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The map label for this gene is clpV1 [H]

Identifier: 78224506

GI number: 78224506

Start: 3730457

End: 3733093

Strand: Direct

Name: clpV1 [H]

Synonym: Gmet_3315

Alternate gene names: 78224506

Gene position: 3730457-3733093 (Clockwise)

Preceding gene: 78224505

Following gene: 78224507

Centisome position: 93.32

GC content: 68.22

Gene sequence:

>2637_bases
ATGCTGACCGTTGACCTTAAAGCCCTCATATCCCGCCTCAATCCCCACTGTTCCGGCGCCCTGGAAGGGGCGGCGGGGCT
TTGCGTGGCCCGGGGCCACTACGAGGTGACCGTGGAGCACCTCTTGGCGCGGCTTCTGGACGAGCCGGGGGGTGACCTCC
CCCTCATCCTCCGGGCCTTCGAGGTGGATGCCGCATCCGTGAAGGCCGGGATCACCAGGGTCCTCGACGAGCTTCCCTCC
GGGAACTCGGGGAAGCCGGTCTTCTCGCCGGTGCTTCTGGAGTGGCTCCAGGCAGCGTGGCTCATCACCTCCCTCGACCT
CAACGAAGAGCGGATCCGCTCCGGCGCGCTGCTGCTGGCGCTCCTGGCCCGGCCGCTCCAGCTCACGGCGGGCCGCTACG
TGGACCTTCTAATGGCCGTGGGGAGGGAGACGCTCCTCTCCCGCTTCGGCACGGCCACGGCCGGTTCGGTGGAGCATGCA
CCGACCAGTGTCCGCTCCGCAACCAGCGACGAGGCACCCAAGGGAACCACCTCTCTCGACCGCTTCTGCACCGATTTCAC
CCGCCAGGCGGCGGAAGGTAATATCGACCCGGTCTTCGGCCGGGACCGGGAGATCGGCCAGATGGTCGACATCCTGGCCC
GGCGCCGGAAGAACAACCCCATCATCGTCGGCGAGGCGGGGGTCGGGAAGACCGCCGTAGCCGAAGGGCTTGCACTTCGG
ATTGTGGAGGGGGACGTGCCGGAGGCCCTCCGGGAGGTACGGCTCCTGGGGCTCGATCTGGGGCTTCTCCAGGCGGGGGC
CGGAGTGAAGGGTGAGTTCGAGAACCGCTTGAAAAGCGTCATCGAGGAGGTGAAGGGGTCGCCGCGCCCCATCATCCTCT
TCATCGACGAGGCCCATACCATCATCGGCGCCGGGGGGCAGACCGGCGGAGGTGACGCCGCTAACCTCCTGAAACCGGCC
CTGGCCCGAGGGGAACTGCGGACCATCGCCGCCACCACCTGGAGCGAGTACAAGAAATATTTCGAAAAGGACGCGGCCCT
GGCCCGGCGCTTCCAGCCGGTGAAGCTGGACGAGCCGGACGTCGAGACCGCCGTCCTGATCCTGCGGGGTCTCAAGGAGA
AGTACGAGGCGGCCCACGGGGTCACCATCCGGGACGACGGCATCCGGGCGGCGGCGGAGCTTTCTTCCCGCTACCTGTCG
GGGCGCCAGCTCCCGGACAAGGCAGTGGACCTCCTGGATACGGCGGCGGCCCGGGTGAAGCTCCTTCTCACCGGGAAGCC
GGGGGCCGTGGAGGAGAAAGAGCGCCGCATCCAGGCTCTGGAGAGGGAAGAGGCGGCCATGGCCCGGGACCAGCTCCACG
GCCGCCCCGTTGACGACGAGCGACTGGATCTCCTGAAGGCGGAATTGTTAACCCTGCGGGAGGAGTTGGCCGCCGTCACG
GCGCGGTGGCACCGGGAACAGGAGCTGGCCGCGGAAGTGATGGCCCTTCGCAAGGAACTGTCGACGGAAGCGGAAGAAAA
CGAAGATCGGCGAGGACTGAAACGGCAGGTGACCGAGGCCACGGCTCGCCTAGCGGAGTTCCAGGGTGACGCCCCATTGG
TACGGATCGAGGTGGAGCCGGAGGTGGTGGCCCGGGTGGTGGCCGACTGGACAGGCATCCCCCTGGGGAGCCTCCAGAAG
GACCGGGCCGCCGGGGTCCTCACCCTGGAGGGCGACCTGCGCCGCCGCATCAAGGGGCAGGAGCCGGCCCTCTCCGCCGT
GGCCGAGGTGCTCCGCTCCTCGGCGGCAGGGCTCAAGGACCCACGCCAGCCCCTGGGAGTTTTTCTCCTGGTGGGGCCGT
CGGGGGTCGGGAAGACCGAGACGGCCCTGGCCGTGGCCGACCTCCTCTTCGGGGGGGAGCGGTTCCTCACGGTCATCAAC
ATGAGCGAGTTCCAGGAGCGCCACACCACGAGCCGCCTCATCGGCTCGCCGCCGGGGTACGTGGGGTACGGCGAGGGGGG
GGTCCTCACGGAGGCGGTCCGGCGCCAGCCCTACTCGGTGGTCCTCCTGGACGAAGTGGAGAAGGCCCACCCCGACGTCA
TGAACCTCTTCTACCAGGTCTTCGACAAGGGGATGCTGGCCGACGGCGAGGGGCGGGTCATCGACTTCGCCAACACAGTC
ATCTTCCTCACGAGTAACCTGGCCTCGGATGTCATCACCTCCCTCTGTTGCGGGGATCAAGCACCGACGGCGGAGGGGCT
GACCTCCGCCATCCGCCCCCACCTCTCCCGACACTTCAAGCCGGCGCTCCTGGCCCGGATGTCGGTGGTCCCCTACCTGA
CCCTGGCCCCCGAGTACCTGGGGGAGATCGTTACCCTGAAGCTGGGGCGGGTGGCGGAGCGGCTCCGGGAGAACAGCCGA
ACGGCGCTTTCTTGGACCCCGGCGGTCACGGAACGGATCGCGGCCCGCTGCACCGAGGTGGAGAGCGGCGCCCGGACCAT
CGACCATATCCTACGGAGCACGCTGCTGCCGCTTCTCTCCCGGGAAATTCTCCCCCGGCTCGGCACCGGCGAGACGCCGG
AGGCTATCAGGCTCGACACGACGGCCGACGGCGACTTTGCCGTCACCTTTGATACCAGTGGAGGCATGGAACAATGA

Upstream 100 bases:

>100_bases
AGGGGCGGATGTGGGGCGGGTGTCGGTGAGCTTTCCCGGCGGAGGGGAGCCCCTCGCGGCACCTCGTTAACCGAACAAAC
CCAAGGAGAATCAACCATTC

Downstream 100 bases:

>100_bases
ACCAGCATCAAACAGCAATGGGTATCGCCAGGATGGCGTTTCTCCTCTCCCTTTCGCTCACGGCAGCGTGTGCCACCGTG
AATACCGCTCCCGTCGAGGA

Product: AAA ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 878; Mature: 878

Protein sequence:

>878_residues
MLTVDLKALISRLNPHCSGALEGAAGLCVARGHYEVTVEHLLARLLDEPGGDLPLILRAFEVDAASVKAGITRVLDELPS
GNSGKPVFSPVLLEWLQAAWLITSLDLNEERIRSGALLLALLARPLQLTAGRYVDLLMAVGRETLLSRFGTATAGSVEHA
PTSVRSATSDEAPKGTTSLDRFCTDFTRQAAEGNIDPVFGRDREIGQMVDILARRRKNNPIIVGEAGVGKTAVAEGLALR
IVEGDVPEALREVRLLGLDLGLLQAGAGVKGEFENRLKSVIEEVKGSPRPIILFIDEAHTIIGAGGQTGGGDAANLLKPA
LARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPDVETAVLILRGLKEKYEAAHGVTIRDDGIRAAAELSSRYLS
GRQLPDKAVDLLDTAAARVKLLLTGKPGAVEEKERRIQALEREEAAMARDQLHGRPVDDERLDLLKAELLTLREELAAVT
ARWHREQELAAEVMALRKELSTEAEENEDRRGLKRQVTEATARLAEFQGDAPLVRIEVEPEVVARVVADWTGIPLGSLQK
DRAAGVLTLEGDLRRRIKGQEPALSAVAEVLRSSAAGLKDPRQPLGVFLLVGPSGVGKTETALAVADLLFGGERFLTVIN
MSEFQERHTTSRLIGSPPGYVGYGEGGVLTEAVRRQPYSVVLLDEVEKAHPDVMNLFYQVFDKGMLADGEGRVIDFANTV
IFLTSNLASDVITSLCCGDQAPTAEGLTSAIRPHLSRHFKPALLARMSVVPYLTLAPEYLGEIVTLKLGRVAERLRENSR
TALSWTPAVTERIAARCTEVESGARTIDHILRSTLLPLLSREILPRLGTGETPEAIRLDTTADGDFAVTFDTSGGMEQ

Sequences:

>Translated_878_residues
MLTVDLKALISRLNPHCSGALEGAAGLCVARGHYEVTVEHLLARLLDEPGGDLPLILRAFEVDAASVKAGITRVLDELPS
GNSGKPVFSPVLLEWLQAAWLITSLDLNEERIRSGALLLALLARPLQLTAGRYVDLLMAVGRETLLSRFGTATAGSVEHA
PTSVRSATSDEAPKGTTSLDRFCTDFTRQAAEGNIDPVFGRDREIGQMVDILARRRKNNPIIVGEAGVGKTAVAEGLALR
IVEGDVPEALREVRLLGLDLGLLQAGAGVKGEFENRLKSVIEEVKGSPRPIILFIDEAHTIIGAGGQTGGGDAANLLKPA
LARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPDVETAVLILRGLKEKYEAAHGVTIRDDGIRAAAELSSRYLS
GRQLPDKAVDLLDTAAARVKLLLTGKPGAVEEKERRIQALEREEAAMARDQLHGRPVDDERLDLLKAELLTLREELAAVT
ARWHREQELAAEVMALRKELSTEAEENEDRRGLKRQVTEATARLAEFQGDAPLVRIEVEPEVVARVVADWTGIPLGSLQK
DRAAGVLTLEGDLRRRIKGQEPALSAVAEVLRSSAAGLKDPRQPLGVFLLVGPSGVGKTETALAVADLLFGGERFLTVIN
MSEFQERHTTSRLIGSPPGYVGYGEGGVLTEAVRRQPYSVVLLDEVEKAHPDVMNLFYQVFDKGMLADGEGRVIDFANTV
IFLTSNLASDVITSLCCGDQAPTAEGLTSAIRPHLSRHFKPALLARMSVVPYLTLAPEYLGEIVTLKLGRVAERLRENSR
TALSWTPAVTERIAARCTEVESGARTIDHILRSTLLPLLSREILPRLGTGETPEAIRLDTTADGDFAVTFDTSGGMEQ
>Mature_878_residues
MLTVDLKALISRLNPHCSGALEGAAGLCVARGHYEVTVEHLLARLLDEPGGDLPLILRAFEVDAASVKAGITRVLDELPS
GNSGKPVFSPVLLEWLQAAWLITSLDLNEERIRSGALLLALLARPLQLTAGRYVDLLMAVGRETLLSRFGTATAGSVEHA
PTSVRSATSDEAPKGTTSLDRFCTDFTRQAAEGNIDPVFGRDREIGQMVDILARRRKNNPIIVGEAGVGKTAVAEGLALR
IVEGDVPEALREVRLLGLDLGLLQAGAGVKGEFENRLKSVIEEVKGSPRPIILFIDEAHTIIGAGGQTGGGDAANLLKPA
LARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPDVETAVLILRGLKEKYEAAHGVTIRDDGIRAAAELSSRYLS
GRQLPDKAVDLLDTAAARVKLLLTGKPGAVEEKERRIQALEREEAAMARDQLHGRPVDDERLDLLKAELLTLREELAAVT
ARWHREQELAAEVMALRKELSTEAEENEDRRGLKRQVTEATARLAEFQGDAPLVRIEVEPEVVARVVADWTGIPLGSLQK
DRAAGVLTLEGDLRRRIKGQEPALSAVAEVLRSSAAGLKDPRQPLGVFLLVGPSGVGKTETALAVADLLFGGERFLTVIN
MSEFQERHTTSRLIGSPPGYVGYGEGGVLTEAVRRQPYSVVLLDEVEKAHPDVMNLFYQVFDKGMLADGEGRVIDFANTV
IFLTSNLASDVITSLCCGDQAPTAEGLTSAIRPHLSRHFKPALLARMSVVPYLTLAPEYLGEIVTLKLGRVAERLRENSR
TALSWTPAVTERIAARCTEVESGARTIDHILRSTLLPLLSREILPRLGTGETPEAIRLDTTADGDFAVTFDTSGGMEQ

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=288, Percent_Identity=35.7638888888889, Blast_Score=171, Evalue=4e-42,
Organism=Escherichia coli, GI1788943, Length=889, Percent_Identity=38.3577052868391, Blast_Score=549, Evalue=1e-157,
Organism=Escherichia coli, GI1787109, Length=421, Percent_Identity=38.2422802850356, Blast_Score=266, Evalue=6e-72,
Organism=Saccharomyces cerevisiae, GI6320464, Length=701, Percent_Identity=39.2296718972896, Blast_Score=478, Evalue=1e-135,
Organism=Saccharomyces cerevisiae, GI6323002, Length=689, Percent_Identity=38.3164005805515, Blast_Score=461, Evalue=1e-130,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 95100; Mature: 95100

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTVDLKALISRLNPHCSGALEGAAGLCVARGHYEVTVEHLLARLLDEPGGDLPLILRAF
CCEECHHHHHHHCCCCCCCHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
EVDAASVKAGITRVLDELPSGNSGKPVFSPVLLEWLQAAWLITSLDLNEERIRSGALLLA
HCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLARPLQLTAGRYVDLLMAVGRETLLSRFGTATAGSVEHAPTSVRSATSDEAPKGTTSLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHH
RFCTDFTRQAAEGNIDPVFGRDREIGQMVDILARRRKNNPIIVGEAGVGKTAVAEGLALR
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCEEE
IVEGDVPEALREVRLLGLDLGLLQAGAGVKGEFENRLKSVIEEVKGSPRPIILFIDEAHT
EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCE
IIGAGGQTGGGDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPD
EEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
VETAVLILRGLKEKYEAAHGVTIRDDGIRAAAELSSRYLSGRQLPDKAVDLLDTAAARVK
HHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEE
LLLTGKPGAVEEKERRIQALEREEAAMARDQLHGRPVDDERLDLLKAELLTLREELAAVT
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ARWHREQELAAEVMALRKELSTEAEENEDRRGLKRQVTEATARLAEFQGDAPLVRIEVEP
HHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECH
EVVARVVADWTGIPLGSLQKDRAAGVLTLEGDLRRRIKGQEPALSAVAEVLRSSAAGLKD
HHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
PRQPLGVFLLVGPSGVGKTETALAVADLLFGGERFLTVINMSEFQERHTTSRLIGSPPGY
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHEEEECHHHHHHHHHHHHHCCCCCCC
VGYGEGGVLTEAVRRQPYSVVLLDEVEKAHPDVMNLFYQVFDKGMLADGEGRVIDFANTV
CCCCCCCHHHHHHHCCCCEEEEEHHHHHHCHHHHHHHHHHHCCCCEECCCCCEEEECCEE
IFLTSNLASDVITSLCCGDQAPTAEGLTSAIRPHLSRHFKPALLARMSVVPYLTLAPEYL
EEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
GEIVTLKLGRVAERLRENSRTALSWTPAVTERIAARCTEVESGARTIDHILRSTLLPLLS
HHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REILPRLGTGETPEAIRLDTTADGDFAVTFDTSGGMEQ
HHHHHCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MLTVDLKALISRLNPHCSGALEGAAGLCVARGHYEVTVEHLLARLLDEPGGDLPLILRAF
CCEECHHHHHHHCCCCCCCHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
EVDAASVKAGITRVLDELPSGNSGKPVFSPVLLEWLQAAWLITSLDLNEERIRSGALLLA
HCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LLARPLQLTAGRYVDLLMAVGRETLLSRFGTATAGSVEHAPTSVRSATSDEAPKGTTSLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHH
RFCTDFTRQAAEGNIDPVFGRDREIGQMVDILARRRKNNPIIVGEAGVGKTAVAEGLALR
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCEEE
IVEGDVPEALREVRLLGLDLGLLQAGAGVKGEFENRLKSVIEEVKGSPRPIILFIDEAHT
EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCE
IIGAGGQTGGGDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPD
EEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
VETAVLILRGLKEKYEAAHGVTIRDDGIRAAAELSSRYLSGRQLPDKAVDLLDTAAARVK
HHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEE
LLLTGKPGAVEEKERRIQALEREEAAMARDQLHGRPVDDERLDLLKAELLTLREELAAVT
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ARWHREQELAAEVMALRKELSTEAEENEDRRGLKRQVTEATARLAEFQGDAPLVRIEVEP
HHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECH
EVVARVVADWTGIPLGSLQKDRAAGVLTLEGDLRRRIKGQEPALSAVAEVLRSSAAGLKD
HHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
PRQPLGVFLLVGPSGVGKTETALAVADLLFGGERFLTVINMSEFQERHTTSRLIGSPPGY
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHEEEECHHHHHHHHHHHHHCCCCCCC
VGYGEGGVLTEAVRRQPYSVVLLDEVEKAHPDVMNLFYQVFDKGMLADGEGRVIDFANTV
CCCCCCCHHHHHHHCCCCEEEEEHHHHHHCHHHHHHHHHHHCCCCEECCCCCEEEECCEE
IFLTSNLASDVITSLCCGDQAPTAEGLTSAIRPHLSRHFKPALLARMSVVPYLTLAPEYL
EEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH
GEIVTLKLGRVAERLRENSRTALSWTPAVTERIAARCTEVESGARTIDHILRSTLLPLLS
HHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REILPRLGTGETPEAIRLDTTADGDFAVTFDTSGGMEQ
HHHHHCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]