| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is 78355462
Identifier: 78355462
GI number: 78355462
Start: 412015
End: 414006
Strand: Reverse
Name: 78355462
Synonym: Dde_0415
Alternate gene names: NA
Gene position: 414006-412015 (Counterclockwise)
Preceding gene: 78355463
Following gene: 78355459
Centisome position: 11.1
GC content: 61.7
Gene sequence:
>1992_bases ATGAACGTCTACATTTTTTTCCACATGAATCTCATGTTCTCTTCCGTACCCGAATCCATGCGTACGGAGCTGGTCAGGCG ATGCTATACGCCGCTGCTTGATCTGGCGGAAGAGGGCTGCTTTCCGCTGGGCATCGAAGCTTCCGGGCTGACCCTTGAAC TGCTGCACGACTGCTGCCCCCGATGGGTCAGCCGGCTGGCGGGGCTGGTCCGCGACGGCGCGTGCGAATTCATCGGCTCC GGCTATGCCCAGATCATCGGCCCCCTTAATCCGGCCAGTGTCAACATGCACAACCTGCGTCTGGGCAACAGCGTCTACAG CTCGCTGCTGGGCGTAACGCCGCGGCTGGCGCTGGTCAACGAACAGGCCTTTTCTCCGGGCCTTGTGCCTTTGTACCGTG CTGCCGGCTACACGGGCATCATCATGGAATGGGAAAACGCACGGCAGGCGCACCCGCACTGGGAGCACCATCTGCAGGCC GCCCCCCAGCGGGTTGCGGGCACGCGGGGTGAAAGCATGGATCTGCTGTGGAATCATTCACTGCCCTTTCAGCAGTTTCA GCGCGCCGTGCACGACGAAGTCACGCCGGAAGAATATCTGGAGGGCCTGCGAAACCGGACCGGTACGGACGCCGCCTTGT GTCTGTACGGCAATGATGCGGAAATTTTCGACTTCCGTCCGGGAAGGTTCTGCACCGAACCCGAACTGACCGGACGCAGC GAATGGCAGACCATCCGGGACCTGCTGTGCGCCGTGCGCGCCCTGCCGGGCGTCCGGCCCGTGCTGCCCTCGCAGGCGCT GAAAAACACCATGCCGCAGCGTCCGGCACTGCTGCATCTGGAAAGCCCCGCACAACCCGTCCCTGTAAAAAAGCAGGCCA AATACAACATCACCCGCTGGGGTGTGACCGGCGTGGACGACACCGGAGCAAACACGCTGTGCAGACGCCTTGCACGGCAT TTCGCCGCCTGCGAAGGCAAAAACGCATCAGACCGGCCGGACAGCCCTGCACAAAGCGGGCATGACAGCCTCTGGAAAGA GCTTGTCTACCTGTGCTCAAGCGACTTCCGCACGCACATCGTACCGGAACGGTGGCAGGCATTCCGCCAGCGGCTGCTGG CATTTTATGAGACCCACATGCCGCATATGCCCGCCGGAGACGCGCTGCCCGCCACCTGTACCGTGCCCCCCCAGCGCGTG CCCGCCGCCAACCGCCTGCTGAAACTGGAAACACCCCATACAGCCATCACGCTCAACCGCAACCGCGGGCTGGCCGTACA GGCGCTGCGGTTCGGCGGCGTAAATACACTGCCCGTAGCGGGCACGCTGGCACTGGGCACATATGACGACATGGCGCTGG GGGCTGATTTCTATTCGGGACATGTGACATTTGAAATGCCCGGCGAACCCAAAGCCACTGATCTTGTGCCCGTGGTGCCC CGCATAACTGAAACAGCGCGGACAATCCGCGTGGAAACGCAGATCAGCCGCGCTCCGCTGCTCCTGCATAAAAGCATCAC GCTGTATAAAGACACCCCCCGTGCGGACATACGCTACCGCTTCGGCGCTCCCCTGCCTGCGGGCAGCCTGCGGCTGGGGT ACATCACCCTTACGCCGCAGTCCTATGACCGGCGCACGCTGCGTTATGCCACCCACAACGGCGGAACCGAACCGGAAGAA CATCTTTTGTACGGCAGCAGCACAGACCACGGCAGAGCTGTATCGTTTCTGGTTTCGGCGTCATGCGCCGCCGGTATGAC AGAAGGTACGGCGGAATTCGGCGACGCCCGCCACGGACTGCGCATCACACTGACCGGAGATTCGGCCGCTGCGCTGTGCA TGGTGACCTACCGCGAAGCTTCTCCGTCTTTTTTTGCCAGAATCATGTTCTCGCTGCAGGAAGTGGATGACACGTCACGT TTCGGCAACGGTGTGCGCAAGGTCATACCAGCTCCCTGTTTTTCATTCAGCATAACCCCTTACAACCGCTGA
Upstream 100 bases:
>100_bases GCCTGTATTATCTGTGGGTGCTGTGCGGTACGCAGCGGTGCAGCATCATTGCCGACGACCCCGCCCACGCCTGGATACAC GGGCTGACCTGATCGCCGCC
Downstream 100 bases:
>100_bases ACAACACAGGCCCACCGCTGCGCCGCAAAAAAACAGGCCTCAACAGCGCCCGCAGCACACCGGAAAGCAGGTCGGCAGTC ACACGAGGATCACACGAAAT
Product: alpha amylase domain-containing protein
Products: NA
Alternate protein names: Alpha Amylase Domain-Containing Protein; Glycoside Hydrolase Family; Alpha Amylase Domain Protein
Number of amino acids: Translated: 663; Mature: 663
Protein sequence:
>663_residues MNVYIFFHMNLMFSSVPESMRTELVRRCYTPLLDLAEEGCFPLGIEASGLTLELLHDCCPRWVSRLAGLVRDGACEFIGS GYAQIIGPLNPASVNMHNLRLGNSVYSSLLGVTPRLALVNEQAFSPGLVPLYRAAGYTGIIMEWENARQAHPHWEHHLQA APQRVAGTRGESMDLLWNHSLPFQQFQRAVHDEVTPEEYLEGLRNRTGTDAALCLYGNDAEIFDFRPGRFCTEPELTGRS EWQTIRDLLCAVRALPGVRPVLPSQALKNTMPQRPALLHLESPAQPVPVKKQAKYNITRWGVTGVDDTGANTLCRRLARH FAACEGKNASDRPDSPAQSGHDSLWKELVYLCSSDFRTHIVPERWQAFRQRLLAFYETHMPHMPAGDALPATCTVPPQRV PAANRLLKLETPHTAITLNRNRGLAVQALRFGGVNTLPVAGTLALGTYDDMALGADFYSGHVTFEMPGEPKATDLVPVVP RITETARTIRVETQISRAPLLLHKSITLYKDTPRADIRYRFGAPLPAGSLRLGYITLTPQSYDRRTLRYATHNGGTEPEE HLLYGSSTDHGRAVSFLVSASCAAGMTEGTAEFGDARHGLRITLTGDSAAALCMVTYREASPSFFARIMFSLQEVDDTSR FGNGVRKVIPAPCFSFSITPYNR
Sequences:
>Translated_663_residues MNVYIFFHMNLMFSSVPESMRTELVRRCYTPLLDLAEEGCFPLGIEASGLTLELLHDCCPRWVSRLAGLVRDGACEFIGS GYAQIIGPLNPASVNMHNLRLGNSVYSSLLGVTPRLALVNEQAFSPGLVPLYRAAGYTGIIMEWENARQAHPHWEHHLQA APQRVAGTRGESMDLLWNHSLPFQQFQRAVHDEVTPEEYLEGLRNRTGTDAALCLYGNDAEIFDFRPGRFCTEPELTGRS EWQTIRDLLCAVRALPGVRPVLPSQALKNTMPQRPALLHLESPAQPVPVKKQAKYNITRWGVTGVDDTGANTLCRRLARH FAACEGKNASDRPDSPAQSGHDSLWKELVYLCSSDFRTHIVPERWQAFRQRLLAFYETHMPHMPAGDALPATCTVPPQRV PAANRLLKLETPHTAITLNRNRGLAVQALRFGGVNTLPVAGTLALGTYDDMALGADFYSGHVTFEMPGEPKATDLVPVVP RITETARTIRVETQISRAPLLLHKSITLYKDTPRADIRYRFGAPLPAGSLRLGYITLTPQSYDRRTLRYATHNGGTEPEE HLLYGSSTDHGRAVSFLVSASCAAGMTEGTAEFGDARHGLRITLTGDSAAALCMVTYREASPSFFARIMFSLQEVDDTSR FGNGVRKVIPAPCFSFSITPYNR >Mature_663_residues MNVYIFFHMNLMFSSVPESMRTELVRRCYTPLLDLAEEGCFPLGIEASGLTLELLHDCCPRWVSRLAGLVRDGACEFIGS GYAQIIGPLNPASVNMHNLRLGNSVYSSLLGVTPRLALVNEQAFSPGLVPLYRAAGYTGIIMEWENARQAHPHWEHHLQA APQRVAGTRGESMDLLWNHSLPFQQFQRAVHDEVTPEEYLEGLRNRTGTDAALCLYGNDAEIFDFRPGRFCTEPELTGRS EWQTIRDLLCAVRALPGVRPVLPSQALKNTMPQRPALLHLESPAQPVPVKKQAKYNITRWGVTGVDDTGANTLCRRLARH FAACEGKNASDRPDSPAQSGHDSLWKELVYLCSSDFRTHIVPERWQAFRQRLLAFYETHMPHMPAGDALPATCTVPPQRV PAANRLLKLETPHTAITLNRNRGLAVQALRFGGVNTLPVAGTLALGTYDDMALGADFYSGHVTFEMPGEPKATDLVPVVP RITETARTIRVETQISRAPLLLHKSITLYKDTPRADIRYRFGAPLPAGSLRLGYITLTPQSYDRRTLRYATHNGGTEPEE HLLYGSSTDHGRAVSFLVSASCAAGMTEGTAEFGDARHGLRITLTGDSAAALCMVTYREASPSFFARIMFSLQEVDDTSR FGNGVRKVIPAPCFSFSITPYNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73415; Mature: 73415
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVYIFFHMNLMFSSVPESMRTELVRRCYTPLLDLAEEGCFPLGIEASGLTLELLHDCCP CEEEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHH RWVSRLAGLVRDGACEFIGSGYAQIIGPLNPASVNMHNLRLGNSVYSSLLGVTPRLALVN HHHHHHHHHHHCCHHHHHCCCHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEC EQAFSPGLVPLYRAAGYTGIIMEWENARQAHPHWEHHLQAAPQRVAGTRGESMDLLWNHS CCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCHHHHCCCCCCCEEEEECCC LPFQQFQRAVHDEVTPEEYLEGLRNRTGTDAALCLYGNDAEIFDFRPGRFCTEPELTGRS CCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCH EWQTIRDLLCAVRALPGVRPVLPSQALKNTMPQRPALLHLESPAQPVPVKKQAKYNITRW HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEC GVTGVDDTGANTLCRRLARHFAACEGKNASDRPDSPAQSGHDSLWKELVYLCSSDFRTHI CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC VPERWQAFRQRLLAFYETHMPHMPAGDALPATCTVPPQRVPAANRLLKLETPHTAITLNR CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCEEEEEEC NRGLAVQALRFGGVNTLPVAGTLALGTYDDMALGADFYSGHVTFEMPGEPKATDLVPVVP CCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHCCCEECCEEEEECCCCCCCCCCCCCCH RITETARTIRVETQISRAPLLLHKSITLYKDTPRADIRYRFGAPLPAGSLRLGYITLTPQ HHHHHHHEEEEEEHHCCCCEEEECCEEEEECCCCCCEEEEECCCCCCCCEEEEEEEECCC SYDRRTLRYATHNGGTEPEEHLLYGSSTDHGRAVSFLVSASCAAGMTEGTAEFGDARHGL CCCCCEEEEEECCCCCCHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCE RITLTGDSAAALCMVTYREASPSFFARIMFSLQEVDDTSRFGNGVRKVIPAPCFSFSITP EEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEECCC YNR CCC >Mature Secondary Structure MNVYIFFHMNLMFSSVPESMRTELVRRCYTPLLDLAEEGCFPLGIEASGLTLELLHDCCP CEEEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHH RWVSRLAGLVRDGACEFIGSGYAQIIGPLNPASVNMHNLRLGNSVYSSLLGVTPRLALVN HHHHHHHHHHHCCHHHHHCCCHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEC EQAFSPGLVPLYRAAGYTGIIMEWENARQAHPHWEHHLQAAPQRVAGTRGESMDLLWNHS CCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCHHHHCCCCCCCEEEEECCC LPFQQFQRAVHDEVTPEEYLEGLRNRTGTDAALCLYGNDAEIFDFRPGRFCTEPELTGRS CCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCH EWQTIRDLLCAVRALPGVRPVLPSQALKNTMPQRPALLHLESPAQPVPVKKQAKYNITRW HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEC GVTGVDDTGANTLCRRLARHFAACEGKNASDRPDSPAQSGHDSLWKELVYLCSSDFRTHI CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC VPERWQAFRQRLLAFYETHMPHMPAGDALPATCTVPPQRVPAANRLLKLETPHTAITLNR CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCEEEEEEC NRGLAVQALRFGGVNTLPVAGTLALGTYDDMALGADFYSGHVTFEMPGEPKATDLVPVVP CCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHCCCEECCEEEEECCCCCCCCCCCCCCH RITETARTIRVETQISRAPLLLHKSITLYKDTPRADIRYRFGAPLPAGSLRLGYITLTPQ HHHHHHHEEEEEEHHCCCCEEEECCEEEEECCCCCCEEEEECCCCCCCCEEEEEEEECCC SYDRRTLRYATHNGGTEPEEHLLYGSSTDHGRAVSFLVSASCAAGMTEGTAEFGDARHGL CCCCCEEEEEECCCCCCHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCE RITLTGDSAAALCMVTYREASPSFFARIMFSLQEVDDTSRFGNGVRKVIPAPCFSFSITP EEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEECCC YNR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA