Click here to switch to the map view.

The map label for this gene is yrbE [C]

Identifier: 78355070

GI number: 78355070

Start: 20610

End: 21362

Strand: Reverse

Name: yrbE [C]

Synonym: Dde_0023

Alternate gene names: 78355070

Gene position: 21362-20610 (Counterclockwise)

Preceding gene: 78355071

Following gene: 78355069

Centisome position: 0.57

GC content: 55.78

Gene sequence:

>753_bases
ATGCCGCGCGAGGTGCAGACATTCGTCTGGCTGATAAACAGTCTGTTGTCGTGGCCTGCACAGGCACGTCGCCGGCAGCG
CGTTTTCTACCGGCGGCTGATGTGGCATCAGCTTGCCGAAACGGGCACAAGATCGCTGGGTATTGTTTCAGTTATCGCTG
CCTGCACGGGTATGATTCTGGCGCTGCAGGCGGCGCAGCAGCTGGAAAAGGTGGGGGCGCTGAGCTATGTGGCTAACATG
GTCAGCGTGACCATTGTCAAGGAACTGGGACCGCTGCTTACAGCCATCATTCTGGCAGGCCGTTCCGGAGCGGCATTCTG
CGCCGAAATATCAACCATGCAGATATATGAAGAGATTGACGCGCTTGAGGTCATAGGCATCTCGCCTGTACGGTATCTTG
TGGTGCCCAAGCTTTGTGCCATGCTGATCATGCTTCCTGTGCTTACACTGTGGGCAGACCTTGTGGGTATCATTTCCGGC
GGTCTGTTCGCTGCGCTGGGGCTGGGGCTTTCATTCAGCGGGTACCTGAATCAGGCCGTGTATTTTCTGGGTACGGGCGA
TGTTGTTTCCAGCGTGGTCAAAGCCGCCGGTTTCGGTACAGCCATCACCCTGATATGTTGCTGGCAGGGATTCATGGCAC
AGGGTGGTGCGGCGGATGTGGGCAGACGCACCACCAAGGCTGTTGTGCAGTCAATATTCATGGTCATCCTGCTTGATCTG
TTTTTTACAGCCATCAATTATCTGGCAGGATAG

Upstream 100 bases:

>100_bases
AAATACGCATAAGTGCAGCTTCGGTGCGCGTGCGGCAACTTTTTGAACTCACCCAGATAGCGCCGATTTTCGGTCTGCGG
AAGGACAGGGCAGACTGAGC

Downstream 100 bases:

>100_bases
ATCATGCACTCTTCACCATCCATAACCCTGCAGGATGTCGATGTGGGCTACCCGCACAATATTGTGCTGCACAACCTGCA
TCTGACCATTCCGGCCGGCA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MPREVQTFVWLINSLLSWPAQARRRQRVFYRRLMWHQLAETGTRSLGIVSVIAACTGMILALQAAQQLEKVGALSYVANM
VSVTIVKELGPLLTAIILAGRSGAAFCAEISTMQIYEEIDALEVIGISPVRYLVVPKLCAMLIMLPVLTLWADLVGIISG
GLFAALGLGLSFSGYLNQAVYFLGTGDVVSSVVKAAGFGTAITLICCWQGFMAQGGAADVGRRTTKAVVQSIFMVILLDL
FFTAINYLAG

Sequences:

>Translated_250_residues
MPREVQTFVWLINSLLSWPAQARRRQRVFYRRLMWHQLAETGTRSLGIVSVIAACTGMILALQAAQQLEKVGALSYVANM
VSVTIVKELGPLLTAIILAGRSGAAFCAEISTMQIYEEIDALEVIGISPVRYLVVPKLCAMLIMLPVLTLWADLVGIISG
GLFAALGLGLSFSGYLNQAVYFLGTGDVVSSVVKAAGFGTAITLICCWQGFMAQGGAADVGRRTTKAVVQSIFMVILLDL
FFTAINYLAG
>Mature_249_residues
PREVQTFVWLINSLLSWPAQARRRQRVFYRRLMWHQLAETGTRSLGIVSVIAACTGMILALQAAQQLEKVGALSYVANMV
SVTIVKELGPLLTAIILAGRSGAAFCAEISTMQIYEEIDALEVIGISPVRYLVVPKLCAMLIMLPVLTLWADLVGIISGG
LFAALGLGLSFSGYLNQAVYFLGTGDVVSSVVKAAGFGTAITLICCWQGFMAQGGAADVGRRTTKAVVQSIFMVILLDLF
FTAINYLAG

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=241, Percent_Identity=30.2904564315353, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 26886; Mature: 26755

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCC
>Mature Secondary Structure 
PREVQTFVWLINSLLSWPAQARRRQRVFYRRLMWHQLAETGTRSLGIVSVIAACTGMIL
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ALQAAQQLEKVGALSYVANMVSVTIVKELGPLLTAIILAGRSGAAFCAEISTMQIYEEID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ALEVIGISPVRYLVVPKLCAMLIMLPVLTLWADLVGIISGGLFAALGLGLSFSGYLNQAV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
YFLGTGDVVSSVVKAAGFGTAITLICCWQGFMAQGGAADVGRRTTKAVVQSIFMVILLDL
HHEECHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FFTAINYLAG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA