Click here to switch to the map view.

The map label for this gene is 78224417

Identifier: 78224417

GI number: 78224417

Start: 3629874

End: 3630566

Strand: Reverse

Name: 78224417

Synonym: Gmet_3226

Alternate gene names: NA

Gene position: 3630566-3629874 (Counterclockwise)

Preceding gene: 78224418

Following gene: 78224414

Centisome position: 90.82

GC content: 61.33

Gene sequence:

>693_bases
ATGAACGGCACTCTCAGACTTGTCGCGTCGTCTCTTGTCCTCTCCCTTGCGTCGCTTTCCTCAGCCAGTGGCGCGGAGTA
TCTCCGCTACGCTCCGGAACCATCGGATGGCAAACCACTGGCGGGCCCCGAGGAGGGGGTTCTTGTCGAGCGCATCACCA
TCGAAAAGGGAGATACCCTGTATGGCCTGTCGCGGAAATACAGCGGCAAGGGAACCTACTTCTCCCAGATTCTGCTCTTT
AACGAGATTGCGAACCCCAACCTGATCTATGCGGGCCATAAACTCCTGGTTCCCCTGCCTCCCGGTCACGGCGAGGAAAC
CGCGGCGCCGACACGCCGTGCCAAGCCTGCAGAGAAGCGGAAGGGTGCCAGAAAGCATCAGGCGGTGACCCCTGCTTCAA
AGGAGGCAAAGCCGGTGGTCAAGTTGCCTGCGGCTACGACCCGTCCCTCCTCGCCACCTAGGGCGTCCGAGGTGCCGGCG
TCAAAGGCCGTTTCTCCCTCTCCGGCCACGCGCAAGGGGGGAGAGAACGAGCAGACCCTCTTTGAGAAGGGAGTCAGCGC
ATACAAGTCGGGCCAGTACCAGCAATCGCTCGACGCGTTTGACCGGTTCCTGGCCCGTTATCCGGAATCTCCCCTTGCCC
CCGATGCATCCCTCTATCGGGCCGATGCCCTCATGAAGATGGCGGGTCAATAG

Upstream 100 bases:

>100_bases
AAGGTGACCTTCAGGGTCAAGGCGGGAACCGCGGTTGGCAGGAGCATCCAGGTGAAGAACGTCCTGAACTACCAGGATCA
ACTCGGGAACAGGTACTGAT

Downstream 100 bases:

>100_bases
GTACTAGTTCATCTGCAGTATCATCTCTTTTGCCGGTAGTCTGTTCATGCGGAAATCACACATTTCCGTGATGCCGCGCC
CGTTTCCTTTGATCGAAAAA

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNGTLRLVASSLVLSLASLSSASGAEYLRYAPEPSDGKPLAGPEEGVLVERITIEKGDTLYGLSRKYSGKGTYFSQILLF
NEIANPNLIYAGHKLLVPLPPGHGEETAAPTRRAKPAEKRKGARKHQAVTPASKEAKPVVKLPAATTRPSSPPRASEVPA
SKAVSPSPATRKGGENEQTLFEKGVSAYKSGQYQQSLDAFDRFLARYPESPLAPDASLYRADALMKMAGQ

Sequences:

>Translated_230_residues
MNGTLRLVASSLVLSLASLSSASGAEYLRYAPEPSDGKPLAGPEEGVLVERITIEKGDTLYGLSRKYSGKGTYFSQILLF
NEIANPNLIYAGHKLLVPLPPGHGEETAAPTRRAKPAEKRKGARKHQAVTPASKEAKPVVKLPAATTRPSSPPRASEVPA
SKAVSPSPATRKGGENEQTLFEKGVSAYKSGQYQQSLDAFDRFLARYPESPLAPDASLYRADALMKMAGQ
>Mature_230_residues
MNGTLRLVASSLVLSLASLSSASGAEYLRYAPEPSDGKPLAGPEEGVLVERITIEKGDTLYGLSRKYSGKGTYFSQILLF
NEIANPNLIYAGHKLLVPLPPGHGEETAAPTRRAKPAEKRKGARKHQAVTPASKEAKPVVKLPAATTRPSSPPRASEVPA
SKAVSPSPATRKGGENEQTLFEKGVSAYKSGQYQQSLDAFDRFLARYPESPLAPDASLYRADALMKMAGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24563; Mature: 24563

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGTLRLVASSLVLSLASLSSASGAEYLRYAPEPSDGKPLAGPEEGVLVERITIEKGDTL
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEE
YGLSRKYSGKGTYFSQILLFNEIANPNLIYAGHKLLVPLPPGHGEETAAPTRRAKPAEKR
EECCCEECCCCHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHH
KGARKHQAVTPASKEAKPVVKLPAATTRPSSPPRASEVPASKAVSPSPATRKGGENEQTL
HCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
FEKGVSAYKSGQYQQSLDAFDRFLARYPESPLAPDASLYRADALMKMAGQ
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNGTLRLVASSLVLSLASLSSASGAEYLRYAPEPSDGKPLAGPEEGVLVERITIEKGDTL
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEE
YGLSRKYSGKGTYFSQILLFNEIANPNLIYAGHKLLVPLPPGHGEETAAPTRRAKPAEKR
EECCCEECCCCHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHH
KGARKHQAVTPASKEAKPVVKLPAATTRPSSPPRASEVPASKAVSPSPATRKGGENEQTL
HCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
FEKGVSAYKSGQYQQSLDAFDRFLARYPESPLAPDASLYRADALMKMAGQ
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA