPV
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
LAIFLATAQPWDTGPYKEGMCSLEPDLPCHPCPFNSRCPHEHICRRHIQPATVHAMTARW
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHH
LDTGFWSAQPEEKDARVWISRLRSDGFLDLESLSGHENTDRTVWVRLQRHFYSQFLDRAP
HHCCCCCCCCCCHHHHHHHHHHCCCCCEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
AARFGTGTVRTINEPEQLLKPENDTLQAALDELAQADALLHLLQEQGNALRHRSVEMLKK
CCCCCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RFLATWQKLQVLWDASPRFNVLGFLWMSETQEAGACLDTVLALAARYRTLITTWRTHLLR
HHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGI
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA