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The map label for this gene is rsmB [H]

Identifier: 78355064

GI number: 78355064

Start: 16213

End: 17547

Strand: Direct

Name: rsmB [H]

Synonym: Dde_0017

Alternate gene names: 78355064

Gene position: 16213-17547 (Clockwise)

Preceding gene: 78355063

Following gene: 78355077

Centisome position: 0.43

GC content: 57.15

Gene sequence:

>1335_bases
ATGAAAAAACAGTCCCCTCGCCGTGGCGGTGTTGCAACACTTCCTCCGGCACGAGGTGCCGCTTTGGAAATATTGCGCGA
TGTGCTTGATAAAAAGCGTGAAGCACAGAGTGTGCTGGACAGTTACCTTAAAGACAACAGATTAAGCCCTCAGGATGCCG
CTCTGTGCACGGAGCTTGTGTATGGATACCTGAGGTCGGAAATCAGAATTTCGTGGCTTATACGCCGTTTTTTAAAGCCG
GATTCACGGCTGCCCGCGGAGCTTTTGCTGACAATGGGTATTTCTGTGTATGAAATACTGTATTTACAGCGTGTTCCTGT
ATATGCGTCGGTGGACTGGGCTGTTTCGTATGTGCGTTCGCGGTTCGGAACGGGACTTTCGCGTCTGGCCAACGCTGTTT
TGCGCAGCATCGACCGGCTGGGCGATGCTCCGCTGCAATCCGGCTGGTATCGTGAAACGCTGCAGGCCGAAGGCGTTGAT
ACCGCAGGATATCTGTCGGTATGGTATGCCGCTCCGCGGTGGGTTGTTGATATGTGGATTGAAGCATATGGCGAGGAACG
TGCTGAGCAGTATCTTGCCGGTTCATCACGTCACGCTCCTGCCGGGGTGCGCATCAACCTGCGGCATCCCGAAGGGCCAC
AGACGCATGCCCGCCTGACCGCTCATCCTTCATGTATCGGGCACAGTGCCGCAGGATTGCTTTTTGCTTCCGACTCCCGC
CCTGCCGAACTGTATGTTCTGCAGGAGGAGGGAATAGCTTCGTCGCAGTCTTTTGCCGTGCAGGAAGTTATGGACGCACT
GCGTCCCGAAACATGGGAAGGCCCTGTGTGGGACTGCTGCTGCGGACGCGGCGGTAAAACATGTTCGCTGCTCGAACGGG
GCGTGGATGTATGTGCAGCCAGTGATCCCAGTGAAAAACGTCTTAAAGGGCTGCGTACGGAGCTGGAGCGGCTGGGGCTG
CCTGATGTTCCGTTGTTTGCGGCTCCCGCCTCGCAGGTTCCGGAGGGTATAGCTCCTCGTGCCGTGCTGGCTGATGTGCC
CTGCTCCGGACTTGGTACGCTTTCACGCCGTCCCGACATACGGCAGCACCGCACTCCCTATTCCATGGCGCGGCTGGTTA
CGCTGCAGTCGGAAATTCTGGACAATGTCTGGCAGGTTCTGCCCGCCGGCGGCCTGCTTGCTTACATTACCTGTACTCTG
AATCCCGAGGAAAACGAACTGCAGATAGCCCGGTTTATGGAGCGCAGCCAGGCACAGCTGATGCTGGAGTGGACGACTCC
GCCCGACAGCCCTGCGTGTGAATATTTTTACGCGGCGCTGCTGCGCAAAGCGTGA

Upstream 100 bases:

>100_bases
TTATGGAAGTTGCGCTCCGCATGTTTATCCATAATCCCCCTCCTCCGCTCGACCTTGAAGCTGCCATAAAAGCCGAGGCT
GAACTTAAACGAGGCCGTTC

Downstream 100 bases:

>100_bases
CATGATTCAGTATGATTTGCCCGCCATCCTTTATGGGATGGCGGGCATTTTTATGCACCGCCCTGCACAGGGCAGGAGGA
GAACGTGGCACTTCAGGTTA

Product: sun protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYLKDNRLSPQDAALCTELVYGYLRSEIRISWLIRRFLKP
DSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVRSRFGTGLSRLANAVLRSIDRLGDAPLQSGWYRETLQAEGVD
TAGYLSVWYAAPRWVVDMWIEAYGEERAEQYLAGSSRHAPAGVRINLRHPEGPQTHARLTAHPSCIGHSAAGLLFASDSR
PAELYVLQEEGIASSQSFAVQEVMDALRPETWEGPVWDCCCGRGGKTCSLLERGVDVCAASDPSEKRLKGLRTELERLGL
PDVPLFAAPASQVPEGIAPRAVLADVPCSGLGTLSRRPDIRQHRTPYSMARLVTLQSEILDNVWQVLPAGGLLAYITCTL
NPEENELQIARFMERSQAQLMLEWTTPPDSPACEYFYAALLRKA

Sequences:

>Translated_444_residues
MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYLKDNRLSPQDAALCTELVYGYLRSEIRISWLIRRFLKP
DSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVRSRFGTGLSRLANAVLRSIDRLGDAPLQSGWYRETLQAEGVD
TAGYLSVWYAAPRWVVDMWIEAYGEERAEQYLAGSSRHAPAGVRINLRHPEGPQTHARLTAHPSCIGHSAAGLLFASDSR
PAELYVLQEEGIASSQSFAVQEVMDALRPETWEGPVWDCCCGRGGKTCSLLERGVDVCAASDPSEKRLKGLRTELERLGL
PDVPLFAAPASQVPEGIAPRAVLADVPCSGLGTLSRRPDIRQHRTPYSMARLVTLQSEILDNVWQVLPAGGLLAYITCTL
NPEENELQIARFMERSQAQLMLEWTTPPDSPACEYFYAALLRKA
>Mature_444_residues
MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYLKDNRLSPQDAALCTELVYGYLRSEIRISWLIRRFLKP
DSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVRSRFGTGLSRLANAVLRSIDRLGDAPLQSGWYRETLQAEGVD
TAGYLSVWYAAPRWVVDMWIEAYGEERAEQYLAGSSRHAPAGVRINLRHPEGPQTHARLTAHPSCIGHSAAGLLFASDSR
PAELYVLQEEGIASSQSFAVQEVMDALRPETWEGPVWDCCCGRGGKTCSLLERGVDVCAASDPSEKRLKGLRTELERLGL
PDVPLFAAPASQVPEGIAPRAVLADVPCSGLGTLSRRPDIRQHRTPYSMARLVTLQSEILDNVWQVLPAGGLLAYITCTL
NPEENELQIARFMERSQAQLMLEWTTPPDSPACEYFYAALLRKA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=163, Percent_Identity=31.9018404907975, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI76150623, Length=163, Percent_Identity=31.9018404907975, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI39995082, Length=166, Percent_Identity=31.3253012048193, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI301336155, Length=166, Percent_Identity=31.3253012048193, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI2367212, Length=448, Percent_Identity=28.7946428571429, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI87081985, Length=137, Percent_Identity=35.036496350365, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: 2.1.1.-

Molecular weight: Translated: 49237; Mature: 49237

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYLKDNRLSPQDAALCTELV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YGYLRSEIRISWLIRRFLKPDSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVRS
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
RFGTGLSRLANAVLRSIDRLGDAPLQSGWYRETLQAEGVDTAGYLSVWYAAPRWVVDMWI
HHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHH
EAYGEERAEQYLAGSSRHAPAGVRINLRHPEGPQTHARLTAHPSCIGHSAAGLLFASDSR
HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEECCCHHHCCCCCCEEEECCCC
PAELYVLQEEGIASSQSFAVQEVMDALRPETWEGPVWDCCCGRGGKTCSLLERGVDVCAA
CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHCHHHCCC
SDPSEKRLKGLRTELERLGLPDVPLFAAPASQVPEGIAPRAVLADVPCSGLGTLSRRPDI
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHEECCCCCCCCCCCCCCCH
RQHRTPYSMARLVTLQSEILDNVWQVLPAGGLLAYITCTLNPEENELQIARFMERSQAQL
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEE
MLEWTTPPDSPACEYFYAALLRKA
EEEECCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYLKDNRLSPQDAALCTELV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YGYLRSEIRISWLIRRFLKPDSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVRS
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
RFGTGLSRLANAVLRSIDRLGDAPLQSGWYRETLQAEGVDTAGYLSVWYAAPRWVVDMWI
HHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHH
EAYGEERAEQYLAGSSRHAPAGVRINLRHPEGPQTHARLTAHPSCIGHSAAGLLFASDSR
HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEECCCHHHCCCCCCEEEECCCC
PAELYVLQEEGIASSQSFAVQEVMDALRPETWEGPVWDCCCGRGGKTCSLLERGVDVCAA
CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHCHHHCCC
SDPSEKRLKGLRTELERLGLPDVPLFAAPASQVPEGIAPRAVLADVPCSGLGTLSRRPDI
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHEECCCCCCCCCCCCCCCH
RQHRTPYSMARLVTLQSEILDNVWQVLPAGGLLAYITCTLNPEENELQIARFMERSQAQL
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEE
MLEWTTPPDSPACEYFYAALLRKA
EEEECCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]