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The map label for this gene is ycdS [C]

Identifier: 78224407

GI number: 78224407

Start: 3615370

End: 3617301

Strand: Direct

Name: ycdS [C]

Synonym: Gmet_3216

Alternate gene names: 78224407

Gene position: 3615370-3617301 (Clockwise)

Preceding gene: 78224394

Following gene: 78224409

Centisome position: 90.44

GC content: 60.09

Gene sequence:

>1932_bases
GTGATACACAGCAGAACGATCTTGGTCCCGACCCTCCTCTTTCAGCTTGCACTCGCGCTCCCCCTTGCTGCAGGGGCCGA
CAGCCGTTGCGACGACGCAAAGCGCCTGGCAGCCACCATCCCGGTGCAGGCCGATGGCGATACGACGAGGAAAACCGAGG
ATGTCGTCCTCGAATCCTGTGCCGACGGGGCCGCGGGCTATTTCGTCCGAGGCCTCCGCGCGGAGCGGGCGGGACGCCAT
GACGAGGCAATCAAGGACTACCGCGAGGCTCTCCGCCTTGAGCCGGCCTTTCCCCGGGCACAGGGAAACCTGGGCCTCGC
CCTCCTGGCTAAAGGAAGTCACGACGACGCCGTCGTGGAACTGACCCGGGCCATCTCCTCCGACCCCGACCCAGGCTACC
ACCATGGCCTTGCCATGATCTTCGGCCAGCGCAAGATATACTCCCTCGCCCTCTACCATTACGCTGAAGCGGCAAAGGGG
CTCCCTGCCGACCCGGTAATCCCCACCGAGCTTGCCGCCCTCTACCGTGAGATGGGGAAGGTTAGCGACGCCGAAAAGCA
GTACCGCAAGGCCCTCAGCCTCTCCCCCTCCCACGAAGAGGCACGAGTGGGCCTTGCGTCCCTCTACATGGCGGAAGGGC
GGACCGACCGGGCAATCGAGGAACTGAAACAGGCCCAGATCGCCAGCCCCGGGAACAAGGAGGTCAGCAGCCTCCTCGCC
GAGGCCTATGAGAAAAAGGGGGACCGTCAGGCAGCCGACTACCAGTCACTCCTGGCGGGGAAGCAGCGCGGTGTCCTCTC
CGACGAGCGACTCAGGAGGGGAGACGAACTCATGCAGGCCAAGGAGTATGCAAAGGCCGCGGAAGAGTTCAAGGCGGCAC
TCAGGGAAAAACCCGACTGGCCAGAGGCCCTGATGAGGCTCGCCGAAGCCCAGACGGCAGCGGGGTTCGATGACGAGGCC
ATTACCTCCTACAAGGAGTTGATCAGGCTCAAACTCGGCACCGGCGATACCCACTACAACCTCGGCGTCCTCTATGAGCG
GAAGGGTCTCATCGACGAGGCAGTGGTCGAGTACAAACAGGCAATCCACAGTTCACCCGACAACGGCGACGCCCGCCGAC
GCCTGGCAGACATATATGCGCTTCGCGGCAGCTACCCCCAGGCCATCGAACAGTACCGCGAGCTTCTCAAGAAAGGGGAC
AACAACCCGGTCCTCCATCTGAAACTCGCCCGGGCACTGCTGGGGGCCAAGAACCCCAAGGAAGCCATGGCCTCCTACCA
GGACGCCCTCAAAATCGCTCCCGACAACCTGGAGGCCCGCCGCGAACTGGCGGCCCTCTACCGCAAGGGAAACCAGAACG
AGGAGGCGGAGAAGCAATACAAGGAAATCCTCCGCATCAAGAAAGACGACGCCGAAGCCCGCAACATCCTCACTGCGCTC
TATGTGAAGTCCAAGAAATACGACGAATTAATCACCCTTCTGAAGGACGGGGTGGAACTCGCCCCCAATGATCCGGCCAG
CCATTACAAGCTTGGGCTCATCTACGAATTCAAGAAGGACTACGATGCCGCCGAACAAGAGTACAAAAAGGCGGTGGAAC
TGAAGGGGGATCACGCCAAGAGTCTCAATGCCCTGGGACGGATCTACCTGAAGACGGGAAAGATCTCCGAAGCAAAAGGA
GCTCTGGAAGCAGCCAAGAAAGCCGACCCGGGAATGGAAGAAACAGCCGTCCTTCTGAGCAACATCAAAGAAGAACTTTC
TCCCGAACCACCCCGCTACAGCAAGAAAGGGCGCAAAGGAAAAGCTTCGAAAGAGGCAAAAAAATCCCGGGCATCAAAGA
AGAAATCATCGAAGAAGGGCGCTAAGGCCACTTCCAAGAAATCATCCACTAAATCCGGAGGCAAGGCCAAAAAAGCCAAG
AAGAGCCACTAG

Upstream 100 bases:

>100_bases
GAGACTGCCGCCGGGCACCCCACGCACAACAAAGACCTGTCATGCAGAGTGAACCGACAGGCATCGAAACACACTCGAAA
CGATTTCAGGAGGACACTTC

Downstream 100 bases:

>100_bases
GAGCCTGCCCGCTCACCACGGATCGATTCGTCAGAAATATCCTCTTATTGATAACAAGAAGGGCCGGCATTGCCGGCCCT
TCGCCCATCGGAGACCTTTG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; TPR Domain Protein; TPR Domain-Containing Protein; Peptidase; Tetratricopeptide Repeat Family; PEP-CTERM System TPR-Repeat Lipoprotein; Sulfotransferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Domain-Containing Protein; Glycosyl Transferase Family Protein; TPR Repeat Protein; Tetratricopeptide Tpr_2 Repeat Protein; Porphyrin Biosynthesis Protein; TPR-Repeat-Containing Protein; Intermediate Filament Protein; Peptidase S1 And S6 Chymotrypsin/Hap; TPR Repeat; Tetratricopeptide Repeat Protein; TPR Repeat-Containing Methyltransferase; TPR Repeat-Containing Serine/Threonin Protein Kinase; Tetratricopeptide Domain Protein; Protein Kinase

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MIHSRTILVPTLLFQLALALPLAAGADSRCDDAKRLAATIPVQADGDTTRKTEDVVLESCADGAAGYFVRGLRAERAGRH
DEAIKDYREALRLEPAFPRAQGNLGLALLAKGSHDDAVVELTRAISSDPDPGYHHGLAMIFGQRKIYSLALYHYAEAAKG
LPADPVIPTELAALYREMGKVSDAEKQYRKALSLSPSHEEARVGLASLYMAEGRTDRAIEELKQAQIASPGNKEVSSLLA
EAYEKKGDRQAADYQSLLAGKQRGVLSDERLRRGDELMQAKEYAKAAEEFKAALREKPDWPEALMRLAEAQTAAGFDDEA
ITSYKELIRLKLGTGDTHYNLGVLYERKGLIDEAVVEYKQAIHSSPDNGDARRRLADIYALRGSYPQAIEQYRELLKKGD
NNPVLHLKLARALLGAKNPKEAMASYQDALKIAPDNLEARRELAALYRKGNQNEEAEKQYKEILRIKKDDAEARNILTAL
YVKSKKYDELITLLKDGVELAPNDPASHYKLGLIYEFKKDYDAAEQEYKKAVELKGDHAKSLNALGRIYLKTGKISEAKG
ALEAAKKADPGMEETAVLLSNIKEELSPEPPRYSKKGRKGKASKEAKKSRASKKKSSKKGAKATSKKSSTKSGGKAKKAK
KSH

Sequences:

>Translated_643_residues
MIHSRTILVPTLLFQLALALPLAAGADSRCDDAKRLAATIPVQADGDTTRKTEDVVLESCADGAAGYFVRGLRAERAGRH
DEAIKDYREALRLEPAFPRAQGNLGLALLAKGSHDDAVVELTRAISSDPDPGYHHGLAMIFGQRKIYSLALYHYAEAAKG
LPADPVIPTELAALYREMGKVSDAEKQYRKALSLSPSHEEARVGLASLYMAEGRTDRAIEELKQAQIASPGNKEVSSLLA
EAYEKKGDRQAADYQSLLAGKQRGVLSDERLRRGDELMQAKEYAKAAEEFKAALREKPDWPEALMRLAEAQTAAGFDDEA
ITSYKELIRLKLGTGDTHYNLGVLYERKGLIDEAVVEYKQAIHSSPDNGDARRRLADIYALRGSYPQAIEQYRELLKKGD
NNPVLHLKLARALLGAKNPKEAMASYQDALKIAPDNLEARRELAALYRKGNQNEEAEKQYKEILRIKKDDAEARNILTAL
YVKSKKYDELITLLKDGVELAPNDPASHYKLGLIYEFKKDYDAAEQEYKKAVELKGDHAKSLNALGRIYLKTGKISEAKG
ALEAAKKADPGMEETAVLLSNIKEELSPEPPRYSKKGRKGKASKEAKKSRASKKKSSKKGAKATSKKSSTKSGGKAKKAK
KSH
>Mature_643_residues
MIHSRTILVPTLLFQLALALPLAAGADSRCDDAKRLAATIPVQADGDTTRKTEDVVLESCADGAAGYFVRGLRAERAGRH
DEAIKDYREALRLEPAFPRAQGNLGLALLAKGSHDDAVVELTRAISSDPDPGYHHGLAMIFGQRKIYSLALYHYAEAAKG
LPADPVIPTELAALYREMGKVSDAEKQYRKALSLSPSHEEARVGLASLYMAEGRTDRAIEELKQAQIASPGNKEVSSLLA
EAYEKKGDRQAADYQSLLAGKQRGVLSDERLRRGDELMQAKEYAKAAEEFKAALREKPDWPEALMRLAEAQTAAGFDDEA
ITSYKELIRLKLGTGDTHYNLGVLYERKGLIDEAVVEYKQAIHSSPDNGDARRRLADIYALRGSYPQAIEQYRELLKKGD
NNPVLHLKLARALLGAKNPKEAMASYQDALKIAPDNLEARRELAALYRKGNQNEEAEKQYKEILRIKKDDAEARNILTAL
YVKSKKYDELITLLKDGVELAPNDPASHYKLGLIYEFKKDYDAAEQEYKKAVELKGDHAKSLNALGRIYLKTGKISEAKG
ALEAAKKADPGMEETAVLLSNIKEELSPEPPRYSKKGRKGKASKEAKKSRASKKKSSKKGAKATSKKSSTKSGGKAKKAK
KSH

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32307150, Length=460, Percent_Identity=23.0434782608696, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI32307148, Length=460, Percent_Identity=23.0434782608696, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI301336134, Length=425, Percent_Identity=24.7058823529412, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI83415184, Length=425, Percent_Identity=24.7058823529412, Blast_Score=90, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI115532690, Length=460, Percent_Identity=21.304347826087, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI115532692, Length=460, Percent_Identity=21.304347826087, Blast_Score=90, Evalue=5e-18,
Organism=Drosophila melanogaster, GI17647755, Length=452, Percent_Identity=23.8938053097345, Blast_Score=99, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24585827, Length=452, Percent_Identity=23.8938053097345, Blast_Score=99, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24585829, Length=452, Percent_Identity=23.8938053097345, Blast_Score=99, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70831; Mature: 70831

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSRTILVPTLLFQLALALPLAAGADSRCDDAKRLAATIPVQADGDTTRKTEDVVLESC
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
ADGAAGYFVRGLRAERAGRHDEAIKDYREALRLEPAFPRAQGNLGLALLAKGSHDDAVVE
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHH
LTRAISSDPDPGYHHGLAMIFGQRKIYSLALYHYAEAAKGLPADPVIPTELAALYREMGK
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
VSDAEKQYRKALSLSPSHEEARVGLASLYMAEGRTDRAIEELKQAQIASPGNKEVSSLLA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
EAYEKKGDRQAADYQSLLAGKQRGVLSDERLRRGDELMQAKEYAKAAEEFKAALREKPDW
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
PEALMRLAEAQTAAGFDDEAITSYKELIRLKLGTGDTHYNLGVLYERKGLIDEAVVEYKQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHH
AIHSSPDNGDARRRLADIYALRGSYPQAIEQYRELLKKGDNNPVLHLKLARALLGAKNPK
HHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCHH
EAMASYQDALKIAPDNLEARRELAALYRKGNQNEEAEKQYKEILRIKKDDAEARNILTAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
YVKSKKYDELITLLKDGVELAPNDPASHYKLGLIYEFKKDYDAAEQEYKKAVELKGDHAK
HHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHCCCHHHHHHHHHHHCCCCHHH
SLNALGRIYLKTGKISEAKGALEAAKKADPGMEETAVLLSNIKEELSPEPPRYSKKGRKG
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KASKEAKKSRASKKKSSKKGAKATSKKSSTKSGGKAKKAKKSH
CCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MIHSRTILVPTLLFQLALALPLAAGADSRCDDAKRLAATIPVQADGDTTRKTEDVVLESC
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
ADGAAGYFVRGLRAERAGRHDEAIKDYREALRLEPAFPRAQGNLGLALLAKGSHDDAVVE
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHH
LTRAISSDPDPGYHHGLAMIFGQRKIYSLALYHYAEAAKGLPADPVIPTELAALYREMGK
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
VSDAEKQYRKALSLSPSHEEARVGLASLYMAEGRTDRAIEELKQAQIASPGNKEVSSLLA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
EAYEKKGDRQAADYQSLLAGKQRGVLSDERLRRGDELMQAKEYAKAAEEFKAALREKPDW
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
PEALMRLAEAQTAAGFDDEAITSYKELIRLKLGTGDTHYNLGVLYERKGLIDEAVVEYKQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHH
AIHSSPDNGDARRRLADIYALRGSYPQAIEQYRELLKKGDNNPVLHLKLARALLGAKNPK
HHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCHH
EAMASYQDALKIAPDNLEARRELAALYRKGNQNEEAEKQYKEILRIKKDDAEARNILTAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
YVKSKKYDELITLLKDGVELAPNDPASHYKLGLIYEFKKDYDAAEQEYKKAVELKGDHAK
HHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHCCCHHHHHHHHHHHCCCCHHH
SLNALGRIYLKTGKISEAKGALEAAKKADPGMEETAVLLSNIKEELSPEPPRYSKKGRKG
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KASKEAKKSRASKKKSSKKGAKATSKKSSTKSGGKAKKAKKSH
CCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA