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The map label for this gene is rlpA [C]

Identifier: 78224569

GI number: 78224569

Start: 3793569

End: 3794021

Strand: Reverse

Name: rlpA [C]

Synonym: Gmet_3379

Alternate gene names: 78224569

Gene position: 3794021-3793569 (Counterclockwise)

Preceding gene: 78224570

Following gene: 78224566

Centisome position: 94.91

GC content: 56.29

Gene sequence:

>453_bases
TTGGTATCTGTTTACCGGAAGGGGCGTCTGGCCACCCTGATTATTCTTTGCCAGGCGTTCTTCCAGATCCAGACACTGTC
CTTGCAAGCAGATGAAATTGCAGCAAAGGCAACAACGGAGGGGGTCGCATCAGCGACCACGAAAGCGGATGAGGGGGTCA
TAGGGACCGCCTCATACTATGCAAAGCGGTATAACGGAAGAAGAATGACATCGGGGAAGCGGTACAATCCGCAGGAGCTG
ACCGCCGCGCACCCCACCCTCCCTCTCGGAACCAAGGTCAAGGTAGTTAACGTGGCCAACAACCGGGAGGTGACGGTCAC
CATAACCGATCGCTGCCGGAAGAAAGTGTCGCATTTCATTGACCTTTCCCGGGCCGCGGCCAGGAAACTCGGCTTCCTCG
GCAGGGGAACAACGGTAGTTCGGATTATCACCCTCGACGAAGCAGTATCCTGA

Upstream 100 bases:

>100_bases
ATTGAAATATCTGCATATTGCCTCTGGATGGCACTCTTTTTTCTTGACCTGACTTCCCCGTCTGTGCTATTAAAGCGCCT
CGCCCAGAAGGAGGTGCCTA

Downstream 100 bases:

>100_bases
AAAACAACATTTGGGCGAACAGTAGAAAAGGGTCGGCACCATGCCGACCCTTTTCTCGTTTTAAATCTCCCTCACCCGGT
TACCGGGAGCTATACGCCTC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MVSVYRKGRLATLIILCQAFFQIQTLSLQADEIAAKATTEGVASATTKADEGVIGTASYYAKRYNGRRMTSGKRYNPQEL
TAAHPTLPLGTKVKVVNVANNREVTVTITDRCRKKVSHFIDLSRAAARKLGFLGRGTTVVRIITLDEAVS

Sequences:

>Translated_150_residues
MVSVYRKGRLATLIILCQAFFQIQTLSLQADEIAAKATTEGVASATTKADEGVIGTASYYAKRYNGRRMTSGKRYNPQEL
TAAHPTLPLGTKVKVVNVANNREVTVTITDRCRKKVSHFIDLSRAAARKLGFLGRGTTVVRIITLDEAVS
>Mature_150_residues
MVSVYRKGRLATLIILCQAFFQIQTLSLQADEIAAKATTEGVASATTKADEGVIGTASYYAKRYNGRRMTSGKRYNPQEL
TAAHPTLPLGTKVKVVNVANNREVTVTITDRCRKKVSHFIDLSRAAARKLGFLGRGTTVVRIITLDEAVS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 16360; Mature: 16360

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSVYRKGRLATLIILCQAFFQIQTLSLQADEIAAKATTEGVASATTKADEGVIGTASYY
CCCCCCCCCHHHHHHHHHHHHHHHHEEECHHHHHHHHHHCCHHHHCCCCCCCEEEHHHHH
AKRYNGRRMTSGKRYNPQELTAAHPTLPLGTKVKVVNVANNREVTVTITDRCRKKVSHFI
HHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHH
DLSRAAARKLGFLGRGTTVVRIITLDEAVS
HHHHHHHHHHCCCCCCCEEEEEEEECCCCC
>Mature Secondary Structure
MVSVYRKGRLATLIILCQAFFQIQTLSLQADEIAAKATTEGVASATTKADEGVIGTASYY
CCCCCCCCCHHHHHHHHHHHHHHHHEEECHHHHHHHHHHCCHHHHCCCCCCCEEEHHHHH
AKRYNGRRMTSGKRYNPQELTAAHPTLPLGTKVKVVNVANNREVTVTITDRCRKKVSHFI
HHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHH
DLSRAAARKLGFLGRGTTVVRIITLDEAVS
HHHHHHHHHHCCCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]